BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27930.1
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489539 jgi|Araly1|489539|fgenesh2_kg.6__2673__AT5G27930.2 1864 0.0
Ahg477856 jgi|Araly1|477856|fgenesh2_kg.3__557__AT3G05640.2 761 0.0
Ahg479146 jgi|Araly1|479146|fgenesh2_kg.3__1847__AT3G16800.2 104 2e-21
> Ahg489539 jgi|Araly1|489539|fgenesh2_kg.6__2673__AT5G27930.2
Length=1513
Score = 1864 bits (1009), Expect = 0.0
Identities = 1140/1204 (95%), Gaps = 6/1204 (0%)
Strand=Plus/Plus
Query 59 AAGCTTAAGGAGAAAGTTTCTCGTTGTTGCTTGATATATTAATCTTTTGGGGTATTTAAA 118
|||||||||||| |||||||||||||||| |||||| ||| ||| |||||||||||||||
Sbjct 255 AAGCTTAAGGAGGAAGTTTCTCGTTGTTGTTTGATAAATTGATC-TTTGGGGTATTTAAA 313
Query 119 AGATGGGACATTTCTCATCGATGTTCAATGGATTAGCTCGATCATTTTCTATAAAGAAAG 178
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 314 AGATGGGACATTTCTCATCGATGTTTAATGGATTAGCTCGATCATTTTCGATAAAGAAAG 373
Query 179 TGAAGAACAACAATGGAAACTGCGACGCAAAGGAAGCTGCTGATGAGATGGC-AAGCGAG 237
|||| || ||||||||||||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 374 TGAAAAATAACAATGGAAACTGCGATGCAAAAGAAGCTGCTGATGAGATGGCGAA-CGAG 432
Query 238 GCTAAGAAAAAAGAATTGATTCTGAAATCCTCTGGTTATGTTAATGTACAAGGATCTAAT 297
|| ||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 433 GCGAAGAAGAAAGAACTGATTCTGAAATCCTCTGGTTATGTTAATGTAGAAGGATCTAAT 492
Query 298 AATTTAGCCTCTCTTTTCTCCAAACGCGGCGAAAAAGGCGTTAATCAGGATTGTGCACTC 357
|||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 493 AATTTAGCCTCTGTTTTCTCCAAACGCGGTGAAAAAGGCGTTAACCAAGATTGTGCACTC 552
Query 358 GTTTGGGAGGGATTTGGGTGCCAAGAAGACATGATCTTCTGCGGGATATTCGATGGACAC 417
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 553 GTTTGGGAGGGATTTGGGTGCCAAGAGGACATGATCTTCTGCGGGATATTTGATGGACAC 612
Query 418 GGTCCATGGGGTCACTATGTAGCCAAACAAGTAAGAAACTCAATGCCTTTGTCGCTTCTT 477
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 613 GGTCCATGGGGTCACTATGTAGCCAAACAAGTACGAAACTCAATGCCTTCGTCGCTTCTC 672
Query 478 TGCAACTGGCAAAAGATTCTTGCTCAGGCCACTCTAGAACCCGAGCTCGACCTCGAAGGC 537
||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||
Sbjct 673 TGCAACTGGCAAAAGATTCTTGCACAGGCCACCCTAGAGCCCGAGCTTGACCTTGAAGGC 732
Query 538 TCTAATaaaaaaaTCTCAAGATTCGACATATGGAAGCAATCCTATCTAAAAACGTGTGCA 597
|||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 733 TCTAATAAAAAACTCTCAAGATTCGACATATGGAAGCAATCCTATCTCAAAACATGTGCA 792
Query 598 ACGGTTGATCAAGAGCTTGAACATCACCGCAAGATCGATTCTTACTATAGCGGCACAACA 657
