BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28020.1
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489625 jgi|Araly1|489625|fgenesh2_kg.6__2759__AT5G28020.4 1539 0.0
Ahg489636 jgi|Araly1|489636|fgenesh2_kg.6__2770__AT5G28020.3 1149 0.0
Ahg949380 jgi|Araly1|949380|scaffold_801267.1 1118 0.0
> Ahg489625 jgi|Araly1|489625|fgenesh2_kg.6__2759__AT5G28020.4
Length=1014
Score = 1539 bits (833), Expect = 0.0
Identities = 938/990 (95%), Gaps = 2/990 (0%)
Strand=Plus/Plus
Query 345 AGTTTCAGAAAACAGACCAACATGGAAGATCGGTGCTTGATCAAGAACGATATCACTGAA 404
|||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 1 AGTTTCAGAAAACAGAACAACATGGAAGATCGGTGCTCGATAAAGAACGATGTCACTGAA 60
Query 405 TTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGT 120
Query 465 ATCGCTGCGAAGCTTGAGATGATGGAGCCTTGT-TCTAGCGTCAAAGACAGAATCGCGTA 523
|||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 121 ATCGCTGCAAAGCTTGAGATGATGGAGCCTT-TCTCTAGTGTCAAAGACAGAATCGCGTA 179
Query 524 TAGTATGATCAAAGATGCAGAAGACAAAGGATTGATTACTCCCGGAAAGAGTACATTGAT 583
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 180 TAGTATGATCAAAGATGCAGAGGAGAAAGGATTGATTACTCCCGGAAAGAGTACATTGAT 239
Query 584 AGAGCCAACTGCTGGTAACACCGGGATTGGTTTAGCTTGCATGGGAGCTGCAAGAGGCTA 643
|||||||| |||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 240 TGAGCCAACGGCTGGTAACACCGGGATTGGTTTAGCCTGTGTCGGAGCTGCAAGAGGCTA 299
Query 644 TAAAGTGATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAGGGC 703
||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||
Sbjct 300 TAAAGTGATCCTTGTGATGCCTTCAACTATGAGTTTAGAGAGAAGAATCATCCTTAAGGC 359
Query 704 ACTAGGTGCAGAGCTTCATCTCTCGGACCAGCGCATAGGCCTTAAAGGAATGTTGGAGAA 763
| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 360 ATTAGGTGCAGAGCTTCATCTCTCAGAACAGCGGATAGGCCTTAAAGGAATGTTGGAGAA 419
Query 764 AACTGAAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGAAAATCC 823
||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 420 AACCGAAGCGATATTAAGCAAAACTCCTGGTGGTTACATTCCACAGCAGTTTGAAAATCC 479
Query 824 TGCAAACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTCAGCCGG 883
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 480 TGCAAACCCCGAGATTCATTACCAAACCACGGGACCGGAAATATGGAGAGATTCAGCTGG 539
Query 884 GAAAGTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGTAGGGAA 943
|||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 540 GAAAGTTGATATATTGGTTGCTGGTGTAGGGACTGGTGGAACAGCTACTGGAGTAGGGAA 599
Query 944 GTTCCTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGAAAGTCC 1003
||||||||||||| |||| ||||| || |||||||||||||||||||||| |||||||||
Sbjct 600 GTTCCTCAAGGAGAAGAATAAAGATATTAAGGTTTGTGTGGTGGAACCAGAAGAAAGTCC 659
Query 1004 GGTACTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGGTATCGT 1063
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 GGTACTGAGCGGAGGTCAACCAGGTCCACATTTGATCCAGGGAATTGGCTCTGGTATCGT 719
Query 1064 CCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTGAAGAGGC 1123
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 720 CCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTAAAGTGACAGGTGAAGAAGC 779
Query 1124 TATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATATCCTCTGG 1183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 TATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTATTGGTGGGAATATCCTCTGG 839
Query 1184 AGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGAAACTCAT 1243
|||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 840 AGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACACAGGAAAACTCAT 899
Query 1244 TGTGGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGAT 1303
|| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 900 TGCGGTGGTTTTTCCCAGTGGGGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGGT 959
Query 1304 TAGATATGAAGCAGAGAATTTGCCTATTGA 1333
||||||||||||||||||||||||||||||
