BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28160.1 Length=975 Score E Sequences producing significant alignments: (Bits) Value Ahg327005 jgi|Araly1|327005|fgenesh1_pm.C_scaffold_6002225 935 0.0 Ahg942435 jgi|Araly1|942435|scaffold_602979.1 872 0.0 Ahg351806 jgi|Araly1|351806|fgenesh1_pg.C_scaffold_6002399 745 0.0 Ahg338454 jgi|Araly1|338454|fgenesh1_pg.C_scaffold_2000553 281 5e-75 Ahg931168 jgi|Araly1|931168|scaffold_303625.1 75.0 1e-12 Ahg943935 jgi|Araly1|943935|scaffold_700164.1 56.5 4e-07 > Ahg327005 jgi|Araly1|327005|fgenesh1_pm.C_scaffold_6002225 Length=1077 Score = 935 bits (506), Expect = 0.0 Identities = 813/959 (85%), Gaps = 29/959 (3%) Strand=Plus/Plus Query 26 CGTTTTTGTCACTACCTGATGAAATCATCTTGAGCTGTTTAGCCCGCATATCGAGATCGT 85 |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 128 CGTTTTTGTCGCTCCCTGATGAAATCATCTTGAACTGTTTAGCCCGCATATCGAGATCAC 187 Query 86 ACTATCCGAAACTCTCCCTAGTTTGCAAGACCTTCCGCACTCTCCTCATATCTAATGAGC 145 |||| |||||||||||||| || | ||||||||| ||| | || ||||| || || ||| Sbjct 188 ACTACCCGAAACTCTCCCTTGTCTCCAAGACCTTTCGCTCCCTTCTCATGTCCCATAAGC 247 Query 146 TCATTGTGGCGCGATTGCACCTCAAAACCCA-TGAAACCTTTTGTCATGTCTGCTTAAAG 204 ||| |||| |||||| ||||| |||| ||| |||||| |||| |||||||||||||||| Sbjct 248 TCAACGTGGAGCGATTTCACCTTAAAA-CCACTGAAACTTTTTTTCATGTCTGCTTAAAG 306 Query 205 TTTCCTGATAAACCTAATCCGTCAATGTTCACCCTCTGGATAAAACCTGGTAC-AATCTT 263 ||||||||| ||||| ||| || ||||||||||| ||||||||||||||| | |||| | Sbjct 307 CTTCCTGATAGACCTAGTCCCTCCATGTTCACCCTTTGGATAAAACCTGGT-CAAATCCT 365 Query 264 AACCAACCAACTTGAGAAGAACAAGAGGTCTACAAGAGATACTCGGTTGGTACAAATACC 323 || |||||||| |||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 366 AATGAACCAACTCGAGAAGAAGGAGAGGTCTACCGGAGATACTCGGTTGGTACAAATACC 425 Query 324 TTCTTCATATTATTATAATGTACCGTTTTACCTCGTTA-TGGTTGGTTCCGAAGTATACG 382 ||| ||||||||| |||| ||||| |||| || ||| | |||||||||||| | |||| Sbjct 426 TTCGTCATATTATAATAAAGTACCACTTTATGTCATTACT-GTTGGTTCCGAATTGTACG 484 Query 383 GACTCAGCCAACGCAATGATCCGTCCTCCAACATGTTTGTCCGTAATAAGGGGGATAttt 442 ||||||||||||||||||||||||||||||||||||| || |||||||||| | | ||| Sbjct 485 GACTCAGCCAACGCAATGATCCGTCCTCCAACATGTTGGTGCGTAATAAGGAGT-T-TTT 542 Query 443 -ttttGT-GTAAAGC-CCCAAACATGACTGTAGCTCGAGCTAAAGCCAGTGCAGTTGTCT 499 ||||| |||| | ||||| ||||| ||||||||||||||||||| ||||||| |||| Sbjct 543 GTTTTGCCGTAATTCTCCCAA-CATGATTGTAGCTCGAGCTAAAGCCCGTGCAGTCGTCT 601 Query 500 TCAATGGGAAAATATATGTGATGGGAGGTTGCATGGCTGATGAATCCGTGAATTGGGGTG 559 || ||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| Sbjct 602 TCTATGGGAAAATATATGTGATGGGAGGTTGCGCGGCTAATGAATCCGCGAATTGGGGTG 661 Query 560 AAGTTTTTGACATAAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGTCCTGAGTTCC 619 | ||||||||| ||||||||||| |||||||||||||||||||||||| || ||| ||| Sbjct 