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 793 ACGGTTGATCAAGAGCTTGAACATCACCGCAAGATCGATTCTTACTACAGCGGCACAACA 852
Query 658 GCTCTAACCATTGTGAGACAGGGTGAAGTTATTTATGTAGCAAATGTAGGCGATTCAAGA 717
|||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 853 GCTCTAACCATTGTCAGACAGGGTGAAGTTATTTATGTCGCGAATGTAGGTGATTCAAGA 912
Query 718 GCGGTACTAGCCATGGAGTCGGATGAGGGAAGCTTGGTTGCGGTTCAGCTCACCCTCGAT 777
||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 913 GCGGTACTAGCCACGGTTTCGGATGAGGGAAGCTTGGTTGCGGTTCAGCTCACCCTTGAT 972
Query 778 TTCAAACCGAATCTACCACAGGAGAAGGAGCGGATAATTGGCTGCAAAGGGCGGGTTTTC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TTCAAACCGAATCTACCACAGGAGAAGGAGCGGATAATTGGCTGCAAAGGGCGGGTTTTC 1032
Query 838 TGTCTAGATGATGAGCCGGGAGTCCATCGTGTGTGGCAGCCAGACGCAGAAACACCGGGG 897
|||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1033 TGTCTAGAAGATGAGCCGGGAGTCCACCGTGTGTGGCAACCGGACGCAGAAACACCGGGG 1092
Query 898 CTCGCAATGTCAAGAGCATTCGGAGACTACTGTATTAAAGAGTATGGATTGGTCTCAGTC 957
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1093 CTCGCAATGTCAAGAGCGTTCGGAGACTACTGTATCAAAGAGTATGGATTGGTCTCAGTC 1152
Query 958 CCTGAAGTCACTCAAAGACACATCTCTACTAAAGACCACTTCATAATCTTGGCCAGTGAT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1153 CCTGAAGTCACTCAAAGACACATCTCTACTAAAGACCACTTCATAATCTTGGCTAGTGAT 1212
Query 1018 GGGATATGGGATGTGATCTCTAACCAAGAGGCTATAGAGATTGTCTCCTCAACGGCTGAG 1077
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1213 GGGATATGGGATGTGATCTCTAACCAAGAGGCTATAGAGATCGTCTCCTCGACGGCTGAG 1272
Query 1078 CGGCCTAAGGCGGCTAAGCGATTAGTAGAGCAAGCGGTTCGGGCTTGGAAGAAAAAGAGA 1137
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1273 CGGCCTAAAGCGGCTAAGCGGTTAGTAGAGCAAGCGGTTCGGGCTTGGAAGAAAAAGAGA 1332
Query 1138 CGAGGATACTCCATGGATGATATGTCAGTCGTCTGCCTCTTCCTCCATTCTTCTTCATCG 1197
||||||| ||||||||| |||||||| || |||||||| |||||||||||||||||||||
Sbjct 1333 CGAGGATTCTCCATGGACGATATGTCTGTGGTCTGCCTTTTCCTCCATTCTTCTTCATCG 1392
Query 1198 TCATCTCTATCACAACATCATCATGCCATGACGATTTTAAAGTAAAACTTTGTGTTGTAA 1257
|||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||
Sbjct 1393 TCATCTCTATCACAACATCATCATGCCACGAC--TTT-AAAGTAAAACTTTGCGTTGTAA 1449
Query 1258 ATAG 1261
||||
Sbjct 1450 ATAG 1453
> Ahg477856 jgi|Araly1|477856|fgenesh2_kg.3__557__AT3G05640.2
Length=1479
Score = 761 bits (412), Expect = 0.0
Identities = 894/1122 (80%), Gaps = 52/1122 (5%)
Strand=Plus/Plus
Query 117 AAAGATGGGACATTTCTCATCGATGTTCAATGGAT-TAGCTCGATCATTTTCTATAAAGA 175
||| |||||||||||||| || |||||||| || | ||||| |||| || || || ||||
