BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27980.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489622 jgi|Araly1|489622|fgenesh2_kg.6__2756__AT5G27980.1 1107 0.0
> Ahg489622 jgi|Araly1|489622|fgenesh2_kg.6__2756__AT5G27980.1
Length=710
Score = 1107 bits (599), Expect = 0.0
Identities = 675/712 (95%), Gaps = 4/712 (1%)
Strand=Plus/Plus
Query 25 aaagagagaaagagttaccccaaaaa-aTGAGCGAAGAACAGCTGCAGAAACCTATAGAT 83
||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAAGAGAGAAAAATTTA-CCCAAAAATATGAGCGAAGAACAGCTGCAGAAACCTATAGAT 59
Query 84 TGTGCTGATGTAAAAGGAGAGGCAGAGAAGATTTCGACAACGGAGGGAGGCATTAAGGCG 143
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 TGTGTTGATGTAAAAGGAGAGGCAGAGAAGATTTCGACAACGGAGGGAAGCATTAAGGCA 119
Query 144 GCGGAGGACAAAGAGAAAGGTGTTGTAGCCGAGGCCTCCGGTGAACAGGCGGAGGGAGAA 203
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 GCGGAGGACAAAGAGAAAGGTGTTGTAGCCGAGGCCTCCGGTGAACAGGCCGAGGGAGAA 179
Query 204 GTTAACCAGAAAAAGGTGGTAGCTAATCCTCTGAAATCGGAAGGAACCATAACAATTGGA 263
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 GTTAACCAGAAAAAGGTGGTAGCTAATCCTCTGAAATCAGAAGGAACCATAACAATTGGA 239
Query 264 GAGGCTCTAGAGGCAGCGGTTCTCACGGCAGGGAATAAGCCGGTGGAGTGGAGTGACGCA 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 GAGGCTCTAGAGGCAGCGGTTCTCACGGCAGGGAATAAGCCGGTGGAGTGGAGTGATGCA 299
Query 324 GCCGCCATTCAAGCGGCCGAGGTTAGAGCTACGGGGCGGACCAATATCATGCCCGGCGGT 383
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 300 GCCGCCATTCAAGCGGCCGAGGTTAGAGCCACGGGGCGGACCAACATCATGCCCGGTGGT 359
Query 384 GTTGCGGCTTCAGCTCAATCAGCCGCCACTCTTAATGCTCGTATCGGCTCTGACGATACC 443
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 GTTGCGGCTTCAGCTCAATCAGCCGCCACTCTTAATGCTCGTGTCGGCTCTGACGATACC 419
Query 444 AAGACTACGCTAGCCGACGTTCTCACTGGAGCGAGTAGCAAATTACCATCGGATAAAGCA 503
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 420 AAGACTACGCTAGCCGACGTTCTCACTGGAGCGAGTAGCAAATTACCGTCGGACAAAGCA 479
Query 504 GCAACGAGAAAGGACGCAGAGGGAGTGACTGGCGCCGAGATGAGGAACGATCCTCATCTC 563
||||||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 480 GCAACGAGAAAAGACGCTGAGGGAGTGACAGGCGCAGAGATGAGAAACGATCCTCATCTC 539
Query 564 ACTACATACCCAACCGGTGTGGCTGCCTCTGTCGCTGCCGCCGCTCGGATCAATCAGTCC 623
||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 540 ACTACTTACCCAACCGGCGTGGCCGCCTCTGTTGCTGCCGCCGCTCGGATCAATCAGTC- 598
Query 624 AAA-TGATGCAATTCTTCTTTCTTGTTATTGAGAAGCAAGTTTATATAAACTTAAACAAA 682
||| | || ||||||||| || ||| ||||||||||||||||||||||||||||| |||
Sbjct 599 AAAGTAATACAATTCTTCATTATTGGTATTGAGAAGCAAGTTTATATAAACTTAATTAAA 658
Query 683 TGTATATATGTTGATCTATATAAGATTCTCAAGTTTTTAATTTTACCTAATT 734
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 659 TGTATATATGTTGATGTATATAAGATTTTCAAGTTTTTACTTTTACCTAATT 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5