BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27945.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489619 jgi|Araly1|489619|fgenesh2_kg.6__2753__AT5G27570.1 1116 0.0
Ahg491360 jgi|Araly1|491360|fgenesh2_kg.7__793__AT4G33270.1 987 0.0
Ahg347582 jgi|Araly1|347582|fgenesh1_pg.C_scaffold_5000974 671 0.0
Ahg344325 jgi|Araly1|344325|fgenesh1_pg.C_scaffold_4000667 638 0.0
Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1 464 7e-130
Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1 348 7e-95
Ahg353278 jgi|Araly1|353278|fgenesh1_pg.C_scaffold_7000451 320 1e-86
Ahg942291 jgi|Araly1|942291|scaffold_602835.1 307 1e-82
Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1 243 3e-63
> Ahg489619 jgi|Araly1|489619|fgenesh2_kg.6__2753__AT5G27570.1
Length=1233
Score = 1116 bits (604), Expect = 0.0
Identities = 807/904 (89%), Gaps = 17/904 (2%)
Strand=Plus/Plus
Query 382 TTGGGAGACACTGTTTACTTGTGGGATGCGTCTAGTTG-TTATACATCTAAGCTTGTGAC 440
||||| || || |||||||| ||||||| ||||| || || |||||||| |||||||||
Sbjct 325 TTGGGCCACTCTATTTACTTGCGGGATGCTTCTAG-TGATTCTACATCTATGCTTGTGAC 383
Query 441 CATTGATGATGAGAATGGACCTGTCACAAGTATTAACTGGACGCAAGATGGTCTTG-A-T 498
|||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||| | |
Sbjct 384 TATTGATGAAGAGAAGGGACCTGTCACAAGTATTAACTGGATGCAAGATGG--TTGTACT 441
Query 499 CTGGCAGTTGGTCTTGACAACAGTGAAGTCCAGGTTTGGGATTGTGTTTCCAATCGTCAT 558
|| ||| |||||||||||||| |||||| ||| ||||||||| || ||| ||| ||||
Sbjct 442 CTCGCAATTGGTCTTGACAACTCTGAAGTGCAGATTTGGGATTCTGCTTCGAATAGTCAA 501
Query 559 GTGAGAACATTGAGAGGTGGTCACGAGTCAAGAGTAGGATCATTGGCATGGAACAATCAC 618
||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 502 CTGAGAACATTGAGAGGTGGTCACCAGACAAGAGTAGGATCATTAGCATGGAACAATCAC 561
Query 619 ATTCTAACAACTGGAGGAATGGATGGAAAGATCGTCAACAATGATGTGAGGATCAGATCA 678
|| |||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||
Sbjct 562 ATCCTAACAACTGGAGGAAGGGATGGAAAAATCATCAACAATGATGTGAGGATCAGATCA 621
Query 679 TCCATTATTGGAACTTACGTGGGTCACACTGAAGAGGTTTGTGGTCTTAAGTGGTCAGAA 738
|| ||| | |||| |||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 622 TCAATTGTGGGAAGTTACTTGGGTCACACTGATGAGGTTTGTGGTCTTAAGTGGTCAGAA 681
Query 739 TCTGGaaaaaaaCTAGCAAGTGGTGGTAACGACAATGTAGTACACATATGGGATCGTTCT 798
||||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 682 TCTGGGAAACAATTAGCAAGTGGTGGTAACGACAAGGTAGTACACATATGGGATCGTTCT 741
Query 799 CTCGCTTCCTCAAACCCAACTAGGCAATGGCTGCATAGGTTTGAGGAACATACTGCTGC- 857
||||| ||||||||| |||||||| ||||| |||| |||||||||| |||||| |||||
Sbjct 742 CTCGCATCCTCAAACTCAACTAGGAAATGGTTGCAGAGGTTTGAGGGACATACAGCTGCT 801
Query 858 AGTGAGAGCTCTTGCGTGGTGCCCTTTCCAAGC-AAGTTTGCTTGCAACTGGTGGTGGTG 916
| || ||||||||| ||||| || |||||||| || |||||||||||||||||||||||
Sbjct 802 A-CGAAAGCTCTTGCATGGTGTCCATTCCAAGCGAA-TTTGCTTGCAACTGGTGGTGGTG 859
Query 917 TTGGAGATGGGAAGATTAACTTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAG 976
