BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28000.1
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351787 jgi|Araly1|351787|fgenesh1_pg.C_scaffold_6002380 710 0.0
Ahg489630 jgi|Araly1|489630|fgenesh2_kg.6__2764__AT5G28010.1 484 2e-136
> Ahg351787 jgi|Araly1|351787|fgenesh1_pg.C_scaffold_6002380
Length=495
Score = 710 bits (384), Expect = 0.0
Identities = 459/496 (93%), Gaps = 2/496 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGAGACTACAAAGGAGATGCCAAAATCTTCTCTATGGGGAGAGGTTGAGGTAGAA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGAGACTACAAAGGAGATGCCAAAGTCTTCTCTATGGGGAGAGGTTGAGGTAGAA 60
Query 61 GTTGACATCAAATCTCCTGCTGAAAAATTCTACCAAGTGTATGTAGGAAGACCAGACCAT 120
|||||||| ||| ||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 61 GTTGACATAAAAGCTCCTGCTGCGAAATTCTACCATGTGTATGCAGGAAGACCAGACCAT 120
Query 121 GTCGCTAAAGCCACTTCTAGCAAAGTGCAAGCATGTGATCTGCTTGAAGGGGAATGGGGC 180
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 121 GTCGCTAAAGCAACTTCTAGCAAAGTGCAGGCATGTGATCTGCTCGAAGGGGAATGGGGC 180
Query 181 ACCATAAGCAGTATTGTCAACTGGAACTACGTTTATGCGGGCAAGGCAAAGGTGGCAAAA 240
| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 ATCGTAGGCAGTATTGTCAACTGGAACTACGTTTATGCGGGGAAGGCAAAGGTGGCAAAA 240
Query 241 GAGAGAATCGAATTAGTAGAACCGGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGA 300
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAGAATCGAATTAGTGGAACCAGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGA 300
Query 301 GATGTTTTGGCTGTGTACAAGAACTTCTTTATCACGATTTCAG-TGACCCCGAAGGAAGG 359
||||||||||| || ||||||| |||||| ||||||||| | | ||||||||||||||||
Sbjct 301 GATGTTTTGGCCGTTTACAAGAGCTTCTTGATCACGATT-CGGGTGACCCCGAAGGAAGG 359
Query 360 AGGGGTTGGAAGTGTGGCGAAATGGCACCTTGAGTACGAGAAGAATGATGTGAATGTGCC 419
|| |||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 360 AGAGGTTGGAAGTGTGGTGAAATGGCATCTTGAGTACGAGAAAAATGATGAGAATGTGCC 419
Query 420 TGACCCCGAGAATTTTCTCCCTTTCTTAGCTGAGATGACTAAAGAGATCGATGAACACCT 479
| |||| | |||||||| |||||||||||||||||||| |||||||| || ||||||||
Sbjct 420 TCACCCTTATAATTTTCTTCCTTTCTTAGCTGAGATGACCAAAGAGATTGACGAACACCT 479
Query 480 CTTATCCGAGGAATAG 495
|||||| |||||||||
Sbjct 480 CTTATCTGAGGAATAG 495
> Ahg489630 jgi|Araly1|489630|fgenesh2_kg.6__2764__AT5G28010.1
Length=495
Score = 484 bits (262), Expect = 2e-136
Identities = 410/482 (85%), Gaps = 8/482 (2%)
Strand=Plus/Plus
Query 17 AGGAGATGCCAAAAT-CTTCTCTATGGGGAGAGGTTGAGGTAGAAGTTGACATCAAATCT 75
||| |||||| |||| ||||||||| |||||| |||||||||||||||| |||||| ||
Sbjct 17 AGGCGATGCC-AAATCCTTCTCTATTAGGAGAGCTTGAGGTAGAAGTTGAGATCAAAGCT 75
Query 76 CCTGCTGAAAAATTCTACCA-AGTGTATGTAGGAAGACCAGACCATGTCGCTAAAGCCAC 134
|| || | || ||||||||| | | |||| |||||||||| ||||||| |||||||||||
Sbjct 76 CCCGCGGCAACATTCTACCACA-TCTATGCAGGAAGACCACACCATGTGGCTAAAGCCAC 134
Query 135 TTCTAGCAAAGTGCAAGCATGTGATCTGCTTGAAGGGGAATGGGGCACCATAAGCAGTAT 194
| || |||| || ||| |||||||||| | || ||||||||||| ||| || |||| ||
Sbjct 135 TCCTCGCAACGTCCAATCATGTGATCTCCACGATGGGGAATGGGGTACCGTAGGCAGCAT 194
Query 195 TGTCAACTGGAACTACGTTTATG-CGGGCAAGGCAAAGGTGGCAAAAGAGAGAATCGAAT 253
||| |||||||||||| ||| |||||| |||||||||||||||||||| || ||||
Sbjct 195 CGTCTTTTGGAACTACGTTCATGAGGGGCAA-GCAAAGGTGGCAAAAGAGAGGATTGAAT 253
Query 254 TAGTAGAACCGGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGAGATGTTTTGGCTG 313
||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 254 TAGTAGAGCCAGAGAAGAAACTGATAAAGTTTAGGGTCATAGAAGGAGATGTTATGGCCG 313
Query 314 TGTACAAGAACTTCTTTATCACGATTTCAG-TGACCCCGAAGGAAGGAGGGGTTGGAAGT 372
|||||||| ||||| ||||||||| ||| ||||||||||| ||||||| |||||||||
Sbjct 314 AGTACAAGAGTTTCTTGATCACGATT-CAGGTGACCCCGAAGCAAGGAGGAGTTGGAAGT 372
Query 373 GTGGCGAAATGGCACCTTGAGTACGAGAAGAATGATGTGAATGTGCCTGACCCCGAGAAT 432
|| | |||||||||||| || |||||||||| ||||| ||| ||| || | || ||||||
Sbjct 373 GTTGTGAAATGGCACCTCGAATACGAGAAGATTGATGAGAACGTGGCTCATCCGGAGAAT 432
Query 433 TTTCTCCCTTTCTTAGCTGAGATGACTAAAGAGATCGATGAACACCTCTTATCCGAGGAA 492
| ||||||||||| || |||||||| | ||||||||| |||||||||||||||||||||
Sbjct 433 CTCCTCCCTTTCTTCGCCGAGATGACCAGAGAGATCGACGAACACCTCTTATCCGAGGAA 492
Query 493 TA 494
||
Sbjct 493 TA 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17971282419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5