662 AGGTTTTTGACCCAAAGACTCAAATTTGGGAAGCTTTACCTGACCCTGGCCCGGAGCTCC 721 Query 620 GTTTTTCTTCAATTAGAAAAATAGATGTGTTCCAAGAAAAGCTTTACGTTAGAAGCAACG 679 | ||||||||||||||| |||||| ||| || ||| |||||||||| |||||||||||| Sbjct 722 GCTTTTCTTCAATTAGAGGAATAGAGGTGATCGAAGGAAAGCTTTACATTAGAAGCAACG 781 Query 680 AG-AAGAAAGACTCTGTTTATGATCCAAAAGAAG--AA-TGGAGA-GTGGTCAAAGGTTT 734 || || |||||||||||||||||||||||||||| || ||| || || | |||| | Sbjct 782 AGGAA-AAAGACTCTGTTTATGATCCAAAAGAAGGTAAATGG-GATGTTG-CAAAAAAAT 838 Query 735 AGACATGTTGAACAGGAATCTT-GGTTGTGGTACGATTGAAATTGTTCACTATGGCGGAA 793 ||| | | | | | || | |||||||| | ||||||||| | | ||||||| || | Sbjct 839 C-ACACCT-GCA-ATGTATGATAGGTTGTGGAATGATTGAAATAGCTAACTATGGTGGTA 895 Query 794 AACTCTTAATCTTATGGGACAAGGTAGATCTTTCTCATGACAAAGATATTTGGTGTGCGG 853 ||||||||||||||||||||||| | | || |||||| || ||||||||||||||||| Sbjct 896 AACTCTTAATCTTATGGGACAAGATTGGTCCTTCTCAAGAAAAAGATATTTGGTGTGCCT 955 Query 854 TGATTGCGCTTGAAAAACGTCATGGTAGTGATGAAGTTTGGGGAAACATTGAATGGGCT- 912 |||||||| |||| |||||| |||||| |||||||||||||||||| ||||| |||||| Sbjct 956 TGATTGCGATTGAGAAACGTGATGGTATTGATGAAGTTTGGGGAAAAATTGAGTGGGCTA 1015 Query 913 GATATTGTGCTGACGGTTCC-TAGCTCATACGTTTTCGTGAATAGTCTAG-AAACTGGT 969 | ||||||||| |||||||| | |||||||||||||| || |||||||| |||| ||| Sbjct 1016 G-TATTGTGCTTACGGTTCCGT-GCTCATACGTTTTCTTGTATAGTCTACTAAACAGGT 1072 > Ahg942435 jgi|Araly1|942435|scaffold_602979.1 Length=1136 Score = 872 bits (472), Expect = 0.0 Identities = 641/721 (89%), Gaps = 18/721 (2%) Strand=Plus/Plus Query 1 ATGAATTCTGAAGTCG-AACGTCCATCGTTTTTGTCACTACCTGATGAAATCATCTTGAG 59 |||| ||||||| ||| || ||||||||||||||||||| ||| |||||||| || | | Sbjct 25 ATGACTTCTGAATTCGCAA-GTCCATCGTTTTTGTCACTTCCTCATGAAATCGTCCTAAA 83 Query 60 CTGTTTAGCCCGCATATCGAGATCGTACTATCCGAAACTCTCCCTAGTTTGCAAGACCTT 119 ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 84 CTGTTTAGCTCGCATATCGAGATCGTACTATCCGAAACTCTCCCTAGTCTGCAAGACATT 143 Query 120 CCGCACTCTCCTCATATCTAATGAGCTCATTGTGGCGCGATTGCACCTCAAAACCCATGA 179 |||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||| || Sbjct 144 TCGCACTCTCCTCATATCTAAAGAGCTCACCGTGGCGCGAGTGCACCTTAAAACCCACGA 203 Query 180 AACCTTTTGTCATGTCTGCTTAAAGTTTCCTGATAAACCTAATCCGTCAATGTTCACCCT 239 |||||||| ||||||||||||| |||| ||||||| ||||||||| |||||||||||||| Sbjct 204 AACCTTTTTTCATGTCTGCTTACAGTTACCTGATAGACCTAATCCTTCAATGTTCACCCT 263 Query 240 CTGGATAAAACCTGGTAC-AATCTTAACCAACCAACTTGAGAAGAACAAGAGGTCTACAA 298 |||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| Sbjct 264 CTGGATAAAACCTGGT-CAAATCTTAACCAACCAACTTGAGAAGAACGAGAGGTCTACCG 322 Query 299 GAGATACTCGGTTGGTACAAATACCTTCTTCATATTATTATAATGTACCGTTTTACCTCG 358 ||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| || Sbjct 323 