| |||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 860 TAGGAGATAGGACTATTAAGTTCTGGAATACACACACTGGTGCTTGCTTGAATTCAGTAG 919
Query 977 AAACTGGCTCTCAAGTATGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAGTTGCTTAGC 1035
|||||||||||||||| ||||||||||||||||| || ||| |||||||||||||||||
Sbjct 920 AAACTGGCTCTCAAGTTTGTTCATTGTTATGGAGTAATAAG-GAAAGAGAGTTGCTTAGT 978
Query 1036 GCACATGGGTTTACGCAGAACCAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATG 1095
||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 979 TCACATGGGTTTACACAGAACCAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATA 1038
Query 1096 GCTGAACTCAATGGTCATACATCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGT 1155
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1039 GCTGAACTCAATGGTCATACATCAAGAGTTCTTTATATGGCACAGAGTCCGGATGGTTGT 1098
Query 1156 ACCGTGGCTTCAGCAGCAGGTGACGAGACTCTCAGGCTTTGGAATGTTTTTGGAG-A--A 1212
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |
Sbjct 1099 ACTGTGGCTTCAGCAGCAGGAGACGAGACTCTTAGGCTTTGGAATGTTTTTGGAGTACCA 1158
Query 1213 CCACCTAAGACCACCAAGAAAGCTGCTTCaaaaaaaTATACGG-AGCCATTTGCTCATGT 1271
||||| ||||||||||| ||||||||| ||||| |||| | | || |||| |||||||
Sbjct 1159 CCACCAAAGACCACCAAAAAAGCTGCTCCAAAAGCATAT-CTGCAGATATTTTCTCATGT 1217
Query 1272 GAAT 1275
||||
Sbjct 1218 GAAT 1221
> Ahg491360 jgi|Araly1|491360|fgenesh2_kg.7__793__AT4G33270.1
Length=1494
Score = 987 bits (534), Expect = 0.0
Identities = 781/900 (87%), Gaps = 17/900 (2%)
Strand=Plus/Plus
Query 389 ACACTGTTTACTTGTGGGATGCGTCTAGTTGTTATACATCTAAGCTTGTGACCATTGATG 448
||||||| |||||||||||||| || | | ||| ||||||| ||||||||||||||||||
Sbjct 586 ACACTGTCTACTTGTGGGATGCTTCCACTGGTTCTACATCTGAGCTTGTGACCATTGATG 645
Query 449 ATGAGAATGGACCTGTCACAAGTATTAACTGGACGCAAGATGGTCTTGATCTGGCAGTTG 508
| ||||| ||||||||||||||||| |||||| | | ||||||| | || | |||||||
Sbjct 646 AGGAGAAGGGACCTGTCACAAGTATCAACTGGGCTCCTGATGGTCGTCATGTTGCAGTTG 705
Query 509 GTCTTGACAACAGTGAAGTCCAGGTTTGGGATTGTGTTTCCAATCGTCATGTGAGAACAT 568
| || ||||| |||||||||| ||||||||| || |||||| ||||| |||||||||
Sbjct 706 GGCTCAACAACTCTGAAGTCCAGCTTTGGGATTCTGCTTCCAACCGTCAACTGAGAACAT 765
Query 569 TG-AGAGGTGGTCACGAGTCAAGAGTAGGATCATTGGCATGGAACAATCACATTCTAACA 627
|| || ||||||||| ||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 766 TGAAG-GGTGGTCACCAGTCAAGAGTAGGATCACTGGCATGGAACAATCACATCCTTACT 824
Query 628 ACTGGAGGAATGGATGGAAAGATCGTCAACAATGATGTGAGGATCAGATCATCCATTATT 687
|||||||||||||||||| |||| | |||||||||||||||||||||||| ||||| ||
Sbjct 825 ACTGGAGGAATGGATGGACTGATCATTAACAATGATGTGAGGATCAGATCACCCATTGTT 884
Query 688 GGAACTTACGTG-GGTCACACTGAAGAGGTTTGTGGTCTTAAGTGGTCAGAATCTGGaaa 746
| ||||||| | ||||||||| ||||||||||||| || |||||||||| ||||||| |
Sbjct 885 GAAACTTAC-AGAGGTCACACTCAAGAGGTTTGTGGGCTAAAGTGGTCAGGATCTGGACA 943
Query 747 aaaaCTAGCAAGTGGTGGTAACGACAATGTAGTACACATATGGGATCGTTCTCTCGCTTC 806
