BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G27990.1
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942410 jgi|Araly1|942410|scaffold_602954.1 675 0.0
> Ahg942410 jgi|Araly1|942410|scaffold_602954.1
Length=595
Score = 675 bits (365), Expect = 0.0
Identities = 506/572 (88%), Gaps = 17/572 (3%)
Strand=Plus/Plus
Query 147 TTGACGGTGGAGGCTAGGGATATACTGAAAGAAGGAATCGGTTTGATACTTTGGCGGTGG 206
||||||| ||||| ||||| | |||||| |||||||| ||||||||||| ||||| |||
Sbjct 30 TTGACGGAGGAGGGTAGGGCTGTACTGAGTGAAGGAATTGGTTTGATACTCTGGCGATGG 89
Query 207 ACTGCTATGCGAGCCGCCGTCGAAAACGGTTGGGGCGGCCGAGACTCTCAAGCCAAAGCC 266
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 90 ACCGCTATGCGAGCCGCCGTCGAAAACGGTTGGGGCGGCCGAGACTCTCAAGCGAAAGCT 149
Query 267 AACGAAACCGTTGCCACTGTTTTCGACTTTTTCATCCAATCAAAAGATCCAGTGAAGG-A 325
| | |||||| ||||||||||| | ||||| | ||||||||| ||||||| |||| |
Sbjct 150 GATGGCACCGTTTCCACTGTTTTCAAATTTTTAACCCAATCAAACGATCCAGC-AAGGGA 208
Query 326 CATTGAGAA-ATTAGGTGACCTTCTAGATAAAGGTCTTGATGAGCTTAATACTACAGCTG 384
|||||| || |||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 209 CATTGA-AACATTAGGTGACATTTTAGATAAAGGTCTTGATGAGCTTAATACTACGGCTG 267
Query 385 AAGATGGAAGTGTCGATGAGGTGGCGAACT-TACTAGTAGATTTGTACGAAGATTGCTGT 443
|||||||||| |||||||||||||| ||| | ||| |||||||||| ||||||||||||
Sbjct 268 AAGATGGAAGCGTCGATGAGGTGGCAAACACT-CTAATAGATTTGTATGAAGATTGCTGT 326
Query 444 AACGGTAACTATGAAATGCTTGAGGAACTAAGGGCAACTT-ATTCTCAGACGAGTGCAAG 502
|||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 327 AACGATAACTATGAAATGCTTGAGGAACTAAGGGCAACTAGAT-CTCAGGCGAGTGCAAG 385
Query 503 TGTTGTCAAGGTTTCAAACGGTGATGACGAGGAAAGTGATGATGAAGATGA------TGA 556
|||||| ||||||||||||||| | || ||||||||||||||||||||||| |||
Sbjct 386 TGTTGTTAAGGTTTCAAACGGTAACGATGAGGAAAGTGATGATGAAGATGAGGACAATGA 445
Query 557 TCAAACCACTGACATGATGGTGGATGCGTCTAACCAGAAACAAGAAGCCATGCCTGTTGA 616
||||||||| |||||||||||||| || ||||||||||||| ||||| |||||| |||||
Sbjct 446 TCAAACCACAGACATGATGGTGGAGGCATCTAACCAGAAACCAGAAGTCATGCCGGTTGA 505
Query 617 TGAACCAG-TAGCCGATGATGGTTGGACGGTTGTTTCGTCTAGAAAAAACAAGGGAAAGA 675
|||||||| || ||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct 506 TGAACCAGCTA-CCGATGATGGTTGGACGGTAATTTCATCGAGAAAAAACAAGGGAAAGA 564
Query 676 GGAATTAACCCGGTTTTGATCCCCAAGGTGTT 707
|||||||||| ||||||||| |||||||||||
Sbjct 565 GGAATTAACC-GGTTTTGATTCCCAAGGTGTT 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31794512778
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5