BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27910.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949601 jgi|Araly1|949601|scaffold_801488.1 538 2e-152
Ahg949597 jgi|Araly1|949597|scaffold_801484.1 425 1e-118
> Ahg949601 jgi|Araly1|949601|scaffold_801488.1
Length=604
Score = 538 bits (291), Expect = 2e-152
Identities = 479/570 (84%), Gaps = 12/570 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAACAACAACGGCAACAACCAGCTGCCACCGAAAGGTAACGAGCAACTGAAGAGT 60
|||||||||| || ||||||| |||||| ||||| |||| |||||||||||| ||||||
Sbjct 21 ATGGAGAACATCACCGGCAACCACCAGCAGCCACAAAAAGATAACGAGCAACTAAAGAGT 80
Query 61 TTCTGGTCAAAAGAGATGGAAGGTAACTTAG-ATTTCAAAAATCACGACCTTCCTATAAC 119
||||||||||| |||||||||||| |||| | ||||||| |||||||| |||| |||||
Sbjct 81 TTCTGGTCAAAGGAGATGGAAGGTGACTT-GAATTTCAAGAATCACGAGTTTCCCATAAC 139
Query 120 TCGTATCAAGAAGATTATGAAGTATGATCCGGATGTGACTATGATAGCTAGTGAGGCTCC 179
||||||||||| ||||||||||| |||||| |||||||||||| | ||| ||||||| ||
Sbjct 140 TCGTATCAAGAGGATTATGAAGTTTGATCCTGATGTGACTATGGTTGCTGGTGAGGCACC 199
Query 180 AATCCTCCTCTCGAAAGCATGTGAGATGTTTATCATGGATCTCACGATGCGTTCGTGGCT 239
|||||| |||||||||| || |||||||| ||||||||| |||||||||||||||||||
Sbjct 200 AATCCTATTCTCGAAAGCCTGCGAGATGTTCATCATGGATGTCACGATGCGTTCGTGGCT 259
Query 240 CCATGCTCAGGAAAGCAAACGAGTCACGCTACAGAAATCTAATGTCGATGCCGCAGTGGC 299
|||||||||||| ||||| ||| ||||| || ||| |||| |||||| |||||||||||
Sbjct 260 CCATGCTCAGGAGAGCAACCGACTCACGATAAAGAGATCTGATGTCGCTGCCGCAGTGGA 319
Query 300 TCAAACTGTTATCTTTGATTTCTTGCTTGATGATGAC-ATTGAGGTAA-AGAGAGAGTCT 357
|| ||| | |||||||||||||||||||||| || | || |||| | || |||||||
Sbjct 320 TCGAACCCTCATCTTTGATTTCTTGCTTGATGTTGTCGAT-GAGG-ACGAGGGAGAGTCC 377
Query 358 GTTGCCGCCGCTGCTGATC-CTGTGGCCATGCCACCTATTGACGATGGAGAGCTGCCTCC 416
|||| |||||||||||||| | |||||| |||||| | ||||| ||||||| ||||| ||
Sbjct 378 GTTGTCGCCGCTGCTGATCTC-GTGGCCGTGCCACATCTTGACAATGGAGAACTGCCGCC 436
Query 417 AGGAATGGTAATTGGAACTCCTGTTTGTTGTAGTCTTGGAATCCAC-CAACCACAACCAC 475
|||||||| || || ||||| |||||| | |||||||||| || | ||||| || |
Sbjct 437 GGGAATGGTTATAGGTACTCCGGTTTGTAGCGGTCTTGGAATATACGCG-CCACAGCCGC 495
Query 476 AAATGCAGGCATGGCCTGGAGCTTGGACCTCGGTGTCTGGTGAGGAGGAAGAAGCG-CGT 534
| |||||||| |||||||||||||||||| ||| | ||||||||||||| || ||| | |
Sbjct 496 AGATGCAGGCGTGGCCTGGAGCTTGGACCGCGGCGCCTGGTGAGGAGGAGGATGCGGC-T 554
Query 535 GGGAAAAAAGGAGGTGACGACGGAAACTAA 564
||| ||| |||| |||| |||||| |||
Sbjct 555 GGGGGAAATGGAGAAGACGGCGGAAATTAA 584
> Ahg949597 jgi|Araly1|949597|scaffold_801484.1
Length=567
Score = 425 bits (230), Expect = 1e-118
Identities = 381/453 (84%), Gaps = 14/453 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAACAACAA-CGGCAACAACCAGCTGCC-ACCGAAAGGTAACGAGCAACTGAAGA 58
|||||||||||||| | || || ||| | || ||| ||| |||||||| || ||||
Sbjct 23 ATGGAGAACAACAACCACCAGCAGCCA-C-CCCAACCCCAAGACAACGAGCAGCTAAAGA 80
Query 59 GTTTCTGGTCAAAAGAGATGGAAGGTAACTTAGATTTCAAA-AATCACGACCTT-CCTAT 116
||||||||||||| |||||||||||| |||| ||||| ||| |||||||| || ||| |
Sbjct 81 GTTTCTGGTCAAAGGAGATGGAAGGTGACTTGGATTT-AAAGAATCACGAGTTTCCCT-T 138
Query 117 AACTCGTATCAAGAAGATTATGAAGTATGATCCGGATGTGACTATGATAGCTAG-TGAGG 175
| |||||||||||| ||||||||||| |||||| ||||||| |||||| ||| | ||||
Sbjct 139 ATCTCGTATCAAGAGGATTATGAAGTTTGATCCTGATGTGAATATGATCGCT-GCGGAGG 197
Query 176 CTCCAATCCTCCTCTCGAAAGCATGTGAGATGTTTATCATGGATCTCACGATGCGTTCGT 235
| |||||||| | || ||||| || |||||||||||||||||| |||||||||||||||
Sbjct 198 CACCAATCCTGTTTTCCAAAGCCTGCGAGATGTTTATCATGGATGTCACGATGCGTTCGT 257
Query 236 GGCTCCATGCTCAGGAAAGCAAACGAGTCACGCTACAGAAATCTAATGTCGATGCCGCAG 295
|||||||||||||||| || |||||| ||||| || |||||||| |||||| ||||||||
Sbjct 258 GGCTCCATGCTCAGGAGAGAAAACGACTCACGATAAAGAAATCTGATGTCGCTGCCGCAG 317
Query 296 TGGCTCAAACTGTTATCTTTGATTTCTTGCTTGATGATGACATTGAGGTAA-AGAGAGAG 354
||| || ||| | |||||||||||||||||||||| || || ||||| || || |||||
Sbjct 318 TGGATCGAACCCTCATCTTTGATTTCTTGCTTGATGTTGTCAATGAGG-AAGAGGGAGAG 376
Query 355 TCTGTTGCCGCCGCTGCTGATCCTGTGGCCATGCCACCTATTGACGATGGAGAGCTGCCT 414
|| ||||| ||||||||||||| ||||||||||||| | ||| ||||||||| |||||
Sbjct 377 TCCGTTGCTACCGCTGCTGATCCCGTGGCCATGCCACATCTTGGCGATGGAGAACTGCC- 435
Query 415 CCAGG-AATGGTAATTGGAACTCCTGTTTGTTG 446
||||| |||||| || |||||||| ||||||||
Sbjct 436 CCAGGGAATGGTGATAGGAACTCCGGTTTGTTG 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20604018060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5