||||||||||||| || ||||||||||| ||||||||||||||||||||| | |||||
Sbjct 944 GCAACTAGCAAGTGGAGGCAACGACAATGTCGTACACATATGGGATCGTTCTGTTGCTTC 1003
Query 807 CTCAAAC-CCAACTAGGCAATGGCTGCATAGGTTTGAGGAACATAC-TGCTGCAGTGAGA 864
||||||| | ||| | |||||||||||| || ||||||||||||| | |||| |||| |
Sbjct 1004 CTCAAACTCAAAC-ACGCAATGGCTGCACAGACTTGAGGAACATACAT-CTGCTGTGAAA 1061
Query 865 GCTCTTGCGTGGTGCCCTTTCCAAGC-AAGTTTGCTTGCAACTGGTGGTGGTGTTGGAGA 923
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1062 GCTCTTGCGTGGTGCCCTTTCCAAGCGAA-TTTGCTTGCAACTGGTGGTGGTGGAGGAGA 1120
Query 924 TGGGAAGATTAACTTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGG 983
||| ||| || ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1121 CAGGACGATAAAATTCTGGAATACTCACACTGGGGCTTGCTTGAATTCAGTAGACACTGG 1180
Query 984 CTCTCAAGTATGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAGTTGCTTAGCGCACATG 1042
||| ||||| ||||| |||||||||||||| || |||||||||||||||||| ||||||
Sbjct 1181 CTCCCAAGTTTGTTCGTTGTTATGGAGCAAGAA-TGAAAGAGAGTTGCTTAGTTCACATG 1239
Query 1043 GGTTTACGCAGAACCAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATGGCTGAAC 1102
||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 1240 GGTTTACACAGAATCAGCTCACACTTTGGAAGTACCCATCCATGGTGAAAATGGCTGAGC 1299
Query 1103 TCAATGGTCATACATCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGTACCGTGG 1162
||| ||||||||||||||||||||| | |||||| |||||||| |||||||||||||| |
Sbjct 1300 TCACTGGTCATACATCAAGAGTTCTATATATGGCCCAGAGTCCTGATGGTTGTACCGTAG 1359
Query 1163 CTTCAGCAGCAGGTGACGAGACTCTCAGGCTTTGGAATGTTTTTGGAGAACCACCTAAGA 1222
||||||||||||| ||||||||||| ||| ||||||| |||||||||| |||| | ||
Sbjct 1360 CTTCAGCAGCAGGAGACGAGACTCTGAGGTTTTGGAACGTTTTTGGAGTACCAG--A-GA 1416
Query 1223 CCACCAAGAAAGCTGCTTCaaaaaaa-TATACGGAGCCATTTGCTCATGTGAATCATATT 1281
|| |||| ||||||||| ||||| | | | || |||||||| |||| ||||||| ||||
Sbjct 1417 CCGCCAAAAAAGCTGCTCCAAAAGCAGTTTCCG-AGCCATTTTCTCACGTGAATCGTATT 1475
> Ahg347582 jgi|Araly1|347582|fgenesh1_pg.C_scaffold_5000974
Length=1359
Score = 671 bits (363), Expect = 0.0
Identities = 678/825 (82%), Gaps = 42/825 (5%)
Strand=Plus/Plus
Query 403 TGGGATGCGTCTAGTTGTTATACATCTAAGCTTGTGACCATTGATGATGAGA-AT-GGAC 460
|||||||| |||||| ||| | ||| |||||||||| ||||||| ||| || ||||
Sbjct 496 TGGGATGCTTCTAGTGGTTCTGTTTCTGAGCTTGTGACTGTTGATGA--AGATATGGGAC 553
Query 461 CTGTCACAAGTATTAACTGGACGCAAGATGGTCTTGATCTGGCAGTTGGTCTTGACAACA 520
|||| ||||||||||||||| | |||||||||||| |||| || ||||| ||||| |||
Sbjct 554 CTGTTACAAGTATTAACTGGGCACAAGATGGTCTTAATCTCGCGGTTGGGCTTGATAACT 613
Query 521 GTGAAGTCCAGGTTTGGGATTGTGTTTCCAATCGTCATGTGAGAACATTG-AGAGGTGGT 579
|||||||||| ||||||||| ||| | | |||| | |||||||| ||| || ||||||
Sbjct 614 CTGAAGTCCAGCTTTGGGATTCTGTAGCTAGTCGTAAAGTGAGAACGTTGAAG-GGTGGT 672
Query 580 CACGAGTCAAGAGTAGGATCATTGGCATGGAACAATCACATTC-TAACAACTGGAGGAAT 638
||| |||||||||||||||||||||| ||||||||||| | || ||||||| ||||| ||
