BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27950.1
Length=3098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489620 jgi|Araly1|489620|fgenesh2_kg.6__2754__AT5G27950.1 3819 0.0
> Ahg489620 jgi|Araly1|489620|fgenesh2_kg.6__2754__AT5G27950.1
Length=2927
Score = 3819 bits (2068), Expect = 0.0
Identities = 2619/2871 (91%), Gaps = 93/2871 (3%)
Strand=Plus/Plus
Query 68 tttcttttagattgtttttGATCCTGAAATGCTCAAAAAGTCGTCGTACTAATCCACTAT 127
||||||||||||| ||||| ||| || ||||||||||||||| | ||| || | |
Sbjct 25 TTTCTTTTAGATTATTTTTCATCTTGCAATGCTCAAAAAGTC--C--ACT-AT----T-T 74
Query 128 CGTGTTGGAAGATGAAACAGAGTGAAAGAGACAGAAGAAACAAGAACCATTTGTGAAATC 187
||||||||||||||||||| ||| |||||||||||||| | | ||||| |||||||
Sbjct 75 --TGTTGGAAGATGAAACAGAATGAGAGAGACAGAAGAAAGATGTTTCATTTCTGAAATC 132
Query 188 AAGAACCATCATTATTCCATCACCAGACACAGAATTGTTCAATCATTTGACAAAAACCTT 247
|||||||||||| ||| |||||||||||| |||||||||| | ||||||| ||
Sbjct 133 AAGAACCATCATCATT-CATCACCAGACAAAGAATTGTTC-A--ATTTGAC---AA---- 181
Query 248 CTAATCCATACCCTTTTGTC-AAAATC---AACACTTGGGTTTTCAATAGTTTATAGCTT 303
|||||||||||||||||| |||||| ||||| || ||| | | || ||||||||
Sbjct 182 --AATCCATACCCTTTTGTCAAAAATCAAAAACACATGTGTTGT---T-GTCTATAGCTT 235
Query 304 TAAACCCATAAGAACGAATCTGGTTCTGTTTCTCTGG-T--T-A--A-T-----GATTGA 351
|||||||||| || ||||||||||||||||||||||| | | | | | ||||||
Sbjct 236 TAAACCCATATGAGCGAATCTGGTTCTGTTTCTCTGGCTAATGATGATTCACGAGATTGA 295
Query 352 GATT-CTTCAAAGTTTTGAttttttttGTAGATTGCTTCATCTTCAATTTTCACTTTTCA 410
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 GATTCCTTAAAAGTTTTGATTTTTTTTATAGATTGCTTCATCTTCAATTTTCACTTTTCT 355
Query 411 TTTGTATTAAACATTTTCTTGTTCCGAGGGGTTTTCTTGTTTCTGACAAATaaaaaaaaa 470
||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 356 TTTGTATTAAATAATTTCTTGTTCCGAGGGGTTTTCTTGTTTCTGACAAAT---AAAAAC 412
Query 471 CTTTCCTTTTCTCTCTCTGTTTTGAATTTACATTAATCAATTATCTGTCTCCTGAGGTTT 530
||||||||||||||||||| | |||| | ||||||||||||||||||||| ||||| |||
Sbjct 413 CTTTCCTTTTCTCTCTCTGCTGTGAACTAACATTAATCAATTATCTGTCT-CTGAGTTTT 471
Query 531 TATGACAACTCAAGTTGTCTTCTTGTTCAAAGTTCTGCAATAAATTATAATAATTGATAA 590
|||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 472 TATGACAACTCAAGTTGTCTTCTTGTTCAAAGTTGTGCAAT-AATTATAATAA-TGATAA 529
Query 591 GTTTAGAGTTCTTTTTCCTTTGTTCCTAACTACCATTC-TTTACATTGGATACGTTGAGT 649
|||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 530 GTTTAGTGTTGTTTTTCCTTTGTTCCTAACTACCATTCTTTTACATTGGATACGTTGAGT 589
Query 650 TTGTTGTCTTTGTCTCCATTCCACTCCCACTTCCACttttttttttGTCAGATATTGGAT 709
||||||||||||||||||||||||| |||||| | | | ||| ||||||||| |||||||
Sbjct 590 TTGTTGTCTTTGTCTCCATTCCACTTCCACTT-C-C-TCTTTGTTTGTCAGAAATTGGAT 646
Query 710 CTCGTTCAGGTCAAATGTTGATTTCAGCTGAAAAAGGAGAGATCTTGATCCCTCAATCTC 769