Sbjct 251 AAA-ATGGGACATTTCTCTTCCATGTTCAACGG-TATAGCTAGATCCTTCTCGATCAAGA 308
Query 176 AAGTGAAGAACAACAA-TGGAAACTGCGACGCAAAGGAAGCTGCTGATGAGATGGCAAGC 234
||| ||||||||||| | ||| || |||| |||||||| | ||||| ||||| ||
Sbjct 309 AAGCCAAGAACAACAACAGCAAA-AGCTACGCGAAGGAAGCCACAGATGAAATGGCGAGA 367
Query 235 GAGGCTAAGAAAAAAGAATTGATTCTGAAATCCTCTGGTTATGTTAATGTACAAGGATCT 294
||||| |||||||| ||||||||||||| ||||||||||| |||||| | | || |||
Sbjct 368 GAGGCGAAGAAAAAGGAATTGATTCTGAGATCCTCTGGTTGCATTAATGCAGATGGTTCT 427
Query 295 AATAATTTAGCCTCTCTTTTCTCCAAACGCGGCGAAAAAGGCGTTAATCAGGATTGTG-C 353
||||| || || ||| ||||||| | |||||| || ||||||||||||||||| | || |
Sbjct 428 AATAACTTGGCTTCTGTTTTCTCTAGACGCGGTGAGAAAGGCGTTAATCAGGACTCTGCC 487
Query 354 ACTCGTTTGGGAGGGATTTGGGTGCCAAGAAGACATGATCTTCTGCGGGATATTCGATGG 413
| |||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||
Sbjct 488 A-TCGTCTGGGAGGGATTTGGATGTCAAGAAGACATGATCTTCTGTGGGATATTTGATGG 546
Query 414 ACACGGTCCATGGGGTCACTATGTAGCCAAACAAGTAAGAAACTCAATGCCTTTGTCGCT 473
||||||||| ||||| |||| ||| | |||||||| || |||||||||||| | || |
Sbjct 547 ACACGGTCCCTGGGGACACTTTGTTTCTAAACAAGTCAGGAACTCAATGCCTCTATC-TT 605
Query 474 T-CTTTGCAACTGGCAAA-AGATTCTTGCTCAGGCCAC-TCTAGAACCCGAGCTCGACCT 530
| || ||||||||| ||| ||| |||| ||||| |||| | ||| | || | ||
Sbjct 606 TGCTCTGCAACTGG-AAACAGACTCTTTCTCAGACCACAT-TAG----C-AG--AG-CC- 654
Query 531 CGAAGGCTCTAATaaaaaaaTCT-CA-AGATTCGACATATGGAAGCAATCCTATCTAAAA 588
| | || ||||| || || | |||| ||| ||||| | || || || |||
Sbjct 655 C----G-----AT--AAAAAGCTACAGCGGTTCGCCATCTGGAAATACTCATACCTCAAA 703
Query 589 ACGTGTGCAA-CGGTTGATCAAGAGCTTGAACATCACCGCAAGATCGATTCTTACTATAG 647
|| |||| || | || |||| |||||||| |||||||| ||||||||||||| | | ||
Sbjct 704 ACATGTG-AAGCTGTCGATCGGGAGCTTGAGCATCACCGAAAGATCGATTCTTTCAACAG 762
Query 648 CGGCACAACAGCTCTAACCATTGTGAGACAGGGTGAAGTTATTTATGTAGCAAATGTAGG 707
||| || || ||||||||| |||||||||||||||| ||||||||| ||||||| || ||
Sbjct 763 CGGTACGACTGCTCTAACCGTTGTGAGACAGGGTGATGTTATTTATATAGCAAACGTTGG 822
Query 708 CGATTCAAGAGCGGTACTAGCCATGGAGTCGGATGAGGGAAGCTTGGTTGCGGTTCAGCT 767
|||||| | || ||| |||||| || || || || |||||||||||||||||||||||
Sbjct 823 GGATTCACGCGCAGTATTAGCCACGGTTTCAGACGAAGGAAGCTTGGTTGCGGTTCAGCT 882
Query 768 CACCCTCGATTTCAAACCGAATCTACCACAGGA-GAAGGAGCGGATAATTGGCTGCAAAG 826
||| | ||||||||||| || || || ||||| ||| ||||||||||| || ||||| |
Sbjct 883 CACTGTAGATTTCAAACCAAACCTGCCGCAGGAGGAA-GAGCGGATAATCGGATGCAACG 941
Query 827 GGCGGGT-TTTCTGTCTAGATGATGAGCC-GGGAGTCCATCGTGTGTGGCAGCCAGACGC 884
