BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28080.2
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489642 jgi|Araly1|489642|fgenesh2_kg.6__2776__AT5G28080.2 1519 0.0
Ahg317356 jgi|Araly1|317356|fgenesh1_pm.C_scaffold_3000372 846 0.0
Ahg334500 jgi|Araly1|334500|fgenesh1_pg.C_scaffold_1001065 52.8 8e-06
> Ahg489642 jgi|Araly1|489642|fgenesh2_kg.6__2776__AT5G28080.2
Length=1502
Score = 1519 bits (822), Expect = 0.0
Identities = 927/976 (95%), Gaps = 13/976 (1%)
Strand=Plus/Plus
Query 7 GTGTATGATGAACAATCTCAGCCATCTTGAATCAGATTACTCTGAGTATGTTGAAGTTGA 66
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGTATGATGAACAATATCAGCCATCTTGAATCAGATTACTCTGAGTATGTTGAAGTTGA 60
Query 67 TCCTACTGGAAGATATGGAAGATACAATGAAGTTCTGGGTAAAGGATCTTCAAAGACTGT 126
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCTACTGGAAGATATGGAAGGTACAATGAAGTTCTGGGTAAAGGATCTTCAAAGACTGT 120
Query 127 TTACAGAGGATTTGATGAGTATCAAGGTATAGAAGTAGCATGGAACCAAGTAAAGCTCTA 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTACAGAGGATTTGATGAGTATCAAGGTATAGAAGTAGCATGGAACCAAGTAAAGCTCTA 180
Query 187 CGATTTCTTGCAGAGTCCTCAAGAGCTAGAGAGGCTCTACTGTGAGATCCATCTCCTCAA 246
|||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 181 CGATTTCTTGCAGAGTCCTCAAGAACTGGAGAGGCTTTACTGTGAGATTCATCTCCTCAA 240
Query 247 AACCT-TAAAACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATC 305
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GA-CTCTAAAACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATC 299
Query 306 GAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAGTATAGGCTAA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAGTATAGGCTAA 359
Query 366 AACATAAGAGAGTGAACATAAGAGCGGTAAAGAATTGGTGTAGACAGATTTTAAGAGGAT 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 AACATAAGAGAGTGAACATAAGAGCGGTAAAGAATTGGTGTAGACAGATTTTAAGAGGCT 419
Query 426 TAAACTATCTTCATACACATGACCCTCCTGTGATTCATAGAGATCTCAAGTGTGACAACA 485
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 TAAACTATCTTCATACACATGACCCTCCTGTGATTCATAGAGATCTCAAATGTGACAACA 479
Query 486 TTTTTATAAATGGGAACCAAGGAGAAGTCAAGATTGGAGATCTTGGTCTTGCTGCTTGTT 545
||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 480 TTTTTATTAATGGGAACCAAGGAGAAGTCAAGATTGGTGATCTTGGTCTTGCCGCTTGTT 539
Query 546 TACAACACTCTCACGCTGCTCATTGTGTTGGCACACCAGAGTTCATGGCTCCTGAAGTTT 605
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 540 TACAACACTCTCACGCTGCTCATTGTGTCGGGACACCAGAGTTCATGGCTCCAGAAGTTT 599
Query 606 ATAAAGAAGAATATAACCAATTAGTCGATATTTACTCGTTCGGTATGTGTGTTTTGGAAA 665
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 ATAAAGAAGAATATAACCAATTAGTCGATATTTACTCGTTCGGGATGTGTGTTTTGGAAA 659
Query 666 TGGTAACGTTTGATTACCCGTATAGTGAGTGTTCTCACCCTGCTCAGATTTACAAGAGAG 725
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 660 TGGTAACATTTGATTACCCGTATAGCGAGTGTTCTCACCCTGCTCAAATTTACAAGAGAG 719
Query 726 TTATATCGG---GCAAGAAACCAGATGGATTAGACAAAGTGAAGGATCCAGAGGTTAGAG 782
||||||||| | ||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 720 TTATATCGGTAAGAAAGAAACCAGATGGACTAGACAAAGTGAAAGATCCAGATGTTAGAG 779
Query 783 GGTTTATCGAGAAGTGTTTGGCCACAGTGTCCCTTAGACTCTCTGCTTGTGAACTACTAG 842
| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 780 GCTTTATAGAGAAGTGTTTGGCCACTGTGTCACTTAGGCTCTCTGCTTGTGAACTACTAG 839
Query 843 ATGACCATTTTCTTTGTATCGATGAA--T----CGGATATGAGACGCGTAGAGAGCGAAA 896
| |||||||||||||||||||||||| | ||||||||| |||||||| |||| |||
Sbjct 840 ACGACCATTTTCTTTGTATCGATGAAGGTGAATCGGATATGAAACGCGTAGGGAGCCAAA 899
Query 897 AGGGCT-TGATAGATGAAGCAGGGACTCCTCTTAGACATTCTTATCATATACCTCACTAC 955
||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 900 -GGGATCTGATAGATGAAGCAGGGACTCTTCTTAGACATTCTTATCATATACCTCACTAC 958