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CTCGTTCAAGTCAAATGTTAATTTCAGCTGAAAAAGGAGAGATCTTGATCCCTCAATCTC 706
Query 770 CACTTAGCTCTGAATCTGTTGTTCCTTTGGTCTATACTGATGTCAATGTTGTTCCTGAAC 829
|| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 707 CAGTTAGCTCTGAATCAGTTGTTCCTTTGGTCTATACTGATGTAAATGTTGTTCCTGAAC 766
Query 830 ATGAAAGTAATCAGCTTGAGAAGTCAATATCAAACCTTGAAGAAGAAGTTTTTGAATTGA 889
||||||| ||||||||||| |||||||| ||||||||||||| |||||||| || ||||
Sbjct 767 ATGAAAGGAATCAGCTTGAAAAGTCAATTTCAAACCTTGAAGGGGAAGTTTTGGAGTTGA 826
Query 890 AGTTGAAGCTTAAGTCTTTGGATGAAAAGAGAAAGCAAGTTCTGAATAAGATTATAGACA 949
||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 827 AGTCAAAGCTAAAGTCATTGGAGGAAAAGAGAAGGGAAGTTCTGAATAAGATTATAGACA 886
Query 950 CTAAAGGAAGTATACGTGTGTTTTGTAGAGTTAGACCATTTCTATTAACGGAAAGGAGAC 1009
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 887 CTAAAGGAAGTATACGTGTGTTTTGTAGAGTTAGGCCATTTCTATTGACGGAAAGGAGAC 946
Query 1010 CGATTAGGGAACCTGTTTCGTTTGGACCAGATAATGTTGTTATAAGATCTGCTGGAAGTA 1069
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 947 CGATTAGGGAACCTGTTTCGTTTGGACCTGATAATGTTGTTATAAGATCTGCTGGAAGTC 1006
Query 1070 GTAAA-GAATTTGAGTTTGATAAAGTTTTTCATCAATCAGCAACTCAAGAAGAAGTTTTC 1128
| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1007 G-AAAGGAATTTGAGTTTGATAAGGTTTTTCATCAATCAGCAACTCAAGAAGACGTTTTC 1065
Query 1129 GGAGAAGTGAAACCGATTCTTAGATCTGCTCTTGATGGTCACAATGTATGTGTCTTGGCG 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1066 GGAGAAGTGAAACCGATTCTTAGATCTGCTCTTGATGGTCACAATGTATGTGTTTTGGCG 1125
Query 1189 TATGGTCAAACGGGAACTGGCAAGACTTTTACCATGGATGGCACAAGTGAGCAACCAGGT 1248
|||||||||||||| |||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 1126 TATGGTCAAACGGGGACTGGCAAGACTTTCACAATGGATGGCACAAATGAGCAACCAGGT 1185
Query 1249 CTTGCTCCTAGAGCTATTAAAGAGCTTTTCAATGAAGCTTCAATGGA-CCAAACACATTC 1307
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1186 CTTGCTCCTAGAGCTATTAAAGAGCTTTTCAATGAAGCTTCAATGGATCC-TACACATTC 1244
Query 1308 CGTGACATTTAGGATGAGTATGTTGGAAATCTACATGGGTAACTTGAAAGATTTGTTGTC 1367
|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1245 CGTGACTTTTAAAATGAGTATGTTGGAAATCTACATGGGTAACCTGAAAGATTTGTTGTC 1304
Query 1368 TGCAAGACAGTCTTTGAAGTCATATGAAGCCTCAGCTAAATGTAACCTTAATATTCAAGT 1427
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1305 TGCAAGACAGTCTTTGAAGTCATATGAAGCCTCACCTAAATGCAACCTTAATATTCAAGT 1364
Query 1428 AGACTCAAAGGGTTCGGTTGAAATTGAGGGTTTGACTGAAGTGGAAGTAATGGATTTTAC 1487
||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1365 AGACTTAAAGGGTTCGGTCGAAATTGAGGGTTTGACTGAAGTGGAAGTACCGGATTTTAC 1424
Query 1488 AAAGGCTAGATGGTGGTATAACAAAGGGAGACGAGTGAGATCAACTTCTTGGACAAATGT 1547