Sbjct 673 CACCAGTCAAGAGTAGGATCATTGGCGTGGAACAATCATA-TCTTAACAACGGGAGGTAT 731
Query 639 GGATGGAAAGATCGTCAACAATGATGTGA-GGATCAGATCATC-CATTATTG-GAACTTA 695
|||||| ||||| | ||||| ||||| | || | |||||| | | || || ||||||
Sbjct 732 GGATGGGAAGATTATTAACAACGATGT-ACGGGTTAGATCA-CACGTT-GTGAAAACTTA 788
Query 696 C-GTGGGTCACACTGAAGAGGTTTGT-GGTCTTAAGTGGTCAGAATCTGGaaaaaaaCTA 753
| | |||||||||| ||||||||| ||| | ||||||||||| |||||| | | ||
Sbjct 789 CAG-GGGTCACACTCTTGAGGTTTGTGGGT-TGAAGTGGTCAGAGTCTGGACAGCATTTA 846
Query 754 GCAAGTGGTGGTAACGACAATGTAGTACACATATGGGATCGTTCTCTCGCTTCCTCAAAC 813
||||||||||| ||||||||| | || ||| ||||||| | || || |
Sbjct 847 GCAAGTGGTGGAAACGACAATTTGGTTCACGTATGGGA--------AC-ATT-CT---A- 892
Query 814 CCAACTAGGCAATGGCTGCATAGGTTTGAGGAACATAC-TGCTGCAGTGAGAGCTCTTGC 872
| | |||| | ||||||||||||||||||| || | |||| || | ||| || ||
Sbjct 893 -C--C-AGGCGGTCTTTGCATAGGTTTGAGGAACACACAT-CTGCGGTAAAAGCACTGGC 947
Query 873 GTGGTGCCCTTTCCAAGCAAGTTTGCTTGCAACTGGTGGTGGTGTTGGAGATGGGAAGAT 932
||||||||||| ||| || |||| ||||||||||||||||||| | |||| ||| |||
Sbjct 948 TTGGTGCCCTTTTCAATCAGGTTTACTTGCAACTGGTGGTGGTGGAGAAGATAGGACGAT 1007
Query 933 TAACTTCTGGAATACAC-ACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAG 991
|| ||||||||||| | | || || |||||||||||||| ||||| |||||||| ||||
Sbjct 1008 AAAGTTCTGGAATACTCGA-ACAGGAGCTTGCTTGAATTCGGTAGACACTGGCTCACAAG 1066
Query 992 TATGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAGTTGCTTAGCGCACATGGGTTTACG 1050
| ||||| ||| |||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 1067 TTTGTTCTTTGATATGGAGCAAGAAG-GAAAGAGAGTTGCTTAGCTCACATGGGTTTACT 1125
Query 1051 CAGAACCAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATGGCTGAACTCAATGGT 1110
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1126 CAGAACCAGCTTACACTTTGGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCAATGGT 1185
Query 1111 CATACATCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGTACCGTGGCTTCAGCA 1170
||||||||| | ||||| | |||| ||||||||||||||||||||||||| |||||||||
Sbjct 1186 CATACATCACGCGTTCTATATATGTCACAGAGTCCGGATGGTTGTACCGTAGCTTCAGCA 1245
Query 1171 GCAGGTGACGAGACTCTCAGGCTTTGGAATGTTTTTGGAGAACCA 1215
||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct 1246 GCAGGGGACGAGACTCTGAGGCTTTGGAATGTTTTTGGAGTACCA 1290
> Ahg344325 jgi|Araly1|344325|fgenesh1_pg.C_scaffold_4000667
Length=1359
Score = 638 bits (345), Expect = 0.0
Identities = 675/828 (82%), Gaps = 48/828 (6%)
Strand=Plus/Plus
Query 403 TGGGATGCGTCTAGTTGTTATACATCTAAGCTTGTGACCATTGATGATGAGA-AT-GGAC 460
|||||||| |||||| ||| | ||| |||||||||| ||||||| ||| || ||||
Sbjct 496 TGGGATGCTTCTAGTGGTTCTGTTTCTGAGCTTGTGACTGTTGATGA--AGATATGGGAC 553
Query 461 CTGTCACAAGTATTAACTGGACGCAAGATGGTCTTGATCTGGCAGTTGGTCTTGACAACA 520
|||| ||||||||||||||| | |||||||||||| |||| || ||||| ||||| |||
Sbjct 554 CTGTTACAAGTATTAACTGGGCACAAGATGGTCTTAATCTCGCGGTTGGGCTTGATAACT 613
