BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G27990.1 Length=859 Score E Sequences producing significant alignments: (Bits) Value Ahg942410 jgi|Araly1|942410|scaffold_602954.1 675 0.0 > Ahg942410 jgi|Araly1|942410|scaffold_602954.1 Length=595 Score = 675 bits (365), Expect = 0.0 Identities = 506/572 (88%), Gaps = 17/572 (3%) Strand=Plus/Plus Query 147 TTGACGGTGGAGGCTAGGGATATACTGAAAGAAGGAATCGGTTTGATACTTTGGCGGTGG 206 ||||||| ||||| ||||| | |||||| |||||||| ||||||||||| ||||| ||| Sbjct 30 TTGACGGAGGAGGGTAGGGCTGTACTGAGTGAAGGAATTGGTTTGATACTCTGGCGATGG 89 Query 207 ACTGCTATGCGAGCCGCCGTCGAAAACGGTTGGGGCGGCCGAGACTCTCAAGCCAAAGCC 266 || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 90 ACCGCTATGCGAGCCGCCGTCGAAAACGGTTGGGGCGGCCGAGACTCTCAAGCGAAAGCT 149 Query 267 AACGAAACCGTTGCCACTGTTTTCGACTTTTTCATCCAATCAAAAGATCCAGTGAAGG-A 325 | | |||||| ||||||||||| | ||||| | ||||||||| ||||||| |||| | Sbjct 150 GATGGCACCGTTTCCACTGTTTTCAAATTTTTAACCCAATCAAACGATCCAGC-AAGGGA 208 Query 326 CATTGAGAA-ATTAGGTGACCTTCTAGATAAAGGTCTTGATGAGCTTAATACTACAGCTG 384 |||||| || |||||||||| || ||||||||||||||||||||||||||||||| |||| Sbjct 209 CATTGA-AACATTAGGTGACATTTTAGATAAAGGTCTTGATGAGCTTAATACTACGGCTG 267 Query 385 AAGATGGAAGTGTCGATGAGGTGGCGAACT-TACTAGTAGATTTGTACGAAGATTGCTGT 443 |||||||||| |||||||||||||| ||| | ||| |||||||||| |||||||||||| Sbjct 268 AAGATGGAAGCGTCGATGAGGTGGCAAACACT-CTAATAGATTTGTATGAAGATTGCTGT 326 Query 444 AACGGTAACTATGAAATGCTTGAGGAACTAAGGGCAACTT-ATTCTCAGACGAGTGCAAG 502 |||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||| Sbjct 327 AACGATAACTATGAAATGCTTGAGGAACTAAGGGCAACTAGAT-CTCAGGCGAGTGCAAG 385 Query 503 TGTTGTCAAGGTTTCAAACGGTGATGACGAGGAAAGTGATGATGAAGATGA------TGA 556 |||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| Sbjct 386 TGTTGTTAAGGTTTCAAACGGTAACGATGAGGAAAGTGATGATGAAGATGAGGACAATGA 445 Query 557 TCAAACCACTGACATGATGGTGGATGCGTCTAACCAGAAACAAGAAGCCATGCCTGTTGA 616 ||||||||| |||||||||||||| || ||||||||||||| ||||| |||||| ||||| Sbjct 446 TCAAACCACAGACATGATGGTGGAGGCATCTAACCAGAAACCAGAAGTCATGCCGGTTGA 505 Query 617 TGAACCAG-TAGCCGATGATGGTTGGACGGTTGTTTCGTCTAGAAAAAACAAGGGAAAGA 675 |||||||| || ||||||||||||||||||| |||| || ||||||||||||||||||| Sbjct 506 TGAACCAGCTA-CCGATGATGGTTGGACGGTAATTTCATCGAGAAAAAACAAGGGAAAGA 564 Query 676 GGAATTAACCCGGTTTTGATCCCCAAGGTGTT 707 |||||||||| ||||||||| ||||||||||| Sbjct 565 GGAATTAACC-GGTTTTGATTCCCAAGGTGTT 595 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31794512778 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5