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AAAGGCTAGATGGTGGTACAACAAAGGGAGACGAGTGAGATCAACTTCTTGGACAAATGT 1484
Query 1548 AAACGAAACTTCGAGCAGATCTCATTGTTTAACAAGGATCACGATCTTTCGTCGTGGAGA 1607
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1485 AAACGAAACTTCGAGCAGATCTCATTGTTTAACAAGGATCACAATCTTTCGTCGTGGGGA 1544
Query 1608 TGCGGTGGGGTCAAAAACTGAAGTTAGCAAGCTTTGGATGATAGATCTTGGAGGAAGTGA 1667
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1545 TGCTGTGGGGTCAAAAACTGAAGTTAGCAAGCTTTGGATGATAGATCTTGGAGGAAGCGA 1604
Query 1668 GAGGCTCTTGAAAACAGGAGCTATAGGGCAAACTATGGATGAAGGTAGAGCCATAAACCT 1727
||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1605 GAGGCTCTTGAAAACTGGAGCTATAGGGCAAACAATGGATGAAGGAAGGGCCATAAACCT 1664
Query 1728 CTCACTTTCCGCTCTTGGAGACGTGATTGCAGCGTTAAGGAGAAAGAAGGGACATGTGCC 1787
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1665 CTCACTTTCAGCTCTTGGAGACGTGATTGCAGCATTAAGGAGAAAGAAGGGACATGTGCC 1724
Query 1788 TTACAGAAACAGCAAGCTAACTCAAATTCTTAAAGATTCTCTAGGTACTAGATCAAAAGT 1847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1725 TTACAGAAACAGCAAGCTAACTCAAATTCTTAAAGATTCTCTAGGTACTAGATCAAAGGT 1784
Query 1848 TCTGATGCTTGTGCACATAAGTCCACGTGATGAAGATGTTGGTGAAACAATCTGCTCTCT 1907
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1785 TCTGATGCTTGTGCACATAAGTCCACGTGATGAAGATGTTGGTGAAACAATTTGCTCGCT 1844
Query 1908 CAGCTTTACTAAACGTGCGAGAGCTGTAGAGTCTAACAGAGGATTAACAGCAGAACTACA 1967
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1845 GAGCTTTACAAAACGTGCGAGAGCCGTAGAGTCTAACAGAGGATTAACAGCAGAACTCCA 1904
Query 1968 AAAGCTAAGAGAAAAGAAAATATCGGAACTTGAAGAGGAAATG-GAAGAAACTCAAGA-A 2025
||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
Sbjct 1905 AAAGCTAAGAGAAAAGAAAATATCGGAACTTGAAGTGGAAATGCG-AGAAACTCAAGACA 1963
Query 2026 GGTTGCAAGAAGATCAAAGCGCGGTTACAGGAAGTAGAGTGTCTGGTTAATGAACACAAG 2085
|||||||||||||||||||||||||||||||| ||| |||||| ||| |||| |||||
Sbjct 1964 -ATTGCAAGAAGATCAAAGCGCGGTTACAGGAAGCAGAATGTCTGCTTAGTGAAAACAAG 2022
Query 2086 AAACTCTTTTGGATCACCAATGATAAGTATCTAGAAGACATTGAAAAGAAAGCTATTTCG 2145
|||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2023 AAACTCTTTTGGATCATCAATGATAAGCATCTAGAAGACATCGAAAAGAAAGCTATTTCG 2082
Query 2146 CCTTTAGATCATCTGA-AAGACACCGATGCAACTCCAATATCATCTGATAAACTAGTCAA 2204
|||||||||||||| | |||| || ||||| || |||| ||||||||||||||||| |||
Sbjct 2083 CCTTTAGATCATCT-ACAAGAGACGGATGCGACCCCAAAATCATCTGATAAACTAGCCAA 2141
Query 2205 AATAAGGAAGAGTTCTGGTTTTGTCCCACGTTTCATGACTTCAACTGTTGCTAGTCGCCA 2264
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 AATAAGCAAGAGTTCTGGTTTTGTCCCACGTTTCATGACTTCAACTGTTGCTAGTCGCCA 2201
Query 2265 AAGGCAAACAATGTCAGAGAAGGAAATCAATGCAAAGGCTCAGAGCATACGATCAGTGGC 2324
