BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27980.1 Length=738 Score E Sequences producing significant alignments: (Bits) Value Ahg489622 jgi|Araly1|489622|fgenesh2_kg.6__2756__AT5G27980.1 1107 0.0 > Ahg489622 jgi|Araly1|489622|fgenesh2_kg.6__2756__AT5G27980.1 Length=710 Score = 1107 bits (599), Expect = 0.0 Identities = 675/712 (95%), Gaps = 4/712 (1%) Strand=Plus/Plus Query 25 aaagagagaaagagttaccccaaaaa-aTGAGCGAAGAACAGCTGCAGAAACCTATAGAT 83 ||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 AAAGAGAGAAAAATTTA-CCCAAAAATATGAGCGAAGAACAGCTGCAGAAACCTATAGAT 59 Query 84 TGTGCTGATGTAAAAGGAGAGGCAGAGAAGATTTCGACAACGGAGGGAGGCATTAAGGCG 143 |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 60 TGTGTTGATGTAAAAGGAGAGGCAGAGAAGATTTCGACAACGGAGGGAAGCATTAAGGCA 119 Query 144 GCGGAGGACAAAGAGAAAGGTGTTGTAGCCGAGGCCTCCGGTGAACAGGCGGAGGGAGAA 203 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 120 GCGGAGGACAAAGAGAAAGGTGTTGTAGCCGAGGCCTCCGGTGAACAGGCCGAGGGAGAA 179 Query 204 GTTAACCAGAAAAAGGTGGTAGCTAATCCTCTGAAATCGGAAGGAACCATAACAATTGGA 263 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 180 GTTAACCAGAAAAAGGTGGTAGCTAATCCTCTGAAATCAGAAGGAACCATAACAATTGGA 239 Query 264 GAGGCTCTAGAGGCAGCGGTTCTCACGGCAGGGAATAAGCCGGTGGAGTGGAGTGACGCA 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 240 GAGGCTCTAGAGGCAGCGGTTCTCACGGCAGGGAATAAGCCGGTGGAGTGGAGTGATGCA 299 Query 324 GCCGCCATTCAAGCGGCCGAGGTTAGAGCTACGGGGCGGACCAATATCATGCCCGGCGGT 383 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 300 GCCGCCATTCAAGCGGCCGAGGTTAGAGCCACGGGGCGGACCAACATCATGCCCGGTGGT 359 Query 384 GTTGCGGCTTCAGCTCAATCAGCCGCCACTCTTAATGCTCGTATCGGCTCTGACGATACC 443 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 360 GTTGCGGCTTCAGCTCAATCAGCCGCCACTCTTAATGCTCGTGTCGGCTCTGACGATACC 419 Query 444 AAGACTACGCTAGCCGACGTTCTCACTGGAGCGAGTAGCAAATTACCATCGGATAAAGCA 503 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 420 AAGACTACGCTAGCCGACGTTCTCACTGGAGCGAGTAGCAAATTACCGTCGGACAAAGCA 479 Query 504 GCAACGAGAAAGGACGCAGAGGGAGTGACTGGCGCCGAGATGAGGAACGATCCTCATCTC 563 ||||||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 480 GCAACGAGAAAAGACGCTGAGGGAGTGACAGGCGCAGAGATGAGAAACGATCCTCATCTC 539 Query 564 ACTACATACCCAACCGGTGTGGCTGCCTCTGTCGCTGCCGCCGCTCGGATCAATCAGTCC 623 ||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct 540 ACTACTTACCCAACCGGCGTGGCCGCCTCTGTTGCTGCCGCCGCTCGGATCAATCAGTC- 598 Query 624 AAA-TGATGCAATTCTTCTTTCTTGTTATTGAGAAGCAAGTTTATATAAACTTAAACAAA 682 ||| | || ||||||||| || ||| ||||||||||||||||||||||||||||| ||| Sbjct 599 AAAGTAATACAATTCTTCATTATTGGTATTGAGAAGCAAGTTTATATAAACTTAATTAAA 658 Query 683 TGTATATATGTTGATCTATATAAGATTCTCAAGTTTTTAATTTTACCTAATT 734 ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct 659 TGTATATATGTTGATGTATATAAGATTTTCAAGTTTTTACTTTTACCTAATT 710 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27181639821 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5