|| | || ||| || || | || ||||| ||| ||||| ||||||||||| ||||| |
Sbjct 942 GGAGAGTATTT-TGCCTTCAGGACGAGCCAGGG-GTCCACCGTGTGTGGCAACCAGAAG- 998
Query 885 A-GAAACACCGGGGCTCGCAATGTCAAGAGCATTCGGAGACTACTGTATTAAAGAGTATG 943
| ||| | || || ||||||||||||||||||||||||||||| ||||| ||||| || |
Sbjct 999 AGGAATCTCCAGGACTCGCAATGTCAAGAGCATTCGGAGACTATTGTATCAAAGATTACG 1058
Query 944 GATTGGTCTCAGTCCCTGAAGTCACTCAAAGACACATCTCTACTAAAGACCACTTCATAA 1003
||||||||||||| |||||||||||||| || || || || | || |||||| || ||||
Sbjct 1059 GATTGGTCTCAGTGCCTGAAGTCACTCAGAGGCATATATCCATTAGAGACCAGTTTATAA 1118
Query 1004 TCTTGGCCAGTGATGGGATATGGGATGTGATCTCTAACCAAGAGGCTATAGAGATTGTCT 1063
|||| |||| ||||||| ||||||||||||| || ||||||||||| |||| ||||| |
Sbjct 1119 TCTTAGCCACTGATGGGGTATGGGATGTGATATCAAACCAAGAGGCCATAGCTATTGTTT 1178
Query 1064 CCTCAACGGCTGAGCGGCCTAAGGCGGCTAAGCGATTAGTAGAGCAAGCGGTTCGGGCTT 1123
| || || || |||||||| ||||| || || ||| | ||| ||||||||||| | ||||
Sbjct 1179 CGTCGACCGCAGAGCGGCCAAAGGCTGCCAAACGACTGGTACAGCAAGCGGTTAGAGCTT 1238
Query 1124 GGAAGAAAAAGAGACGAGGA-TACTCCATGGATGATATGTCAGTCGTCTGCCTCTTCCTC 1182
|||| | ||||||||| ||| | | ||||||||||||| || | ||| |||||||| ||
Sbjct 1239 GGAATAGAAAGAGACGCGGAAT-CGCCATGGATGATATCTCTGCCGTGTGCCTCTTTTTC 1297
Query 1183 CATTC-T--TCTTCATCGTCATCTCTATCA-CAACATCATCA 1220
||||| | ||||| ||| |||| |||| | ||||||| |||
Sbjct 1298 CATTCCTCATCTTCGTCGCCATCACTAT-AGCAACATCTTCA 1338
> Ahg479146 jgi|Araly1|479146|fgenesh2_kg.3__1847__AT3G16800.2
Length=1330
Score = 104 bits (56), Expect = 2e-21
Identities = 167/218 (77%), Gaps = 18/218 (8%)
Strand=Plus/Plus
Query 292 TCTAATA-ATTTAGCCTCTCTTT-TCTCCAA-ACGCGGCGAAAAAGGCGTTAATCAGGAT 348
||||| | ||||| ||||| ||| | || || | | || || ||||| | || || |||
Sbjct 339 TCTAAGAGATTTA-CCTCTATTTGT-TCTAATA-GAGGTGAGAAAGGAATCAACCAAGAT 395
Query 349 TGTGC-ACTCGTTTGGGAGGGATTTGGGTGCCAAGAAGACATGATC-TTCTGCGGGATAT 406
|||| ||| |||||||||||||||||||||||||||||||| | | || || ||||| |
Sbjct 396 CGTGCAACT-GTTTGGGAGGGATTTGGGTGCCAAGAAGACATAA-CATTTTGTGGGATGT 453
Query 407 TCGATGGACACGGTCCATGGGGTCACTATG-TAGCCAAACAAG-TAAGAAACTCAATGCC 464
| |||||||| || |||||||| || | || |||||||| | | ||| ||| ||| | ||
Sbjct 454 TTGATGGACATGGACCATGGGGACA-TGTGATAGCCAAA-AGGGTAAAAAAGTCATTCCC 511
Query 465 TT-TGTCGCTTCTTTGCAACTGGCAA-AAGATTCTTGC 500
| || || |||||| | |||||| || | ||||||
Sbjct 512 AGCT-TCTCTGCTTTGCCAGTGGCAACAA-ACTCTTGC 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50246004606
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5