BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28040.1
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489637 jgi|Araly1|489637|fgenesh2_kg.6__2771__AT5G28040.1 2106 0.0
> Ahg489637 jgi|Araly1|489637|fgenesh2_kg.6__2771__AT5G28040.1
Length=1661
Score = 2106 bits (1140), Expect = 0.0
Identities = 1513/1683 (90%), Gaps = 65/1683 (4%)
Strand=Plus/Plus
Query 1 AATTCCTTCTTTCTGGATCTGATTCGATC--TACCAGAAAAATTTCTCTCTCGCTACGTT 58
|||||||||||| |||||||||||||||| | | | |||||| ||||||||||| ||||
Sbjct 1 AATTCCTTCTTTGTGGATCTGATTCGATCAATTCGA-AAAAATATCTCTCTCGCTGCGTT 59
Query 59 TTTCTCATGGCATCGGATCAACGTGACACTGATTTCTCCGCTGAATCACCAGATCTAGAA 118
| | |||||||||| ||||||||||||||||||||||||| ||| ||||| | |||||||
Sbjct 60 TCT-TCATGGCATCTGATCAACGTGACACTGATTTCTCCGTTGATTCACCGGGTCTAGAA 118
Query 119 GAAGACGGCGGCGGTGGCGGTGGCGGAAGAGGAGGAGGAGAAACTGAATCCGACGAAGAT 178
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 GAAGACGGCGGCGGTGGCGGTGGC---CGAGGAGGAGGAGAAACTGAATCCGACGAAGAT 175
Query 179 GTTGTTATACCCGAACCAAACGAAGCCGAAGACGACGATCACGATCCCGATCCCGATCCA 238
||||||||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 176 GTTGTTATACCTGAACCAAACGAACCCGAAGACGACGATCACGATCACGATCCTGATCCA 235
Query 239 GAATACGAAGATCTGAATTCTCCGTC-A--A-T---G--ATTTCCAGAGCTCCGGCGACG 289
|||||||||||||||||||||||||| | | | | ||||||| |||||||| | ||
Sbjct 236 GAATACGAAGATCTGAATTCTCCGTCAATGATTACCGCAATTTCCACAGCTCCGGTGGCG 295
Query 290 AAATCATCCTCAGGAACCGTAACCGTCGCTCTTCCCGCTGGATCCGCCGTACCTGTAGCT 349
|||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 296 AAATCAACCTCCGGAACCGTAACCGTCGCTCTTCCCGCCGGATCCGCCGTACCTGTATCT 355
Query 350 TCAATTCCATCAGATTCCGATCAGAAATGGCACCGTATGACTGAAATCGTTCATCAGAGA 409
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 356 TCAATTCCATCAGATTCCGATCAGAAATGGCACCGTATGACCGAAATCGTTCATCAGAGA 415
Query 410 CCACCGATTGATGATTCACGACGTTTATTCCAGAGACTATGGACTGACGAAGACGAGATC 469
|||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 416 CCACCGATTGATGACTCTCGACGTTTATTCCAGAGACTATGGACTGATGAAGATGAGATC 475
Query 470 GAGCTTCTCCGTGGCTTTCTCGATTACATCACAAACCACCGTGGTAACAGCTCTCATCCG 529
|||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 476 GAGCTTCTCCGTGGATTTCTCGATTACATCACGAGCCACCGTGGTAACAGCTCTCATCCG 535
Query 530 CCTGATACGGCGCCGTTTTATGAACAGATTAAATCTAAGCTACAGTTAGAGTTTAATAAG 589
|| ||||||||||||||||| || ||||| ||||| || || || || || |||||||||
Sbjct 536 CCGGATACGGCGCCGTTTTACGAGCAGATCAAATCGAAACTTCAATTGGATTTTAATAAG 595
Query 590 AATCAGCTTGTGGAGAAGCTAAGGAGGTTGAAGAAGAAGTATAGGAATGTTATGAGTAAG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AATCAGCTTGTGGAGAAGCTAAGGAGGTTGAAGAAGAAGTATAGGAATGTTATGAGTAAG 655
Query 650 TTTAGTTCTGGTAAAGAAGTGTTCTTTAAAAGTCCTCATGATCAAGCTACTTTTGATATC 709
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTTAGTTCTGGTAAAGAGGTATTCTTTAAAAGTCCTCATGATCAAGCTACTTTTGATATC 715
Query 710 TCTAGGAAGATTTGGAATCAAACTGGGAAAATTATTGGTTTTGAAGATAATAATGTGATG 769
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 716 TCTAGGAAGATTTGGAATCAAACTGGGAAAATTATTGGGTTTGAGGATAATAATGTGATG 775
Query 770 GATTTAGAAGAAACTAATCATGTAAATAACGCGAATGGTAGCTCGGGTTTTAATGTCTCT 829
||||| |||||||| ||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 776 GATTTCGAAGAAACCAATCATGTAAATAACACGAATGGTAGCTCGAGTTTCAATGTCTC- 834
