BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27880.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489543 jgi|Araly1|489543|fgenesh2_kg.6__2677__AT5G27880.1 1149 0.0
> Ahg489543 jgi|Araly1|489543|fgenesh2_kg.6__2677__AT5G27880.1
Length=858
Score = 1149 bits (622), Expect = 0.0
Identities = 791/866 (91%), Gaps = 37/866 (4%)
Strand=Plus/Plus
Query 1 ATGTCTTCTTCAATG-TCTTCTGCAGGCTCTTCCACACCCAAATCCAAAAAGCTCAAAGG 59
||||||||||||| | ||||| || | | ||||||||||||||||||| ||||||||
Sbjct 1 ATGTCTTCTTCAA-GCTCTTC--CA--CAC--CCACACCCAAATCCAAAAAACTCAAAGG 53
Query 60 CATTGTTGTGGACATGGAGAAGTCGAAAGAGAAGGCAACAAGGAACACTATTCTGAAACT 119
||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 54 CATTGTTGTGGCCATGGAGAAGTCGAAAGAGAAGGCAACAAGGAGCACCAATCTGAAACT 113
Query 120 AGGTTCTCCTCAAGAGGTTACCTCTGAAAGGAGGATTGAGAACTCTAGTTTTGGATCTAG 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 114 AGGTTCTCCTCAAGAGGTTACCTCTGAAAGGAGGTTTGAGAACTCTAGTTTTGGATCTAG 173
Query 180 TGCTGTCCGAAGAGGAAGAGAGATCATGAAGTTTTACCCGTCAAAATCAAACAAGATCTA 239
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 174 TGCTGTCCGAAGAGGAAGAGAGATCATGAAGTTTTATCCGTCCAAATCGAACAAGATCTA 233
Query 240 CACTTGTCATTTTTGCAAAAAAGGTTTCTCAACCTCTCAAGCCTTAGGTGGTCACCAGAA 299
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 234 CACTTGTCATTTTTGCAAGAAAGGATTCTCAACCTCTCAAGCCTTAGGTGGTCACCAGAA 293
Query 300 CGCGCACAAGCAAGAGCGGGAGTGGGACAAAAAGCGGAAGGAGATGGAAGCTGAGTATCC 359
|||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||
Sbjct 294 CGCGCACAAGCAAGAGCGGGAGTGGGACAAAAAGCGGAAGGAGATGCAAGCCGACTACCC 353
Query 360 TGGACTCTCCTTTTTGAACCCTTTCCTTGATAAGCCTCACATTCTCTTAGGTGGTTATTC 419
||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 354 TGGACTCGCCTTTTTTAACCCTTACCTTGATAAGCCTCACATTCTCTTAGGTGGGTATTC 413
Query 420 ACAAGATGCTTTATCAAATGAAAATCATCTTGGGATCACTCTTGATCCTTTTAAACGCTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 414 ACAAGATGCTTTATCAAATGAAAATCATCTTGGGATCACTCTTGATCCTTTTAAACGTTT 473
Query 480 AATTTACCCATCTTTCAA---TG----C---GG-G---T-----AT--GAACATGGCTGT 518
|||||||||||||||||| || | || | | || |||| |||||||
Sbjct 474 AATTTACCCATCTTTCAAGAGTGGGGTCATTGGAGGAATTGCGGATATGAACGTGGCTGT 533
Query 519 AGTTCCTCGTGTCACTCCTACTCGCTTCTTCACCGGGAACACTAGTACCAATGGTTCTA- 577
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 534 AGTTCCTCGTGTGACTCCTACTCGCTTCTTCACCGGGAACACTAGTACCAATGGTTC-AG 592
Query 578 CTTCAAGGGTCCCTGATCCTTTACCATCCTACAACAACCTTTACCCATCAAACTCTAGAA 637
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 593 CTTCAAGGGTCCCTAATCCTTTACCATCCTACAACAACCTTTACCCATTAAACTCGAGAA 652
Query 638 ACGTTCTTCCTTTTCCTCCTCCTCAAACCACCAAGCTTTCTAGCAATTTCGTCTCGCAAG 697
|||||||||||||||||||| |||||| ||||| |||||||||||||| || |||||||
Sbjct 653 ACGTTCTTCCTTTTCCTCCTTTTCAAACTACCAAACTTTCTAGCAATTTGGTTTCGCAAG 712
Query 698 GAAACGTTTTAAGCGAAGAGAATTTCATCTCAAAGATTGGAACAAA---CAATATTGTGG 754
|||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 713 GAAACGGTTTGAGCGAGGAGAATTTCATCTCAAAGATTGGAACAAAGAACAATATTGTGG 772
Query 755 AGATtgatgatgatgatgatgat-AT-TC-AGCCAGAAGAAGAAAAAACTAAAAGCGGGA 811
||||||||||||||||||||||| || || | |||||||||||||||||||||||||||
Sbjct 773 AGATTGATGATGATGATGATGATGATATCCAACCAGAAGAAGAAAAAACTAAAAGCGGGG 832
Query 812 GAATTGATTTATCTTTATCCCTTTGA 837
|||||||||||||| |||||||||||
Sbjct 833 GAATTGATTTATCTCTATCCCTTTGA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5