BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28060.1
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942428 jgi|Araly1|942428|scaffold_602972.1 713 0.0
Ahg477767 jgi|Araly1|477767|fgenesh2_kg.3__468__AT3G04920.1 518 3e-146
> Ahg942428 jgi|Araly1|942428|scaffold_602972.1
Length=442
Score = 713 bits (386), Expect = 0.0
Identities = 423/441 (96%), Gaps = 2/441 (0%)
Strand=Plus/Plus
Query 86 TCTCGGAAAGTAAATCGCAGCCATGGCGGAAAAAGCTGTCACTATCAGGACCAGAAACTT 145
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 TCTCGG--AGTAAATCGCAGCCATGGCGGAAAAAGCTGTCACAATCAGGACCAGAAACTT 58
Query 146 CATGACCAACAGGCTTCTCGCCAGAAAGCAATTCGTTATTGATGTTCTTCATCCTGGAAG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CATGACCAACAGGCTTCTCGCCAGAAAGCAATTCGTTATTGATGTTCTTCATCCTGGAAG 118
Query 206 AGCCAATGTTTCAAAGGCTGAGCTTAAGGAGAAATTGGCGAGGATGTATGAGGTTAAGGA 265
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 119 AGCCAATGTTTCAAAGGCTGAGCTTAAGGAGAAGTTGGCGAGGATGTACGAGGTTAAGGA 178
Query 266 CCCAAATGCTATCTTCTGTTTCAAGTTCAGAACTCACTTTGGAGGTGGTAAATCTTCTGG 325
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 179 TCCGAATGCTATCTTCTGTTTCAAATTCAGAACTCACTTTGGAGGTGGTAAATCTTCTGG 238
Query 326 ATATGGTTTGATCTATGATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACT 385
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 239 ATATGGTTTGATCTATGATTCTGTTGAGAACGCTAAGAAGTTCGAGCCTAAGTACAGACT 298
Query 386 TATCAGGAATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAA 445
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 299 GATCAGGAACGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATTAAGGAGAGGAA 358
Query 446 GAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGACCAAGGCTGGTGATACCAAGAAGAA 505
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 GAACAGGGCGAAGAAAATCCGTGGTGTTAAGAAGACCAAGGCTGGTGACCCCAAGAAGAA 418
Query 506 GTAAGACGTTTGAAGAGGACA 526
|||||| ||||||||||||||
Sbjct 419 GTAAGATGTTTGAAGAGGACA 439
> Ahg477767 jgi|Araly1|477767|fgenesh2_kg.3__468__AT3G04920.1
Length=716
Score = 518 bits (280), Expect = 3e-146
Identities = 372/417 (89%), Gaps = 4/417 (1%)
Strand=Plus/Plus
Query 97 AAATCGCAGCCATGGCGGAAAAAGCTGTCACTATCAGGACCA-GAAACTTCATGACCAAC 155
|||||||| ||||| ||||| || ||||| ||| | |||| |||| ||||||||||||
Sbjct 76 AAATCGCAAAAATGGCTGAAAAGGCAGTCACCATCCGAACCAGGAAA-TTCATGACCAAC 134
Query 156 AGGCTTCTCGCCAGAAAGCAATTCGTTATTGATGTTCTTCATCCTGGAAGAGCCAATGTT 215
|| |||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 135 AGACTTCTCTCCAGGAAGCAGTTCGTTATTGATGTTCTTCACCCTGGAAGAGCCAATGTT 194
Query 216 TCAAAGGCTGAGCTTAAGGAGAAATTGGCGAGGATGTATGAGGTTAAGGACCCAAATGCT 275
|||||||||||||| |||||||| | || |||||||| ||||| |||||||||||||||
Sbjct 195 TCAAAGGCTGAGCTGAAGGAGAAGCTAGCAAGGATGTACGAGGTCAAGGACCCAAATGCT 254
Query 276 ATCTTCTGTTT-CAAGTTCAGAACTCACTTTGGAGGTGGTAAATCTTCTGGATATGGTTT 334
||||| ||||| ||| |||||||| |||||||||||||||||||| || || | ||||||
Sbjct 255 ATCTT-TGTTTTCAAATTCAGAACCCACTTTGGAGGTGGTAAATCATCCGGGTTTGGTTT 313
Query 335 GATCTATGATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGAA 394
||||||||||||||| |||| ||| ||||||||||| || || |||||||||||||||||
Sbjct 314 GATCTATGATACTGTTGAGAGCGCCAAGAAGTTTGAACCCAAATACAGACTTATCAGGAA 373
Query 395 TGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGC 454
|||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 374 TGGACTTGACACTAAGATTGAGAAGTCAAGGAAACAAATCAAGGAAAGGAAGAACAGGGC 433
Query 455 GAAGAAGATCCGTGGTGTTAAGAAGACCAAGGCTGGTGATACCAAGAAGAAGTAAGA 511
|||||| |||||||||||||||||||| |||||||||||| |||||||||||| |||
Sbjct 434 GAAGAAAATCCGTGGTGTTAAGAAGACAAAGGCTGGTGATCCCAAGAAGAAGTGAGA 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27791606493
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5