Query 830 GTTATCGGTAATGCGAATGTCGATGTTGATTCGGAGAATGGTTTAGAGAAGAAAGTGACG 889
| | | | | | ||||| ||||||||||| || || ||||| ||||||||||||||
Sbjct 835 GAT-T-G-T---G--AATGTGGATGTTGATTCTGAAAACGGTTTGGAGAAGAAAGTGACT 886
Query 890 ATAAGTAGAAAACGATCACGGTCTAGGATCGGGAAGATCGACGAGGATAAGCCTGTTCTT 949
|| ||||||||||||||||| || |||||||||||||| || || |||||||||||| ||
Sbjct 887 ATTAGTAGAAAACGATCACGATCGAGGATCGGGAAGATTGATGAAGATAAGCCTGTTATT 946
Query 950 GCTCCGTGTGACGGGGTGATACCGAATGCGGTTAATCTTAACGAGAATGTGGCTGTTGGT 1009
||||| ||||||||| | || |||||| | ||||||||||| |||||||||||||||| |
Sbjct 947 GCTCCCTGTGACGGGCTAATGCCGAATACTGTTAATCTTAATGAGAATGTGGCTGTTGCT 1006
Query 1010 TGTGATTTTGGTGATGGGAGGAATCTT-GGAGTGTTGATTGAAGAGACGGTTAAGAATTG 1068
|||||||| |||||||||||||| || |||| |||||| ||||||||||| ||||||||
Sbjct 1007 GGTGATTTTAGTGATGGGAGGAAT-TTAGGAGGGTTGATAGAAGAGACGGTGAAGAATTG 1065
Query 1069 TGTATCGCCCATGATTAAGGAGATGATGAATAGTACGACGGGTATGATGATGGCTGCAAC 1128
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1066 TGTATCGCCTATGATTAAGGAGATGATGAATGGTACGACGGGTATGATGATGGCTGCGAT 1125
Query 1129 GGGTGGGTTTCCTGGAGGTGGTGCTCATGCTCTCGGTGTGTTGAGTCCGATGCTAATGCC 1188
|||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1126 GGGTGGGTTTCCAGGAGGTGGTGCTCATGCTCTTGGTGTGTTGAGTCCGATGTTAATGCC 1185
Query 1189 GTCGATGAATTTAGGGTTTGGTGGTAAGGGAGTAGGGGACGAACGGTGGAGGAGACAACA 1248
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1186 GTCGATGAATTTAGGGTTTGGTGGTAAGGGAGCAGGGGACGAACGGTGGAGGAGACAGCA 1245
Query 1249 GATTCTTGAGCTGGAAGTGTATTCGAGGAGATTAGAATTGGTTCAAGAACAGATTAGAGC 1308
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1246 GATTCTTGAGTTGGAAGTGTATTCGAGGAGATTAGAATTGGTTCAAGAGCAGATTAGAGC 1305
Query 1309 CACGGTGAATGAGTTAAAGACAATGCCTAATGGAGGATGATGCATAAGGAAAGACTACAA 1368
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1306 CACAGTGAATGAGTTAAAGACAATGCCTAATGGAGGATGATGCATAAGTAA-GACTACAA 1364
Query 1369 TGGGTTCTT-T-A-A------GTTATGAGAAAATGATGAAGAAAGATTATGATGGTGAGG 1419
||||||||| | | | |||||||||||| || ||||||||| ||||||||||||
Sbjct 1365 TGGGTTCTTATGAGATCTTAAGTTATGAGAAAAAGACGAAGAAAGACCATGATGGTGAGG 1424
Query 1420 TATAGTATTAGCAAAAGTAATAATCTTAATGAAAATTTCTGATGGTGATGAAATCttttt 1479
|||||||||||||||||| || | ||| | |||||||||||||||||||| |
Sbjct 1425 TATAGTATTAGCAAAAGT--TA-T---AAT-----T--CTGATGGTGATGAAATCTTTCT 1471
Query 1480 tagggttttagtatttttttttcttgattgaatctttttttaattttGTCGATTAGGAGT 1539
||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 1472 -AGGTTTTTAGTATTTTT----CTTGATTGAATCTTTTT--AATTTTGTCGATTAGGGGT 1524
Query 1540 GAATAACCTTTGTTCTTAG-CTGAT-AAATTATAGTTTTTGGTAGAGTTCaaaaaaaaaa 1597
||||||||||||| |||| || || |||||||||||||||||||||||||| |||||||
Sbjct 1525 GAATAACCTTTGTA-TTAGTCT-ATTAAATTATAGTTTTTGGTAGAGTTCAATAAAAAAA 1582
Query 1598 -aaaaaCTCTTTTGTGCTATTTATAATGtttttt-tGTGTGATGCATATAATATGATATT 1655
||||||| | ||| ||||||| | | |||||| ||||||||||||||||||||||| |
Sbjct 1583 CAAAAACTATCTTGAGCTATTTGTT-T-TTTTTTGTGTGTGATGCATATAATATGATAAT 1640
Query 1656 ATA 1658
|||
Sbjct 1641 ATA 1643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65020048215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5