Query 521 GTGAAGTCCAGGTTTGGGATTGTGTTTCCAATCGTCATGTGAGAACATTGAGAGG-TGGT 579
|||||| ||| ||||||||| ||| | | |||| | |||||||| |||| ||| ||||
Sbjct 614 CTGAAGTACAGCTTTGGGATTCTGTAGCTAGTCGTAAAGTGAGAACGTTGA-AGGATGGT 672
Query 580 CA-CGAGTCAAGAGTAGGATCATTGGCATGGAACAATCACATTC-TAACAACTGGAGGAA 637
|| | |||||||||||||||||||||| ||||||| ||| | || ||||||| ||||| |
Sbjct 673 CATC-AGTCAAGAGTAGGATCATTGGCGTGGAACAGTCATA-TCTTAACAACGGGAGGTA 730
Query 638 TGGATGGAAAGATCGTCA-ACAATGATGTGA-GGATCAGATCATC-CATTATTG-GAACT 693
||||||| |||||| | | |||| ||||| | || | |||||| | | || || ||||
Sbjct 731 TGGATGGGAAGATCAT-AGACAACGATGT-ACGGGTTAGATCA-CACGTT-GTGAAAACT 786
Query 694 TAC-GTGGGTCACACTGAAGAGGTTTGT-GGTCTTAAGTGGTCAGAATCTGGaaaaaaaC 751
||| | |||||| ||| |||||||||| ||| | |||||||||||||||||| | |
Sbjct 787 TACAG-GGGTCATACTCTAGAGGTTTGTGGGT-TGAAGTGGTCAGAATCTGGACAGCATT 844
Query 752 TAGCAAGTGGTGGTAACGACAATGTAG-TACACATATGGGATCGTTCTCTCGCTTCCTCA 810
||||||| ||||| || || ||||| | || || ||||||| || | || ||
Sbjct 845 TAGCAAGCGGTGGCAATGAAAATGTTGTTA-ACGTATGGGA-------CT-G-TT-CT-- 891
Query 811 AACCCAACTAGGCAATGGCTGCATAGGTTTGAGGAACATAC-TGCTGCAGTGAGAGCTCT 869
||| ||| | ||||||||||| ||||||| || | |||| || | ||||||
Sbjct 892 ------ACTGGGCGGTCTTTGCATAGGTTTCAGGAACACACAT-CTGCGGTTAAAGCTCT 944
Query 870 TGCGTGGTGCCCTTTCCAAGCAAGTTTGCTTGCAACTGGTGGTGGTGTTGGAGATGGGAA 929
|| ||||||||||| ||| || |||| ||||||||||||||||||| | |||| |||
Sbjct 945 GGCCTGGTGCCCTTTTCAATCAGGTTTACTTGCAACTGGTGGTGGTGGAGAAGATAGGAC 1004
Query 930 GATTAACTTCTGGAATACAC-ACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTC 988
||| || ||||||||||| | | || || |||||||||||||| ||||| |||||||| |
Sbjct 1005 GATAAAGTTCTGGAATACTCGA-ACAGGAGCTTGCTTGAATTCGGTAGACACTGGCTCAC 1063
Query 989 AAGTATGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAGTTGCTTAGCGCACATGGGTTT 1047
|||| ||||| ||| |||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 1064 AAGTTTGTTCTTTGATATGGAGCAACAAG-GAAAGAGAGTTGCTTAGCTCACATGGGTTT 1122
Query 1048 ACGCAGAACCAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATGGCTGAACTCAAT 1107
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1123 ACTCAGAACCAGCTTACACTTTGGAAGTACCCATCCATGGTGAAAATGGCTGAGCTCAAT 1182
Query 1108 GGTCATACATCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGTACCGTGGCTTCA 1167
|||||||||||| | ||||| | |||| |||||||||||||||||||||| || ||||||
Sbjct 1183 GGTCATACATCACGCGTTCTATATATGACACAGAGTCCGGATGGTTGTACTGTAGCTTCA 1242
Query 1168 GCAGCAGGTGACGAGACTCTCAGGCTTTGGAATGTTTTTGGAGAACCA 1215
|||||||| ||||||||||| ||| |||||||||||||||||| ||||
Sbjct 1243 GCAGCAGGAGACGAGACTCTGAGGTTTTGGAATGTTTTTGGAGTACCA 1290
> Ahg489532 jgi|Araly1|489532|fgenesh2_kg.6__2666__AT5G27945.1
Length=1290
Score = 464 bits (251), Expect = 7e-130
Identities = 333/371 (90%), Gaps = 12/371 (3%)
Strand=Plus/Plus
Query 1 ATGATGAAGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCTCCAATGGTTCTGTCC 60
