BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27920.1
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942295 jgi|Araly1|942295|scaffold_602839.1 3133 0.0
> Ahg942295 jgi|Araly1|942295|scaffold_602839.1
Length=1969
Score = 3133 bits (1696), Expect = 0.0
Identities = 1875/1964 (95%), Gaps = 2/1964 (0%)
Strand=Plus/Plus
Query 252 TTTCTGGTTCTGTTGCAAAAATGTCGACGTCACCATCAATTTTATCCGTTTTGTCGGAAG 311
||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 3 TTTTTGGTTCTGTTGC--AAATGTCGATGTCTCCATCAATTTTATCCGTTTTGTCGGAAG 60
Query 312 ATCTTCTTGTCCGAGTCTACGAATGTCTAGACCCACCGTGTCGGAAAACATGGCGTTTAA 371
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 61 ATCTTCTTGTCCGAGTCTACGAATTTCTAGATCCACCGTGTCGGAAAACATGGCGTTTAA 120
Query 372 TCAGCAAAGACTTCCTCCGAGTCGACTCATTGACTCGTACCACGATCCGAATCCTCCGGG 431
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 121 TCAGCAAAGACTTCCTCCGAGTCGACTCATTGAGTCGAACCACGATCCGAATCCTCCGGG 180
Query 432 TCGAATTTCTCCCGACGCTTCTCTTCAAATACCCAAACCTCTCTTCCCTCGACCTCTCCG 491
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TTGAGTTTCTCCCGACGCTTCTCTTCAAATACCCAAATCTCTCTTCCCTCGACCTCTCCG 240
Query 492 TCTGTCCAAAACTCGACGACGATGTCGTTTTACGTTTAGCATTAGACGGCGCCATTTCAA 551
||||||| |||||||||||||| |||||||| ||| |||||||||||||| || |||| |
Sbjct 241 TCTGTCCCAAACTCGACGACGACGTCGTTTTGCGTCTAGCATTAGACGGCACCGTTTCTA 300
Query 552 CGTTAGGCATTAAGTCACTGAACTTAAGCCGTTCCACCGCAGTTCGAGCTAGAGGACTTG 611
| ||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||
Sbjct 301 CATTAGGCATTAAGTCACTGAACCTGAGCCGATCCACCGCAGTTCGAGCCAGAGGACTTG 360
Query 612 AGACGTTGGCGCGTATGTGTCACGCTTTAGAGCGCGTCGACGTGTCTCATTGCTGGGGAT 671
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 361 AGACGTTGGCGCGTATGTGTCACGCTTTAGAGCGCGTTGATGTGTCTCATTGCTGGGGAT 420
Query 672 TCGGCGATAGAGAAGCGGCTGCGTTGTCGTCTGCGACGGGGCTGAGAGAGCTGAAGATGG 731
|||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 421 TCGGTGATAGAGAAGCGGCGGCGCTGTCGTCTGCGGCGGGGCTGAGAGAGCTGAAGATGG 480
Query 732 ATAAGTGTTTGAGCTTAAGCGATGTTGGATTAGCGAGGATTGTTGTTGGATGTAGTAATC 791
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 ATAAGTGTTTGAGCTTAAGCGATGTTGGATTAGCGAGGATCGTTGTTGGATGTAGTAATC 540
Query 792 TGAATAAGATTAGCTTGAAATGGTGTATGGAGATCTCTGATCTTGGTATTGATCTTCTTT 851
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 541 TGAATAAGATTAGCTTGAAATGGTGTATGGAGATCTCTGATCTTGGGATTGATCTTCTCT 600
Query 852 GTAAGATTTGCAAAGGATTGAAATCTCTAGATGTCTCTTATCTTAAGATCACAAATGATT 911
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 601 GTAAGATTTGCAAAGGATTGAAATCTCTAGATGTCTCGTATCTTAAGATCACCAATGATT 660
Query 912 CGATCCGGTCTATAGCGTTGCTGGTAAAGCTTGAGGTTTTAGATATGGTAAGTTGTCCTT 971
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 CGATCCGGTCTATAGCTTTGCTGCTAAAGCTTGAGGTTTTAGATATGGTAAGTTGTCCTT 720
Query 972 TGATAGATGATGGTGGGTTACAGTTTCTAGAGAATGGTTCTCCTTCATTACAGGAGGTTG 1031
|||||||||||| ||| |||||||||||||||||||||||||||||| ||||| || | |
Sbjct 721 TGATAGATGATGCTGGATTACAGTTTCTAGAGAATGGTTCTCCTTCACTACAGAAGATCG 780
Query 1032 ATGTCACTAGGTGTGACCGTGTGAGTTTGTCTGGCTTGATCTCTATAGTCAGAGGCCATC 1091
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 ATGTCACGAGGTGTGAGCGTGTGAGTTTGTCCGGCTTGATCTCTATAGTCAGAGGCCATC 840
Query 1092 CTGATATTCAACTTCTTAAAGCCAGTCACTGTGTATCGGAAGTCTCTGGTAGCTTCTTAA 1151
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 CTGATATTCAACTTCTAAAAGCCAGTCACTGTGTATCCGAAGTCTCTGGTAGCTTCTTAC 900
Query 1152 AGTACATCAAAGGTTTGAAGCATCTCAAGACTATATGGATTGATGGAGCTCATGTTTCTG 1211
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGTACATCAAAGCTTTGAAGCATCTCAAGACTATATGGATTGATGGAGCTCATGTTTCTG 960