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2202 AAGGCAAACAATGTCAGAGAAGGAAATCAATGCAAAGTCTCAGAGCATACGATCAATGGT 2261
Query 2325 TAAAAATCTTACTCAGTTCTCCACTTCTCAGTCGCTTAGTCTCTCTGACTCACG-AAGCA 2383
|||||| || ||||| ||||||||||||||||| ||||| |||||||||||||| || ||
Sbjct 2262 TAAAAACCTCACTCAATTCTCCACTTCTCAGTCCCTTAGCCTCTCTGACTCACGCAA-CA 2320
Query 2384 AAGCTCTCCTAAGAAGATCATACACAAAACCGCTTCAAGCTGCAGCTAACAGTGGAACAC 2443
|| |||||| ||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 2321 GAGTTCTCCTTAGAAGATCATACACAAAGCCGCTTCAAGCTACAGCTAACAGTGGAACAA 2380
Query 2444 CACCAGAAACGCCTAAAAGACATATCAAAGATAATTCTTTACAGAGAAAGAATATGAATG 2503
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2381 CACCAGAAACGCCTAAAAGACATATCAAGGATAATTCTTTACAGAGAAAGAATATGAATG 2440
Query 2504 ATACTTCTTCACCAAGGAGCAAGATGGTTACTTCATCGGATCCAAATGTGAGAGCTAAAC 2563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2441 ATACTTCTTCACCAAGGAGCAAGATGGTTACTTCATCGGATCCAAATGTGAGAGCTAAAC 2500
Query 2564 TGTGTCACCACAAACGAAGAATGTCAAGCTTGACATGATCTAACAGTTATCTTTCTTTTC 2623
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2501 TGTGTCACCACAGACGAAGAATGTCAAGCTTGACATGATCTAACAGTGATCTTTCTTTTC 2560
Query 2624 CATCTGTTGTGAAAGTGCTGAGT-TGTTTTTAGACTTGTGGTTTGAGCCTGAGTAGGATG 2682
||||| ||||||||||||||||| || || || | | | || |||| | ||
Sbjct 2561 CATCTCTTGTGAAAGTGCTGAGTATG-----AGCCT-GAG-TAGGA---TGAG--GT-TG 2607
Query 2683 AGGCGGTGTCCTCCA-TAGAAACCACTTGG-CTAATGGTCCCATTTTAAGACCATTGGAA 2740
|||||| ||| | || | | | | || | | | | | |||||| || |||| |||
Sbjct 2608 AGGCGGC--CCTG-AGTA-AGGCGA-T-GGTCGACTCG-CG-ATTTTAGGAGCATTTGAA 2659
Query 2741 CTCGTGGAGTTTGCGGTTCTGGTTTTAAAAGGATATGTTTTGTTTGTGATTGTTTCACAG 2800
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2660 CTTGTGGATTTTGCAGTTCTGGTTTTAAAAGGATATGTTTTGTTTGTGATTGTTTCTCAA 2719
Query 2801 AATTTTTCTTTGGGTTGGTGATAGTTTGGTGTTGGATGTTTGTATGGGGTTCACAGAAAC 2860
|||| | ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 2720 AATTCT-CTTTGGGTTGGTGATAGTTTGATGTTGGTTGTTTTTATGGGGTTCACAGAAAC 2778
Query 2861 TGGATCATAATTAATATTCCAGATTCTTTCTTCTTTGGAGGGTTCAGAGAG 2911
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2779 TGGATCATAATTAATATTCCAGATTCTGTCTTCTTTGGAGGGTTCAGAGAG 2829
Score = 137 bits (74), Expect = 4e-31
Identities = 91/98 (93%), Gaps = 5/98 (5%)
Strand=Plus/Plus
Query 2966 AGGGTTTTATTTTGTCATCTTTTGAAGTTCTTGATGGCACAATAGTGTTGTGGATA---- 3021
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2830 AGGGTTTTATTTTGTCATCTTTTGAAGTTCTTGATGGCACAATAGTGTTGTGGATTTTGG 2889
Query 3022 CTTCATTGTATCTTACGTTTTT-GTTTGTTTGTAACAA 3058
|||||||||||||||| ||||| |||||||||||||||
Sbjct 2890 CTTCATTGTATCTTACTTTTTTTGTTTGTTTGTAACAA 2927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117013232640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5