BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28050.2
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489639 jgi|Araly1|489639|fgenesh2_kg.6__2773__AT5G28050.1 1242 0.0
> Ahg489639 jgi|Araly1|489639|fgenesh2_kg.6__2773__AT5G28050.1
Length=1004
Score = 1242 bits (672), Expect = 0.0
Identities = 756/795 (95%), Gaps = 11/795 (1%)
Strand=Plus/Plus
Query 217 TGGAAGCAAAAGATGGTACCATCTCCGTAGCTTCTGCATTTTCCGGTCACCAACAAGCTG 276
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 212 TGGAAGCAAAAGACGGTACCATCTCCGTGGCTTCTGCATTTTCCGGTCACCAACAAGCTG 271
Query 277 TTCACGATAGCGACCATAAATTCCTAACGCAAGCTGTTGAAGAAGCTTACAAGGGAGTGG 336
| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 272 TGCACGACAGCGACCACAAATTCCTAACGCAAGCTGTTGAAGAAGCTTACAAGGGAGTTG 331
Query 337 ACTGTGGTGATGGTGGCCCATTTGGTGCGGTGATTGTGCATAATA-ACGAGGTTGTCGCT 395
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 332 ACTGTGGTGATGGTGGCCCATTTGGTGCGGTGATTGTGCATAA-AGATGAGGTTGTCGCT 390
Query 396 AGCTGCCACAATATGGTTTTGAAATATACTGACCCAACTGCACATGCTGAAGTCACTGCC 455
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 391 AGCTGCCACAATATGGTTTTGAAATATACAGACCCAACTGCCCATGCTGAAGTCACCGCC 450
Query 456 ATTAGAGAGGCATGTAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCA 515
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 451 ATTAGAGAGGCATGCAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTATGCA 510
Query 516 TCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGAGGTTG 575
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TCTTGTGAGCCGTGTCCCATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGAGGTTG 570
Query 576 GTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGATGACTTCATAGCTGAT 635
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 571 GTTTATGGAGCCAAAGCCGAAGCAGCCATAGCCATCGGGTTTGATGACTTCATCGCTGAT 630
Query 636 GCTTTGAGAGGCACGGGGGTTTACCAGAAATCTAGTCTGGAGATCAAGAAAGCAGACGGG 695
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GCTTTGAGAGGCACCGGGGTTTACCAGAAATCTAGTCTGGAGATCAAGAAAGCAGACGGG 690
Query 696 AATGGCGCTGCGATTGCGGAGCAAGTTTTCCAGAACACAAAGGAGAAGTTCCGTTTATAC 755
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 AATGGTGCCGCTATTGCGGAGCAAGTTTTCCAGAACACAAAGGAGAAGTTCCGTTTATAC 750
Query 756 TAAAGCA-CTTCTCCATTACCACATTCTTCTTCTTCTTCT-C-C-TTCATGATGGTAATT 811
||||| | |||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 751 TAAAG-ATCTTCTCCATTACCACATTCTTCTTCTTCTTCTTCTCCTTCATGATGGTAATT 809
Query 812 AGAAGTAGTAGAAGAAGAACTGCACTTGCTTTAACTTAAATAAATCTCTGTTTCAAATTG 871
||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 810 AGAAGTAGTAGAAGAAGAAATGCACTTGCTTTAACTAAAATAAATCTTTGTTTCAAATTA 869
Query 872 TTCATTTTAAAAACAGAAGGAAACGaaaaaaa-aaa---TCAATTTCGGTTCTTGTTGAC 927
||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct 870 TTCATTTTAAAAACAGAAGGAAAAGAAAAAAAGAAAAACTCAATTTCGGTTCTTGTTGAC 929
Query 928 ACGATTTGTAATTTCTTTTCTTCATTTGAATTGAACTGGTAAATACTTTCTTCTCTGTCA 987
| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 930 ATGCTTTGTAATTTCTTTTCTTCATTTGAATTGAACTGGTAAATACTTTCTTTTCTGTCA 989
Query 988 AAATCTTTATTTTCT 1002
|||||||||||||||
Sbjct 990 AAATCTTTATTTTCT 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5