Query 1212 ATTCCTCTCTTGTAAGTTTAAGCTCTAGCTGTAGATCTTTAATGGAGATTGGACTGAGCA 1271
||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 961 ATTCCTCTCTTGTAACCTTAAGCTCTAGCTGTAGATCTTTAGTGGAGATTGGATTGAGCA 1020
Query 1272 GATGTGTTGATGTGACGGATATTGGGATGATAAGTCTTGCACGCAACTGCTTAAACCTGA 1331
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 GATGTGTTGATGTGACGGATATTGGGATGATGGGTCTTGCACGCAACTGCTTAAACCTGA 1080
Query 1332 AAACATTAAATCTGGCGTGTTGCGGATTCGTGACGGATGTAGCCATCTCTGCTGTAGCTC 1391
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAACATTGAATCTGGCGTGTTGTGGATTCGTGACGGATGTAGCCATCTCTGCTGTAGCTC 1140
Query 1392 AGTCTTGCCGGAATCTAGGGACTTTAAAGTTAGAGTCTTGTCATTTGATAACTGAGAAAG 1451
|||||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1141 AGTCTTGCCGAAATCTAGAGACTTTGAAGCTAGAGTCTTGTCATTTGATAACTGAGAAAG 1200
Query 1452 GTCTTCAATCGCTTGGATGTTACTCCATGCTTGTTCAAGAACTTGATCTTACTGACTGTT 1511
||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 1201 GTCTTCAATCGCTCGGATGTTACTCCAAGCTTCTTCAAGAACTCGATCTTACTGACTGTT 1260
Query 1512 ATGGTGTAAATGACAGAGGGCTAGAATATATCTCGAAGTGTTCGAATCTTCAAAGATTGA 1571
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1261 ATGGCGTAAATGACAGAGGGCTAGAATATATCTCAAAGTGTTCGAATCTTCAAAGATTGA 1320
Query 1572 AACTTGGACTCTGCACAAATATCTCAGACAAAGGGATTTTCCATATTGGTTCCAAATGTT 1631
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 AACTTGGCCTCTGCACAAATATCTCAGACAAAGGGATTTTTCATATTGGTTCCAAATGTT 1380
Query 1632 CGAAGCTTCTAGAACTTGATCTATACCGCTGTGCCGGTTTTGGAGATGATGGTTTAGCAG 1691
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1381 CGAAGCTTCTAGAACTTGATCTATACCGTTGTGCCGGTTTTGGAGATGATGGTTTAGCAG 1440
Query 1692 CTTTATCTCGAGGTTGCAAGAGCTTGAACCGACTCATTCTATCATACTGCTGTGAACTAA 1751
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CTCTATCCCGAGGTTGCAAGAGCTTGAACCGACTCATTCTATCATACTGCTGTGAACTAA 1500
Query 1752 CTGACACCGGGGTTGAACAAATCCGGCAGCTAGAACTTCTAAGTCACCTCGAACTTCGAG 1811
||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||
Sbjct 1501 CTGACACCGGGGTTGAACAAATCCGCCAGCTAGATCTTCTGAGTCACCTTGAACTTCGAG 1560
Query 1812 GGCTAAAGAATATAACCGGTGTTGGTTTAGCAGCCATTGCGTCCGGCTGCAAGAAATTGG 1871
||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 1561 GGCTAAAGAATATAACCGGTGTTGGTTTAGCTGCAATTGCGTGCGGCTGCAAGAAATTGG 1620
Query 1872 GTTACTTGGACGTTAAACTCTGCGAGAATATTGATGATTCGGGTTTTTGGGCGCTCGCTT 1931
||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1621 GTTACTTGGACCTGAAACTCTGCGAGAATATTGATGATTCGGGTTTCTGGGCGCTCGCTT 1680
Query 1932 ACTTCTCGAAAAACCTACGACAGATAAACTTGTGCAATTGCTCGGTGTCTGATACGGCTC 1991
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ACTTCTCAAAAAACCTACGACAGATAAACTTGTGCAATTGCTCGGTGTCTGATACGGCTC 1740
Query 1992 TATGCATGTTGATGAGCAATCTGAGTCGGGTTCAAGACGTTGACTTAGTTCATCTGAGCC 2051
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1741 TATGCATGTTGATGAGCAATCTGAGTCGGGTTCAAGATGTTGACTTAGTTCATCTGAGCC 1800
Query 2052 GTGTGACTGTAGAAGGGTTTGAGTTTGCTCTAAGAGCCTGTTGCAATAGGCTCAAGAAGC 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GTGTGACTGTAGAAGGGTTTGAGTTTGCTCTAAGAGCCTGTTGCAATAGGCTCAAGAAGC 1860
Query 2112 TTAAACTTCTCGCACCTCTCAGATTCTTGCTCTCATCGGAATTGCTCGAGACGCTTCATG 2171
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1861 TTAAACTTCTCGCACCTCTCCGATTCTTGCTCTCATCGGAATTGCTCGAGACACTTCATG 1920
Query 2172 CTCGTGGTTGCCGCATTAGATGGGACTGAAAACATAAAGAACAA 2215
|||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1921 CTCGTGGTTGCCGCATTAGATGGGACTGAAGACATAAATAACAA 1964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88826451340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5