BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28000.1 Length=495 Score E Sequences producing significant alignments: (Bits) Value Ahg351787 jgi|Araly1|351787|fgenesh1_pg.C_scaffold_6002380 710 0.0 Ahg489630 jgi|Araly1|489630|fgenesh2_kg.6__2764__AT5G28010.1 484 2e-136 > Ahg351787 jgi|Araly1|351787|fgenesh1_pg.C_scaffold_6002380 Length=495 Score = 710 bits (384), Expect = 0.0 Identities = 459/496 (93%), Gaps = 2/496 (0%) Strand=Plus/Plus Query 1 ATGGCAGAGACTACAAAGGAGATGCCAAAATCTTCTCTATGGGGAGAGGTTGAGGTAGAA 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGCAGAGACTACAAAGGAGATGCCAAAGTCTTCTCTATGGGGAGAGGTTGAGGTAGAA 60 Query 61 GTTGACATCAAATCTCCTGCTGAAAAATTCTACCAAGTGTATGTAGGAAGACCAGACCAT 120 |||||||| ||| ||||||||| ||||||||||| ||||||| |||||||||||||||| Sbjct 61 GTTGACATAAAAGCTCCTGCTGCGAAATTCTACCATGTGTATGCAGGAAGACCAGACCAT 120 Query 121 GTCGCTAAAGCCACTTCTAGCAAAGTGCAAGCATGTGATCTGCTTGAAGGGGAATGGGGC 180 ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 121 GTCGCTAAAGCAACTTCTAGCAAAGTGCAGGCATGTGATCTGCTCGAAGGGGAATGGGGC 180 Query 181 ACCATAAGCAGTATTGTCAACTGGAACTACGTTTATGCGGGCAAGGCAAAGGTGGCAAAA 240 | | || |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 ATCGTAGGCAGTATTGTCAACTGGAACTACGTTTATGCGGGGAAGGCAAAGGTGGCAAAA 240 Query 241 GAGAGAATCGAATTAGTAGAACCGGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGA 300 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 241 GAGAGAATCGAATTAGTGGAACCAGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGA 300 Query 301 GATGTTTTGGCTGTGTACAAGAACTTCTTTATCACGATTTCAG-TGACCCCGAAGGAAGG 359 ||||||||||| || ||||||| |||||| ||||||||| | | |||||||||||||||| Sbjct 301 GATGTTTTGGCCGTTTACAAGAGCTTCTTGATCACGATT-CGGGTGACCCCGAAGGAAGG 359 Query 360 AGGGGTTGGAAGTGTGGCGAAATGGCACCTTGAGTACGAGAAGAATGATGTGAATGTGCC 419 || |||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||| Sbjct 360 AGAGGTTGGAAGTGTGGTGAAATGGCATCTTGAGTACGAGAAAAATGATGAGAATGTGCC 419 Query 420 TGACCCCGAGAATTTTCTCCCTTTCTTAGCTGAGATGACTAAAGAGATCGATGAACACCT 479 | |||| | |||||||| |||||||||||||||||||| |||||||| || |||||||| Sbjct 420 TCACCCTTATAATTTTCTTCCTTTCTTAGCTGAGATGACCAAAGAGATTGACGAACACCT 479 Query 480 CTTATCCGAGGAATAG 495 |||||| ||||||||| Sbjct 480 CTTATCTGAGGAATAG 495 > Ahg489630 jgi|Araly1|489630|fgenesh2_kg.6__2764__AT5G28010.1 Length=495 Score = 484 bits (262), Expect = 2e-136 Identities = 410/482 (85%), Gaps = 8/482 (2%) Strand=Plus/Plus Query 17 AGGAGATGCCAAAAT-CTTCTCTATGGGGAGAGGTTGAGGTAGAAGTTGACATCAAATCT 75 ||| |||||| |||| ||||||||| |||||| |||||||||||||||| |||||| || Sbjct 17 AGGCGATGCC-AAATCCTTCTCTATTAGGAGAGCTTGAGGTAGAAGTTGAGATCAAAGCT 75 Query 76 CCTGCTGAAAAATTCTACCA-AGTGTATGTAGGAAGACCAGACCATGTCGCTAAAGCCAC 134 || || | || ||||||||| | | |||| |||||||||| ||||||| ||||||||||| Sbjct 76 CCCGCGGCAACATTCTACCACA-TCTATGCAGGAAGACCACACCATGTGGCTAAAGCCAC 134 Query 135 TTCTAGCAAAGTGCAAGCATGTGATCTGCTTGAAGGGGAATGGGGCACCATAAGCAGTAT 194 | || |||| || ||| |||||||||| | || ||||||||||| ||| || |||| || Sbjct 135 TCCTCGCAACGTCCAATCATGTGATCTCCACGATGGGGAATGGGGTACCGTAGGCAGCAT 194 Query 195 TGTCAACTGGAACTACGTTTATG-CGGGCAAGGCAAAGGTGGCAAAAGAGAGAATCGAAT 253 ||| |||||||||||| ||| |||||| |||||||||||||||||||| || |||| Sbjct 195 CGTCTTTTGGAACTACGTTCATGAGGGGCAA-GCAAAGGTGGCAAAAGAGAGGATTGAAT 253 Query 254 TAGTAGAACCGGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGAGATGTTTTGGCTG 313 ||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||| | Sbjct 254 TAGTAGAGCCAGAGAAGAAACTGATAAAGTTTAGGGTCATAGAAGGAGATGTTATGGCCG 313 Query 314 TGTACAAGAACTTCTTTATCACGATTTCAG-TGACCCCGAAGGAAGGAGGGGTTGGAAGT 372 |||||||| ||||| ||||||||| ||| ||||||||||| ||||||| ||||||||| Sbjct 314 AGTACAAGAGTTTCTTGATCACGATT-CAGGTGACCCCGAAGCAAGGAGGAGTTGGAAGT 372 Query 373 GTGGCGAAATGGCACCTTGAGTACGAGAAGAATGATGTGAATGTGCCTGACCCCGAGAAT 432 || | |||||||||||| || |||||||||| ||||| ||| ||| || | || |||||| Sbjct 373 GTTGTGAAATGGCACCTCGAATACGAGAAGATTGATGAGAACGTGGCTCATCCGGAGAAT 432 Query 433 TTTCTCCCTTTCTTAGCTGAGATGACTAAAGAGATCGATGAACACCTCTTATCCGAGGAA 492 | ||||||||||| || |||||||| | ||||||||| ||||||||||||||||||||| Sbjct 433 CTCCTCCCTTTCTTCGCCGAGATGACCAGAGAGATCGACGAACACCTCTTATCCGAGGAA 492 Query 493 TA 494 || Sbjct 493 TA 494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17971282419 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5