BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28010.1
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489630 jgi|Araly1|489630|fgenesh2_kg.6__2764__AT5G28010.1 699 0.0
Ahg351787 jgi|Araly1|351787|fgenesh1_pg.C_scaffold_6002380 497 2e-140
> Ahg489630 jgi|Araly1|489630|fgenesh2_kg.6__2764__AT5G28010.1
Length=495
Score = 699 bits (378), Expect = 0.0
Identities = 444/476 (93%), Gaps = 4/476 (1%)
Strand=Plus/Plus
Query 26 CGATGCCCAAGT-CTTCTCTTTTAGGAAAGCTTGAGGTAGAAGTTGAGATCAAAGCTCCC 84
||||| |||| | ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 20 CGATG-CCAAATCCTTCTCTATTAGGAGAGCTTGAGGTAGAAGTTGAGATCAAAGCTCCC 78
Query 85 GCGGCGATATTCTACCACATCTATGCTGGAAGACCACACCATGTTGCTAAAGCCACTCCT 144
||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 79 GCGGCAACATTCTACCACATCTATGCAGGAAGACCACACCATGTGGCTAAAGCCACTCCT 138
Query 145 CGCAACGTGCAATCATGTGATCTCCATGATGGGGAATGGGGCACCGTAGGCAGCATCGTC 204
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 139 CGCAACGTCCAATCATGTGATCTCCACGATGGGGAATGGGGTACCGTAGGCAGCATCGTC 198
Query 205 TATTGGAACTACGTTCATGAGGGACAAGCAAAGGTTGCAAAAGAGAGGATTGAATTAGTA 264
| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 199 TTTTGGAACTACGTTCATGAGGGGCAAGCAAAGGTGGCAAAAGAGAGGATTGAATTAGTA 258
Query 265 GAGCCAGAGAAGAAACTGATCAAGTTTAGGGTCATTGAAGGAGATGTTATGGCTGAGTAC 324
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 259 GAGCCAGAGAAGAAACTGATAAAGTTTAGGGTCATAGAAGGAGATGTTATGGCCGAGTAC 318
Query 325 AAGAGTTTCTTGATCACGATTCAGGTGACCCCGAAGGAAGGAGGGACT-GGAAGTGTTGT 383
|||||||||||||||||||||||||||||||||||| ||||||| | | |||||||||||
Sbjct 319 AAGAGTTTCTTGATCACGATTCAGGTGACCCCGAAGCAAGGAGG-AGTTGGAAGTGTTGT 377
Query 384 GAAATGGCACATTGAGTATGAGAAGATTGATGAGAACGTGCCTCACCCTGAGAATCTTCT 443
|||||||||| | || || ||||||||||||||||||||| |||| || |||||||| ||
Sbjct 378 GAAATGGCACCTCGAATACGAGAAGATTGATGAGAACGTGGCTCATCCGGAGAATCTCCT 437
Query 444 CCCTTTCTTCGCCGAGATGACCAAAGAGATTGACGAACACCTCTTATCCGAGGAAT 499
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 438 CCCTTTCTTCGCCGAGATGACCAGAGAGATCGACGAACACCTCTTATCCGAGGAAT 493
> Ahg351787 jgi|Araly1|351787|fgenesh1_pg.C_scaffold_6002380
Length=495
Score = 497 bits (269), Expect = 2e-140
Identities = 409/477 (86%), Gaps = 8/477 (2%)
Strand=Plus/Plus
Query 27 GATGCCCAAGTCTTCTCTTTTAGGAAAGCTTGAGGTAGAAGTTGAGATCAAAGCTCCCGC 86
|||||| ||||||||||| | ||| || |||||||||||||||| || |||||||| ||
Sbjct 21 GATGCCAAAGTCTTCTCTATGGGGAGAGGTTGAGGTAGAAGTTGACATAAAAGCTCCTGC 80
Query 87 GGCGATATTCTACCACATCTATGCTGGAAGACCACACCATGTTGCTAAAGCCACTCCTCG 146
|||| ||||||||| | ||||| ||||||||| ||||||| |||||||| ||| || |
Sbjct 81 TGCGAAATTCTACCATGTGTATGCAGGAAGACCAGACCATGTCGCTAAAGCAACTTCTAG 140
Query 147 CAACGTGCAATCATGTGATCTCCAT-GATGGGGAATGGGGCACCGTAGGCAGCATCGTCT 205
||| ||||| |||||||||| | | || ||||||||||||| ||||||||| || |||
Sbjct 141 CAAAGTGCAGGCATGTGATCTGC-TCGAAGGGGAATGGGGCATCGTAGGCAGTATTGTCA 199
Query 206 ATTGGAACTACGTTCATG-AGGGACAAGCAAAGGTTGCAAAAGAGAGGATTGAATTAGTA 264
| |||||||||||| ||| |||| | |||||||| ||||||||||| || ||||||||
Sbjct 200 ACTGGAACTACGTTTATGCGGGGA-AGGCAAAGGTGGCAAAAGAGAGAATCGAATTAGTG 258
Query 265 GAGCCAGAGAAGAAACTGATCAAGTTTAGGGTCATTGAAGGAGATGTTATGGCTGAGTAC 324
|| |||||||||||||| || |||||||||||||| |||||||||||| |||| | |||
Sbjct 259 GAACCAGAGAAGAAACTAATAAAGTTTAGGGTCATAGAAGGAGATGTTTTGGCCGTTTAC 318
Query 325 AAGAGTTTCTTGATCACGATTCAGGTGACCCCGAAGGAAGGAG-GGACTGGAAGTGTTGT 383
||||| |||||||||||||||| |||||||||||||||||||| || ||||||||| ||
Sbjct 319 AAGAGCTTCTTGATCACGATTCGGGTGACCCCGAAGGAAGGAGAGG-TTGGAAGTGTGGT 377
Query 384 GAAATGGCA-CATTGAGTATGAGAAGATTGATGAGAACGTGCCTCACCCTGAGAATCTTC 442
||||||||| | ||||||| ||||| | ||||||||| |||||||||||| | ||| |||
Sbjct 378 GAAATGGCATC-TTGAGTACGAGAAAAATGATGAGAATGTGCCTCACCCTTATAATTTTC 436
Query 443 TCCCTTTCTTCGCCGAGATGACCAAAGAGATTGACGAACACCTCTTATCCGAGGAAT 499
| |||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 437 TTCCTTTCTTAGCTGAGATGACCAAAGAGATTGACGAACACCTCTTATCTGAGGAAT 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18200215953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5