Sbjct 960 TAGATATGAAGCAGAGAATTTGCCTATTGA 989
> Ahg489636 jgi|Araly1|489636|fgenesh2_kg.6__2770__AT5G28020.3
Length=985
Score = 1149 bits (622), Expect = 0.0
Identities = 865/982 (88%), Gaps = 17/982 (2%)
Strand=Plus/Plus
Query 356 ACAGACCAACATGGAAGATC-G--GTGC-TTGATCAAGAACGATATCACTGAATTGATTG 411
|||||| ||||||||||| | | | | ||||||||||||||| |||||||||||||||
Sbjct 1 ACAGACAAACATGGAAGA-CAGAATTTCTTTGATCAAGAACGATGTCACTGAATTGATTG 59
Query 412 GTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCGTATCGCTG 471
|||||||||||||||||||||| || || |||| |||| ||||||||| ||||| ||||
Sbjct 60 GTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCGTATTGCTG 119
Query 472 CGAAGCTTGAGATGATGGAGCCTTGTTCTAGCGTCAAAGACAGAATCGCGTATAGTATGA 531
| ||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||
Sbjct 120 CCAAGCTTGAGATGATGGAGCCTTGCTCTAGCATCAAAGACAGAATTGCATATAGTATGA 179
Query 532 TCAAAGATGCAGAAGACAAAGGATTGATTACTCCCGGAAAGAGTACATTGATAGAGCCAA 591
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 180 TCAAAGATGCAGAAGAAAAAGGATTGATTACTCCCGGAAAGAGTACATTGATTGAGGCGA 239
Query 592 CTGCTGGTAACACCGGGATTGGTTTAGCTTGCAT-GGGAGCTGCAAGAGGCTATAAAGTG 650
| | |||||| ||||||||||||||||| |||| ||| ||| ||||||| |||||||||
Sbjct 240 CGGGTGGTAATACCGGGATTGGTTTAGCCAGCATCGGG-GCTTCAAGAGGTTATAAAGTG 298
Query 651 ATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAGGGCACTAGGT 710
|||||| |||||||| |||| |||||||||||||| |||||||||||||| ||| |||||
Sbjct 299 ATCCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATCATTCTGAGAGCATTAGGT 358
Query 711 GCAGAGCTTCATCTCTCGGACCA-GCGCATAGGCCTTAAAGGA-ATGTTGGAGAAAACTG 768
|||||| |||||||| | || || | | ||||| |||||||| | |||||||||| ||
Sbjct 359 GCAGAGGTTCATCTCACTGA-CATGAGTATAGGTATTAAAGGACA-GTTGGAGAAAGCTA 416
Query 769 AAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGA-AAATCCTGCA 827
||| ||| |||||||||||||||||||||||||| ||||| || ||| | |||||||| |
Sbjct 417 AAGAGATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTT-ATAAATCCTGAA 475
Query 828 AACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTCAGCCGGGAAA 887
|||||||||||||||||| |||||||||| ||||| || |||||||||||||| ||||||
Sbjct 476 AACCCCGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTCAGCAGGGAAA 535
Query 888 GTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGTAGGGAAGTTC 947
|||||||| |||||||| || || || ||||||||||| | ||||||| ||||||||||
Sbjct 536 GTAGATATCTTGGTCGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAACAGGGAAGTTC 595
Query 948 CTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGAAAGTCCGGTA 1007
|| || || ||||||||||||| |||||||||||||||||||| | |||||| |||||
Sbjct 596 CTTAAAGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGAAAGTGCGGTA 655
Query 1008 CTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGGT-ATCGTCCC 1066
|| |||||||| ||||||||||||||||||| || ||||||||||||||| | | ||
Sbjct 656 CTCAGCGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGGTGA-AATTCC 714
Query 1067 ATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTGAAGAGGCTAT 1126
| |||||||||||||| ||||||||||||||| ||||||||| ||||||| || |||||
Sbjct 715 AACCAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACAGGTGAGGAAGCTAT 774
Query 1127 TGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATATCCTCTGGAGC 1186
||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 775 TGAAACAGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATATCCTCTGGAGC 834
Query 1187 CGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGAAACTCATTGT 1246
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 835 CTCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGAAACTCATTGT 894
Query 1247 GGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCGATTCGATT-A 1305
||| ||||||| ||||||||||||||||||||||||||| || ||||||| || | | |
Sbjct 895 GGTTATTTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCGAGTC-AGTCA 953
Query 1306 GATATGAAGCAGAGAATTTGCC 1327
