BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28150.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489643 jgi|Araly1|489643|fgenesh2_kg.6__2777__AT5G28150.1 2119 0.0
Ahg477757 jgi|Araly1|477757|fgenesh2_kg.3__458__AT3G04860.1 60.2 4e-08
> Ahg489643 jgi|Araly1|489643|fgenesh2_kg.6__2777__AT5G28150.1
Length=1429
Score = 2119 bits (1147), Expect = 0.0
Identities = 1353/1449 (93%), Gaps = 27/1449 (2%)
Strand=Plus/Plus
Query 12 TTTAAATTTGGTAATAATTCTGAGAGTGAAAGGAGTCTCCTTTTTGTCTCTTTCTGTCTC 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTAAATTTGGTAATAATTCTGAGAGTGAAAGGAGTCTCCTTTTTGTCTCTTTCTGTCTC 60
Query 72 CGTTTTGAGTTTTTATCAGAAGACCAAAACACACATTTTACTTTACCGATTTGCTCTCTC 131
|||||||||||||||| | || | |||||||||||| |||||||| ||||||
Sbjct 61 CGTTTTGAGTTTTTAT--------C--AA-A-ACATTTTACTTTGCCGATTTGATCTCTC 108
Query 132 AAATCTCAAATCTCATTCCTTGATTTCTCTTGGAGACAACGGATCCAAAACCGACGACAC 191
||| ||||||| ||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 109 TTCTCTTAAATCTCTTTCCTTGATTTTTCTTGGAGACAACGGATCTAAAATCGACGACAC 168
Query 192 TCTC-AAACCAAATCCATGGAGATTTTCCAGATTCCGATTCAGTTTCTCCTTCTCTAATC 250
|||| |||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 169 TCTCAAAACTAAATCCATGGAGATTTTTCAGATTCCGATTCAGTTTCTCCTTCTTTAA-C 227
Query 251 -AATCTCATAAGATTCGCCCACCAAGTGTTTGTTGAAATTCCTGAGAGAGAGATGAAGGA 309
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 228 AAATCTCATCAGATTCGCCCACCAAGTGTTTGTTGAAATTCCCGAGAGAGAGATGAAGGA 287
Query 310 TTTTCCTTCTTGCTTTGGTGAAAATGGAGTTCAAGTTGCGGATTCATCGTCTTCTTCGAA 369
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||
Sbjct 288 TTTTCCTTCTTGCTTTGGTGAAAATGGTGTTCAAGTAGCGGATTCATCGTCTTC--C-AA 344
Query 370 CTCCGGTAAAAACGCTCAGAATTTGGTTACTTGTATCTACCAATGTCGAATTCGCGGAAG 429
||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 345 CTCTGGGAAAAATGCTCAGAATTTGGTTACTTGTATCTACCAGTGTCGAATTCGTGGAAG 404
Query 430 AAATTGTTTGATCACTGTGACATGGACTAAGAATCTGATGGGTCAAAGTGTAACAGTTGG 489
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 405 AAATTGTTTGATCACTGTGACATGGACTAAGAATTTGATGGGTCAAAGTGTAACCGTTGG 464
Query 490 TGTTGATGATTCTTGTAACCAAAGTCTT-TGTAAAGTCGAGATTAAGCCGTGGCTGTTTA 548
||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |
Sbjct 465 TGTTGATGATTCTTGTAACCAAAGT-TTGTGTAAAGTCGAGATTAAGCCGTGGTTGTTCA 523
Query 549 CTAAACGGAAAGGGTCTAAGAGTTTAGAGGCGTATTCGTGTAATATCGATGTTTTTTGGG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CTAAACGGAAAGGGTCTAAGAGTTTAGAGGCGTATTCGTGTAATATCGATGTTTTTTGGG 583
Query 609 ATCTTTCGTCTGCGAAATTCGGATCAGGTCCTGAAGCTTTGGGAGGATTCTATGTTGGTG 668
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATCTTTCGTCTGCGAAATTTGGATCAGGTCCTGAAGCTTTGGGAGGATTCTATGTTGGTG 643
Query 669 TTGTTGTTGACAAAGAAATGGTTTTGCTTCTTGGTGATATGAAGAAAGAAGCTTTTAAGA 728
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TTGTTGTAGACAAAGAAATGGTTTTGCTTCTTGGTGATATGAAGAAAGAAGCTTTTAAGA 703