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGATGACGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCACCAATGGTTCTGTCC 60
Query 61 ATTGTTGATTATGGTGATTCTCAGGAGAAGACAATAGATTCGTTGTGGAAGAAACCGCAC 120
||||||||| ||| || | |||||||||||||| ||||||||||||||||||| ||||
Sbjct 61 ATTGTTGATGATG---ATCCACAGGAGAAGACAATGGATTCGTTGTGGAAGAAACGGCAC 117
Query 121 GGCTCTGACCTAACTTGGTCTGGTTTTTCTCGGGTTGGAGTAACAGAAGCTTATTTTGCA 180
| ||||||||||||| ||||||||| | || || |||||||||||||||||||| ||| |
Sbjct 118 GTCTCTGACCTAACTCGGTCTGGTTCT-CT-GG-TTGGAGTAACAGAAGCTTATCTTGTA 174
Query 181 GTACCCGTAGACCACTTTCTAACGAATCCTCCATCTCTAAGACTTTCTCAGACAATTTAT 240
||||||||||||||||||||||||||||| ||||||||| |||||||| || | |||
Sbjct 175 ATACCCGTAGACCACTTTCTAACGAATCCTTCATCTCTAACACTTTCTCCGAGAGCTTAC 234
Query 241 TGTCGTCGAGGATCTTCTTACGTAGAAACAGAGAAAGTGGAAGAAGAAGACAGAGACGAT 300
||||||||||||||||||||||||| |||||||||||||||||| || || || ||||
Sbjct 235 TGTCGTCGAGGATCTTCTTACGTAGTAACAGAGAAAGTGGAAGA-GA-GA--GA--CGAT 288
Query 301 TTCTTGAAGCAAGTTTGGTTTCTCACAGACAATTTGGTTTTCTTCTTCGTCGACATTGAA 360
|||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 289 TTCTTGAAACAAGTTTGGTTTCTCAGAGAGAGTTTGGTTTTCTTCTTCGTCGACATTGAA 348
Query 361 GAATACATTGT 371
|||| ||||||
Sbjct 349 GAATCCATTGT 359
Score = 427 bits (231), Expect = 9e-119
Identities = 280/303 (92%), Gaps = 5/303 (2%)
Strand=Plus/Plus
Query 937 TTCTGGAATACACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTATGT 996
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 957 TTCTGGAAT--ACACACTGGGGCTTGCTTGAATTCAGTAGAAACTGGCTCTCAAGTTTGT 1014
Query 997 TCATTGTTATGGAGCAAAAGTGAAAGAGAGTTGCTTAGCGCACATGGGTTTACGCAGAAC 1056
|||||||||||||| |||||||||||| |||| |||||| ||||||||||||| |||||
Sbjct 1015 TCATTGTTATGGAGAAAAAGTGAAAGACAGTTACTTAGCTCACATGGGTTTACACAGAAT 1074
Query 1057 CAGCTTACACTTTGGAAGTACCCATCTATGGTGAAAATGGCTGAACTCAATGGTCATACA 1116
|||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 1075 CAGCTTACACTTTGGAAGTATCCATCTATGTTGAAAATGGCTGAACTCACTGGTCATACA 1134
Query 1117 TCAAGAGTTCTTTTTATGGCACAGAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAGGT 1176
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 TCAAGAGTTCTTTATATGGCACAAAGTCCGGATGGTTGTACCGTGGCTTCAGCAGCAGGA 1194
Query 1177 GACGAGACTCTCAGGCTTTGGAATGTTTTTGGAGAACCACCTAAGACCACCAAGAAAGCT 1236
||||||||||| ||| |||||||||||| ||||| |||| | ||||||||||||||||
Sbjct 1195 GACGAGACTCTTAGGTTTTGGAATGTTTCTGGAGTACCAG--A-GACCACCAAGAAAGCT 1251
Query 1237 GCT 1239
|||
Sbjct 1252 GCT 1254
Score = 143 bits (77), Expect = 3e-33
Identities = 93/101 (92%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 533 TTTGGGATTGTGTTTCCAATCGTCATGTGAGAACATTGAGAGGTGGTCACGAGTCAAGAG 592
||||||||| ||||||||||||||| |||||||||||| |||| ||||| |||||||||
Sbjct 648 TTTGGGATTCTGTTTCCAATCGTCAACTGAGAACATTGAAAGGTTGTCACCAGTCAAGAG 707
Query 593 TAGGATCATTGGCATGGAACAATCACATTCTAACAACTGGA 633