|||||||||| |||||||||||
Sbjct 954 GATATGAAGCTGAGAATTTGCC 975
> Ahg949380 jgi|Araly1|949380|scaffold_801267.1
Length=1016
Score = 1118 bits (605), Expect = 0.0
Identities = 876/1005 (87%), Gaps = 25/1005 (2%)
Strand=Plus/Plus
Query 348 TTCAGAAAACAGACCAACATGGAAGATC-G--GTGC-TTGATCAAGAACGATATCACTGA 403
|||| || |||||||||||||||||| | | | | ||||||||||||||| |||||||
Sbjct 5 TTCA-AAGACAGACCAACATGGAAGA-CAGAATTTCTTTGATCAAGAACGATGTCACTGA 62
Query 404 ATTGATTGGTAACACACCAATGGTGTATCTGAACAATGTTGTTGATGGTTGCGTGGCTCG 463
|||||||||||||||||||||||||||||| || || |||| |||| ||||||||| |
Sbjct 63 ATTGATTGGTAACACACCAATGGTGTATCTAAATAAAATTGTGGATGATTGCGTGGCCCA 122
Query 464 TATCGCTGCGAAGCTTGAGATGATGGAGCCTTGTTCTAGCGTCAAAGACAGAATCGCGTA 523
||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 123 TATTGCTGCCAAGCTTGAGATGATGGAGCCTTGTTCTAGCATCAAAGACAGAATCGCGTA 182
Query 524 TAGTATGATCAAAGATGCAGAAGACAAAGGATTGATTACTCCC-GGAAAGAGTACATTGA 582
|||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||
Sbjct 183 TAGTATGATCAAAGATGCAGAAGAAAAAGGATTGATCAC-CCCTGGAAAGAGTACATTGA 241
Query 583 TAGAG-CCAACTGCTGGTAACACCGGGATTGGTTTAGCTTGCAT-GGGAGCTGCAAGAGG 640
| ||| ||| | | |||||| ||||| ||||||||||| |||| ||| ||| |||||||
Sbjct 242 TTGAGGCCA-CGGGTGGTAATACCGGAATTGGTTTAGCCAGCATCGGG-GCTTCAAGAGG 299
Query 641 CTATAAAGTGATCCTTGTGATGCCTTCAACTATGAGCTTAGAGAGAAGAATCATTCTGAG 700
||||||||||| ||| |||||||| |||| |||||||||||||| ||||| ||||||||
Sbjct 300 TTATAAAGTGATTCTTTTGATGCCTGCAACGATGAGCTTAGAGAGGAGAATAATTCTGAG 359
Query 701 GGCACTAGGTGCAGAGCTTCATCTCTCGGACCA-GCGCATAGGCCTTAAAGGA-ATGTTG 758
||| ||||||||||| || ||||| | || | | |||||||| |||||||| | |||
Sbjct 360 AGCATTAGGTGCAGAGGTTTATCTCACAGAT-ATGAGCATAGGCATTAAAGGACAA-TTG 417
Query 759 GAGAAAACTGAAGCGATTTTAAGCAAAACTCCTGGTGGTTACATTCCACAACAATTTGA- 817
|||||| || ||| ||| |||||||||||||||||||||||||| ||||| || ||| |
Sbjct 418 GAGAAAGCTAAAGAGATATTAAGCAAAACTCCTGGTGGTTACATACCACACCAGTTT-AT 476
Query 818 AAATCCTGCAAACCCCGAGATTCATTACCGAACCACGGGACCGGAAATATGGAGAGATTC 877
|||||||| ||||||||||||||||||| |||||||||| ||||| || |||||||||||
Sbjct 477 AAATCCTGAAAACCCCGAGATTCATTACAGAACCACGGGTCCGGAGATTTGGAGAGATTC 536
Query 878 AGCCGGGAAAGTAGATATATTGGTCGCTGGCGTAGGGACTGGTGGAACTGCTACTGGAGT 937
|| |||||||||||||| ||||| || || || || ||||||||||| | |||||||
Sbjct 537 TGCAGGGAAAGTAGATATCTTGGTGGCCGGTGTTGGAACTGGTGGAACGGTTACTGGAAC 596
Query 938 AGGGAAGTTCCTCAAGGAGCAGAACAAAGACATCAAGGTTTGTGTGGTGGAACCAGTAGA 997
|||||||||||| || || ||||||||||||| |||||||||||||||||||| | ||
Sbjct 597 AGGGAAGTTCCTTAAAGAAAAGAACAAAGACATTAAGGTTTGTGTGGTGGAACCTGCCGA 656
Query 998 AAGTCCGGTACTTAGCGGAGGTCAACCAGGTCCACATTTGATTCAGGGAATTGGCTCTGG 1057
|||| ||||||| |||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 657 AAGTGCGGTACTCAGCGGAGGAGAACCAGGTCCACATTTGATCCAAGGAATTGGCTCTGG 716
Query 1058 T-ATCGTCCCATTCAATTTGGACTTAACCATTGTTGATGAAATTATTCAAGTGGCAGGTG 1116
| | ||| | |||||||||||||| ||||||||||||||| ||||||||| | ||||
Sbjct 717 TGAAATTCCAAC-CAATTTGGACTTAAGCATTGTTGATGAAATCATTCAAGTGACTGGTG 775
Query 1117 AAGAGGCTATTGAAACAGCCAAGCTTCTTGCCCTCAAAGAAGGATTACTGGTGGGAATAT 1176
| || |||||||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 776 AGGAAGCTATTGAAACAGCCAAGCTTCTTGCTCTCAAAGAAGGATTATTGGTTGGAATAT 835
Query 1177 CCTCTGGAGCCGCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCGGGGA 1236
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 836 CCTCTGGAGCCTCAGCAGCGGCTGCGTTAAAGGTTGCAAAGCGGCCAGAAAACGCAGGGA 895
Query 1237 AACTCATTGTGGTGGTTTTTCCTAGTGGAGGAGAACGTTATTTATCGACTAAACTGTTCG 1296
||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||||
Sbjct 896 AACTCATTGTGGTTATTTTTCCCAGTGGAGGAGAACGTTATTTATCGACTGAATTGTTCG 955
Query 1297 ATTCGATT-AGATATGAAGCAGAGAATTTGCCTA-TTGAATGAAT 1339
| || | | ||||||||||| ||||||||||| | |||||| |||
Sbjct 956 AGTC-AGTCAGATATGAAGCTGAGAATTTGCC-AGTTGAAT-AAT 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5