Query 956 TCAAACGGTTACTACA 971
| ||||||||||||||
Sbjct 959 TTAAACGGTTACTACA 974
> Ahg317356 jgi|Araly1|317356|fgenesh1_pm.C_scaffold_3000372
Length=2103
Score = 846 bits (458), Expect = 0.0
Identities = 722/850 (85%), Gaps = 16/850 (2%)
Strand=Plus/Plus
Query 14 ATGAACAATCTCAGCCATCTTGAATCAGATTACTCTGAGTATGTTGAAGTTGATCCTACT 73
||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAACAATCTGAGTTATCTTGAACCAGATTACTCTGAGTTTGTTGAAGTTGATCCTACC 60
Query 74 GGAAGATATGGAAGATACAATGAAGTTCTGGGTAAAGGATCTTCAAAGACTGTTTACAGA 133
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 61 GGAAGATATGGAAGATACAATGAAGTTCTGGGTAAAGGAGCTTCAAAGACTGTTTATAGA 120
Query 134 GGATTTGATGAGTATCAAGGTATAGAAGTAGCATGGAACCAAGTAAAGCTCTACGATTTC 193
| ||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GCATTTGATGAATATGAAGGCATAGAAGTAGCATGGAACCAAGTGAAGCTCTACGATTTC 180
Query 194 TTGCAGAGTCCTCAAGAGCTAGAGAGGCTCTACTGTGAGATCCATCTCCTCAAAAC-CTT 252
|| || || ||| | || || |||||||| ||||||||||| ||||| ||||| || |||
Sbjct 181 TTACAAAGCCCTGAGGATCTTGAGAGGCTTTACTGTGAGATTCATCTTCTCAAGACTCTT 240
Query 253 AAAACACAA-AAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACA 311
||| || || || ||| ||||| |||||| | |||||||| ||||||| ||| | || |
Sbjct 241 AAA-CATAAGAA-CATTATGAAATTCTACACGTCTTGGGTTGATACCGCCAATAGGAATA 298
Query 312 TCAACTTT-GTCACTGAAATGTTCACTTCTGGCACCTTGAGACAGTATAGGCTAAAACAT 370
|||| ||| ||||||||| ||||||||||||||||||| ||||| ||||| || |||
Sbjct 299 TCAA-TTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAATATAGACTCGGGCAT 357
Query 371 AAGAGAGTGAACATAAGAGCGGTAAAGAATTGGTGTAGACAGATTTTAAGAGGATTAAAC 430
||||||||||||||||||||| | ||| |||||||||| || || || ||||| ||| |
Sbjct 358 AAGAGAGTGAACATAAGAGCGATGAAGCATTGGTGTAGGCAAATCTTGAGAGGCTTACAT 417
Query 431 TATCTTCATA-CACATGACCCTCCTGTGATTCATAGAGATCTCAAGTGTGACAACATTTT 489
|||||||||| | ||||| ||||||||||| || || |||||||| ||||||||||||||
Sbjct 418 TATCTTCATAGC-CATGATCCTCCTGTGATCCACAGGGATCTCAAATGTGACAACATTTT 476
Query 490 TATAAATGGGAACCAAGGAGAAGTCAAGATTGGAGATCTTGGTCTTGCTGCT-TGTTTAC 548
| || ||||| ||||||||||||||||||||||||||||| || ||||| | ||||
Sbjct 477 CGTTAACGGGAATCAAGGAGAAGTCAAGATTGGAGATCTTGGCCTCGCTGCCAT-TTTAA 535
Query 549 -AACACTCTCACGCTGCTCATTGTGTTGGCACACCAGAGTTCATGGCTCCTGAAGTTTAT 607
|| | || || |||||||| || ||||| || || ||||||||||| |||||||||||
Sbjct 536 GAA-AGTCCCATGCTGCTCACTGCGTTGGGACTCCTGAGTTCATGGCACCTGAAGTTTAC 594
Query 608 AAAGAAGAATATAACCAATTAGTCGATATTTACTCGTTCGGTATGTGTGTTTTGGAAATG 667
|||||| |||||| |||| || ||||| ||||||||||||||||| |||||||||||
Sbjct 595 GAAGAAGCGTATAACGAATTGGTTGATATATACTCGTTCGGTATGTGCATTTTGGAAATG 654
Query 668 GTAACGTTTGATTACCCGTATAGTGAGTGTTCTCACCCTGCTCAGATTTACAAGAGAGTT 727
|| ||||||||||||||||| ||||||||| |||||||||||||||| ||||| | ||||
Sbjct 655 GTTACGTTTGATTACCCGTACAGTGAGTGTACTCACCCTGCTCAGATCTACAAAAAAGTT 714
Query 728 ATATCGGGCAAGAAACCAGATGGATTAG-ACAAAGTGAAGGATCCAGAGGTTAGAGGGTT 786
|| |||||||||||||| |||| ||| | |||| ||||| || || ||||||| | | ||
Sbjct 715 ATGTCGGGCAAGAAACCGGATGCATT-GTACAAGGTGAAAGACCCCGAGGTTAAATG-TT 772
Query 787 T-ATCGAGAAGTGTTTGGCCACAGTGTCCCTTAGACTCTCTGCTTGTGAACTACTAGATG 845
| || ||||| || |||||||| || || |||||| |||||||| |||| |||||||||
Sbjct 773 TCATTGAGAAATGCTTGGCCACCGTATCGCTTAGAGTCTCTGCTCGTGAGTTACTAGATG 832
Query 846 ACCATTTTCT 855
||| ||||||
Sbjct 833 ACCCTTTTCT 842
> Ahg334500 jgi|Araly1|334500|fgenesh1_pg.C_scaffold_1001065
Length=669
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1055 GATGATGATGAAGAAGAAGAAGATAAGA 1082
||||||||||||||||||||||||||||
Sbjct 100 GATGATGATGAAGAAGAAGAAGATAAGA 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5