Query 729 AGACGAATGCTTCGCCTTCGTCTTTAGGTGCTGTGTTCATTGCTAAGAAAGAGCATGTTT 788
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 704 AGACGAATGCTTCGCCTTCGTCTTTAGGTGCTGTGTTTATTGCTAAGAAAGAGCATGTTT 763
Query 789 TTGGTAAGAGAGTGTTTGCAACGAAAGCTCAGCTTTTTGCTGATGGGAAATTTCATGATC 848
|||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 764 TTGGTAAGAGAGTGTTTGCAACGAAAGCTCAGCTTTGTGCGGATGGGAAAATTCATGATC 823
Query 849 TGTTGATTGAGTGTGACACGAATGTCACCGATCCTTGTCTCGTTGTTCGTGTGGATGGTA 908
| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |
Sbjct 824 TATTGATTGAGTGTGACACGAGTGTCACTGATCCTTGTCTTGTTGTTCGTGTGGATGGGA 883
Query 909 AGACGTTGTTGCAGGTGAAGCGGCTTAAGTGGAAGTTTCGTGGCAACGATACGATAGTTG 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 884 AGACGTTGTTGCAGGTGAAGCGGCTTAAGTGGAAGTTTCGTGGCAACGATACGATAATTG 943
Query 969 TTAATAAAATGACTGTGGAAGTTCTATGGGATGTTCATAGTTGGCTCTTTGGGTTGCCTA 1028
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TTAATAGAATGGCTGTGGAAGTTCTATGGGATGTTCATAGTTGGCTCTTTGGGTTGCCTC 1003
Query 1029 CAACGGGAAACGCTGTGTTCATGTTCAGGACTTGTCAATCTACTGAGAAGAGCTTGTCTT 1088
|| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CAGCGGGTAACGCCGTGTTCATGTTCAGGACTTGTCAATCTACTGAGAAGAGCTTGTCTT 1063
Query 1089 TCTCACAGGACGTGACAACAACAAACTCCAAGTCTCATAGTTTTGGCTTTTCGTTGATTC 1148
||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1064 TCTCAGAGGACATGACAACAACAAACTCCAAGTCTCAAAGTTTTGGTTTTTCGTTGATTC 1123
Query 1149 TGTACGCTTGGAAGAGCGAGTAGA-ACAAAAGAGAGAGTTTCTGGGTGCTAACAAAAACC 1207
||||||| ||||||| |||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 1124 TGTACGCGTGGAAGAACGAGTAGACAAAAAAAAGAGAGTTTCTGGGTGCTAACAAAAACC 1183
Query 1208 TTATAAGAGTTTGTTGATTCCTTATCGACAttttttttGTTGATTCATGATTGGTTTCTG 1267
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1184 TTAAAAGAGTTTGTTGATTCCTTATCGACATTTTTTCTGTTGATTCATAATTGGTTTCTG 1243
Query 1268 CAATATATATTTCCTTACACAATGCTGGAACCAGTTTGGTCTTGAGGAATGTGATCTCTG 1327
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1244 CAATATATATTTCCTTACACAATGCTGGAACCAGTTTGGTCTTGACGAATGCGATCTCTG 1303
Query 1328 TATACATCTGTTACTTATGTTCTAGAAAGT-GTTTC-TTATGGTCTAT-TACCTAATTAC 1384
||||||||||||| |||||| |||||| | ||||| || | || | ||||| |||
Sbjct 1304 TATACATCTGTTATTTATGTCCTAGAACTTTGTTTCCTTCT--TC-AGCTACCTTGTTAA 1360
Query 1385 ACTGCTCTTTGATCTTGTAGCTTGTGAATGTTTAGATGCTTAGCAAACTATTGATTAGCT 1444
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1361 ACTGCTCTCTGATCTTGTAGCTGGTGAATGTTTAGATGCTTAGCAAACTATTGATTACCT 1420
Query 1445 TCTTCTTTC 1453
|||||||||
Sbjct 1421 TCTTCTTTC 1429
> Ahg477757 jgi|Araly1|477757|fgenesh2_kg.3__458__AT3G04860.1
Length=1305
Score = 60.2 bits (32), Expect = 4e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 268 CCACCAAGTGTTTGTTGAAATTCCTGAGAGAGAGA 302
|||| ||||||||||||||||||||||||||||||
Sbjct 214 CCACAAAGTGTTTGTTGAAATTCCTGAGAGAGAGA 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5