| ||||||||| |||||||||||||||||||||||||||||
Sbjct 708 TTGGATCATTGACATGGAACAATCACATTCTAACAACTGGA 748
> Ahg489617 jgi|Araly1|489617|fgenesh2_kg.6__2751__AT5G27070.1
Length=834
Score = 348 bits (188), Expect = 7e-95
Identities = 250/279 (90%), Gaps = 7/279 (3%)
Strand=Plus/Minus
Query 1 ATGATGA-AGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCTCCAATGGTTCTGTC 59
||||||| | ||||||| ||||||||||||||||||||||||||| ||| || |||||||
Sbjct 568 ATGATGACA-TCGATAGGTCTTGCTCTGTGTTTGACACACCATTCACCAGTGATTCTGTC 510
Query 60 CATTGTTGATT-ATGGTGATTCTCAGGAGAAGACAATAGATTCGTTGTGGAAGAAACCGC 118
|||||||| || ||| |||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 509 CATTGTTG-TTGATGATGATCCTCAGGAGAAGACAATGGATTCGTTGTGGAAGAAACCAC 451
Query 119 ACGGCTCTGACCTAACTTGGTCTGGTTTTTCTCGGGTTGGAGTAACAGAAGCTTATTTTG 178
||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 450 ACGGCTCTGACCTAACTCGGTCTGG--TTT-TCGGGTTGGAGTAACAGAAGCTTATCTTG 394
Query 179 CAGTACCCGTAGACCACTTTCTAACGAATCCTCCATCTCTAAGACTTTCTCAGACAATTT 238
| ||||||||||||||||||||||||||||| ||||||||| |||||||| || | ||
Sbjct 393 TAATACCCGTAGACCACTTTCTAACGAATCCTTCATCTCTAAAACTTTCTCCGAGAGCTT 334
Query 239 ATTGTCGTCGAGGATCTTCTTACGTAGAAACAGAGAAAG 277
|| |||||||||||||||||| | ||| |||||||||||
Sbjct 333 ATCGTCGTCGAGGATCTTCTTCCTTAGCAACAGAGAAAG 295
> Ahg353278 jgi|Araly1|353278|fgenesh1_pg.C_scaffold_7000451
Length=384
Score = 320 bits (173), Expect = 1e-86
Identities = 244/278 (88%), Gaps = 5/278 (2%)
Strand=Plus/Plus
Query 908 GTGGTGGTGTTGGAGATGGGAAGATTAACTTCTGGAATACACACACTGGGGCTTGCTTGA 967
||||||||| |||||| ||||||| || ||||||||||| |||||||||||||||||||
Sbjct 101 GTGGTGGTGGAGGAGATAGGAAGATCAAATTCTGGAATACTCACACTGGGGCTTGCTTGA 160
Query 968 ATTCAGTAGAAACTGGCTCTCAAGTATGTTCATTGTTATGGAGCAA-AAGTGAAAGAGAG 1026
|||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||| ||||
Sbjct 161 ATTCAGTAGACACTGGCTCTCAAGTTTGTTCGTTGTTGTGGAGCAAGAA-TGAAACAGAG 219
Query 1027 TTGCTTAGCGCACATGGGTTTACGCAGAACCAGCTTACACTTTGGAAGTAC---CCATCT 1083
||||||||| |||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct 220 TTGCTTAGCTCACACGGGTTTACACAGAATCAGCTCACACTTTGGAAGTATGATCCATCC 279
Query 1084 ATGGTGAAAATGGCTGAACTCAATGGTCATACATCAAGAGTTCTTTTTATGGCACAGAGT 1143
||||||||||||||||| |||| ||||||||||||||||||||| | |||||| |||| |
Sbjct 280 ATGGTGAAAATGGCTGAGCTCACTGGTCATACATCAAGAGTTCTGTATATGGCCCAGATT 339
Query 1144 CCGGATGGTTGTACCGTGGCTTCAGCAGCAGGTGACGA 1181
|| |||||||||||||| ||||||||| ||| |||||
Sbjct 340 CCTGATGGTTGTACCGTAGCTTCAGCACCAGCAGACGA 377
> Ahg942291 jgi|Araly1|942291|scaffold_602835.1
Length=859
Score = 307 bits (166), Expect = 1e-82
Identities = 242/278 (87%), Gaps = 8/278 (3%)
Strand=Plus/Minus
Query 1 ATGATGAAGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCTCCAATGGTTCTGTCC 60
||||||| |||||||| |||| ||||| ||||| ||||||||| ||||||||| |||||
Sbjct 597 ATGATGACGTCGATAGGTCTTTCTCTGCGTTTGGCACACCATTGACCAATGGTTTTGTCC 538
Query 61 ATTGTTGATTATGGTGATTCTCAGGAGAAGACAATAGATTCGTTGTGGAAGAAACCGCAC 120
||||||| ||| |||| | ||||| |||||||| |||||||||||||||||||| |||
Sbjct 537 ATTGTTG---ATGATGATCCACAGGAAAAGACAATGGATTCGTTGTGGAAGAAACCACAC 481
Query 121 GGCTCTGACCTAACTTGGTCTGGTTTTTCTCGGGTTGGAGTAACAGAAGCTTATTTTGCA 180
||||||||||||||| | ||||| ||||| |||||||||||||||||||||| ||| |
Sbjct 480 GGCTCTGACCTAACTCGATCTGG---TTCTCTGGTTGGAGTAACAGAAGCTTATCTTGTA 424
Query 181 GTACCCGTAGACCACTTTCTAACGAATCCTCCATCTCTAAGACTTTCTC-AGACAATTTA 239
||||||||||||||||||||||||||||| ||||||||| |||||||| | | | |||
Sbjct 423 ATACCCGTAGACCACTTTCTAACGAATCCTTCATCTCTAACACTTTCTCCA-AGAGCTTA 365
Query 240 TTGTCGTCGAGGATCTTCTTACGTAGAAACAGAGAAAG 277
|||||||||||||||||||| | ||| |||||||||||
Sbjct 364 TTGTCGTCGAGGATCTTCTTCCTTAGCAACAGAGAAAG 327
Score = 139 bits (75), Expect = 4e-32
Identities = 85/90 (94%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 282 AGAAGAAGACAGAGACGATTTCTTGAAGCAAGTTTGGTTTCTCACAGACAATTTGGTTTT 341
||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 107 AGAAGAAGAGAGAGACGATTTCTTGAAACAAGTTTGGTTTCTCAGAGACAATTTAGTTTT 48
Query 342 CTTCTTCGTCGACATTGAAGAATACATTGT 371
||||||||||||||||||||||| ||||||
Sbjct 47 CTTCTTCGTCGACATTGAAGAATCCATTGT 18
> Ahg489614 jgi|Araly1|489614|fgenesh2_kg.6__2748__AT5G27944.1
Length=651
Score = 243 bits (131), Expect = 3e-63
Identities = 235/282 (83%), Gaps = 19/282 (7%)
Strand=Plus/Minus
Query 1 ATGATGAAGTCGATAGCTCTTGCTCTGTGTTTGACACACCATTCTCCAATGGT--TCTGT 58
||||||| ||||||||||||||||||||||||| | || | ||||||| | |||
Sbjct 574 ATGATGACGTCGATAGCTCTTGCTCTGTGTTTG----A-CA---T-CAATGGTGAT-TGT 525
Query 59 CCATTGTTGATTATGGT-GATT--CTCAGGAGAAGACAATAGATTCGTTGTGGAAGAAAC 115
||| |||| || | ||| | ||||||||||||| |||||||||||||||||||
Sbjct 524 -TGTTGATGATGATCCTCAATTAGCGAAGGAGAAGACAATGGATTCGTTGTGGAAGAAAC 466
Query 116 CGCACGGCTCTGACCTAACTTGGTCTGGTTTTTCTCGGGTTGGAGTAACAGAAGCTTATT 175
| |||||||||||||||||| | | ||| |||||||||||||||||| ||||||||
Sbjct 465 CACACGGCTCTGACCTAACTCGATTTGG---TTCTCGGGTTGGAGTAACTTAAGCTTATC 409
Query 176 TTGCAGTACCCGTAGACCACTTTCTAACGAATCCTCCATCTCTAAGACTTTCTCAGACAA 235
||| | ||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 408 TTGTAATACCCGTAGACCACTTTCTAACGAATCCTTCATCTCTAAGACTTTCTCCGAGAG 349
Query 236 TTTATTGTCGTCGAGGATCTTCTTACGTAGAAACAGAGAAAG 277
||||||||||||||||||||||| | ||| |||||||||||
Sbjct 348 CTTATTGTCGTCGAGGATCTTCTTCCTTAGCAACAGAGAAAG 307
Score = 134 bits (72), Expect = 2e-30
Identities = 82/87 (94%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 282 AGAAGAAGACAGAGACGATTTCTTGAAGCAAGTTTGGTTTCTCACAGACAATTTGGTTTT 341
||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 87 AGAAGAAGAGAGAGACGATTTCTTGAAACAAGTTTGGTTTCTCAGAGACAATTTAGTTTT 28
Query 342 CTTCTTCGTCGACATTGAAGAATACAT 368
||||||||||||||||||||||| |||
Sbjct 27 CTTCTTCGTCGACATTGAAGAATCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5