GAGATACTCGGTTGGTACAAATACCTTCTTCATATTATTCTAAAGTACCACCTTATGTCA 382 Query 359 TTA-TGGTTGGTTCCGAAGTA-TACGGACTCAGCCAAC-GCAATGATCCGTCCTCCAACA 415 ||| || ||||||||||| | |||||||||||||| | |||||||||||||||||| || Sbjct 383 TTACTG-TTGGTTCCGAA-TCGTACGGACTCAGCCA-CTGCAATGATCCGTCCTCCATCA 439 Query 416 TGTTTGTCCGTAATAAGGGGGATAttttt-ttGT-GTAAAGCCCCAAACATGACTGTAGC 473 ||| || ||||| |||||| | ||||| ||| ||||||||||||||||||||||||| Sbjct 440 TGTGGGTTCGTAAGAAGGGG-AC-TTTTTGTTGGCGTAAAGCCCCAAACATGACTGTAGC 497 Query 474 TCGAGCTAAAGCCAGTGCAGTT-GTCTTCAATGGGAAAATATATGTGATGGGAGGTTGCA 532 |||||| |||||| ||| || ||| ||| ||||||||||||||| ||||||||||||| Sbjct 498 TCGAGCCAAAGCCCTTGC-GTGCGTCCTCAGTGGGAAAATATATGTCATGGGAGGTTGCA 556 Query 533 TGGCTGATGAATCCGTGAATTGGGGTGAAGTTTTTGACATAAAGACTCAAACTTGGGAAG 592 |||||||||| ||||||||||| |||| ||||| ||||||||| |||||||||||||| Sbjct 557 GGGCTGATGAACCCGTGAATTGGTGTGAGGTTTTCGACATAAAGTCTCAAACTTGGGAAC 616 Query 593 CTTTACCTGACCCTGG-TCCTGAGTTCCGTTTTTCTTCAATTAGAAAAATAGATGTGTTC 651 |||||||||||||||| || |||| ||||||||||||||||||||||| |||| |||||| Sbjct 617 CTTTACCTGACCCTGGCTC-TGAGCTCCGTTTTTCTTCAATTAGAAAATTAGAGGTGTTC 675 Query 652 CAAGAAAAGCTTTACGTTAGAAGCAACGAGAAGAAAGACTCTGTTTATGATCCAAAAGAA 711 ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 676 AAAGAAAAGCTTTACGTTAGAAGCAATGAGGAGAAAGACTCTGTTTATGATCCAAAAGAA 735 Query 712 G 712 | Sbjct 736 G 736 Score = 302 bits (163), Expect = 4e-81 Identities = 231/262 (88%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 710 AAGAATGGAGAGTGGTCAAAGGTTTAGACATGTTGAACAGGAATCTTGGTTGTGGTACGA 769 ||||||| ||| |||||| ||||||||| ||||||||| ||||||||||||||| | || Sbjct 842 AAGAATGTAGACTGGTCAGAGGTTTAGATATGTTGAACCTGAATCTTGGTTGTGGAATGA 901 Query 770 TTGAAATTGTTCACTATGGCGGA-AAACTCTTAATCTTATGGGACAAG---GTAGATC-- 823 ||||||| | | ||||||| || |||||||||||||||||||||||| || ||| Sbjct 902 TTGAAATAGCTAACTATGG-TGAGAAACTCTTAATCTTATGGGACAAGTTTGTTCATCGT 960 Query 824 --T--TTCTCATGACAAAGATATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTCATGGT 879 | || ||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 961 GGTACTTGTCAAGACAAAGATATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTGATGGT 1020 Query 880 AGTGATGAAGTTTGGGGAAACATTGAATGGGCTGATATTGTGCTGACGGTTCCTAGCTCA 939 |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| Sbjct 1021 AGTGATGAAGTTTGGGGAAACATTGAGTGGGCTGATATTGTGATGACGGTTTCTAGCTCA 1080 Query 940 TACGTTTTCGTGAATAGTCTAG 961 |||||||||||||||||||||| Sbjct 1081 TACGTTTTCGTGAATAGTCTAG 1102 > Ahg351806 jgi|Araly1|351806|fgenesh1_pg.C_scaffold_6002399 Length=1038 Score = 745 bits (403), Expect = 0.0 Identities = 605/700 (86%), Gaps = 23/700 (3%) Strand=Plus/Plus Query 26 CGTTTTTGTC---ACTACCTGATGAAATCATCTTGAGCTGTTTAGCCCGCATATCGAGAT 82 |||||||||| || |||||||||||| |||||| ||||||||||||||||||||||| Sbjct 128 CGTTTTTGTCGTTGCTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGAT 187 Query 83 CGTACTATCCGAAACTCTCCCTAGTTTGCAAGACCTTCCGCACTCTCCTCATATCTAATG 142 | |||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 188 CATACTATGCGAAACTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATTTCTAATG 247 Query 143 AGCTCATTGTGGCGCGATTGCACCTCAAAACCCATGAAACCTT-TTGTCATGTCTGCTTA 201 |||||| ||||||| |||||||||| ||||||||| ||||||| || ||||||||||||| Sbjct 248 AGCTCACTGTGGCGAGATTGCACCTTAAAACCCATAAAACCTTATT-TCATGTCTGCTTA 306 Query 202 AAG-TTTCCTGATAAACCTAATCCGTCAATGTTCACCCTCTGGATAAAACCTGGTAC-AA 259 || ||||| ||||||||| | | || |||| ||||||||||||||||||| | || Sbjct 307 CAGTTTTCC-GATAAACCTTGTTCATCCTTGTTTGTCCTCTGGATAAAACCTGGT-CAAA 364 Query 260 TCTTAACCAACCAACTTGAGAAGAACAAGAGGTCTA-CAAGAGATACTCGGTTGGTACAA 318 | ||||||||||||| |||||||| |||| |||| | |||||||||||||||||| | Sbjct 365 CCCTAACCAACCAACTCGAGAAGAAGGAGAGATCTATC-GGAGATACTCGGTTGGTACCA 423 Query 319 ATACCTTCTTCATATTATTATAATGTACCGTTTTAC-CTCGTTAT-GGTTGGTTCCGAAG 376 ||||||||||| |||| || || ||||| |||||| | | || | |||||||| |||| Sbjct 424 ATACCTTCTTCCTATTGTTCTACGGTACCATTTTACAC-CATT-TCAGTTGGTTCAGAAG 481 Query 377 TATACGGACTCAGCCAACGCAATGATCCGTCCTCCAACATGTTTGTCCGTAATAAGGGGG 436 | |||||||||| ||| |||||||| ||||||| |||| ||||||||||| | | Sbjct 482 TGTACGGACTCAAACAATATAATGATCCATCCTCCATGATGTGGGTCCGTAATAA-GAAG 540 Query 437 ATA-tt-tttttGTGTAAAGCCCCAAACATGACTGTAGCTCGAGCTAAAGCCAGTGCA-G 493 | | || |||| | |||||||||| |||||||||||||||||||| ||||||| |||| | Sbjct 541 A-ACTTGTTTTGGCGTAAAGCCCCCAACATGACTGTAGCTCGAGCGAAAGCCATTGCACG 599 Query 494 TTGTCTTCAATGGGAAAATATATGTGATGGGAGGTTGCATGGCTGATGAATCCGTGAATT 553 ||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||| Sbjct 600 -CGTCCACAATGGGAAAATATATGTAATGGGAGGTTGCAGGGCTGATGAATCCGCGAATT 658 Query 554 GGGGTGAAGTTTTTGACATAAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGTC-CT 612 ||||||| ||||| ||||||| |||||||||||||||| |||||||||||||||| | || Sbjct 659 GGGGTGAGGTTTTCGACATAATGACTCAAACTTGGGAACCTTTACCTGACCCTGG-CGCT 717 Query 613 GAGTTCCGTTTTTCTTCAATTAGAAAAATAGATGTGTTCCAAGAAAAGCTTTACGTTAGA 672 ||| |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 718 GAGCTCCGCTTTTCTTCAATTAGAAAAATAGAAGTGTTCCAAGGAAAGCTTTACGTTAGA 777 Query 673 AGCAACGAGAAGAAAGACTCTGTTTATGATCCAAAAGAAG 712 ||||| |||||||||||||||||||||||||||||||||| Sbjct 778 AGCAATGAGAAGAAAGACTCTGTTTATGATCCAAAAGAAG 817 Score = 187 bits (101), Expect = 1e-46 Identities = 178/213 (84%), Gaps = 13/213 (6%) Strand=Plus/Plus Query 763 GGTACGATTGAAATTGTTCACTATGGCGGAAAACTCTTAATCTTATGGGACAA----G-G 817 |||| ||||||||| | | ||||||| || ||||||||||||||||||||||| | | Sbjct 817 GGTATGATTGAAATAGCTAACTATGGTGGGAAACTCTTAATCTTATGGGACAAGTTTGTG 876 Query 818 --T-A-GAT-CTTTCTCATGACAAAGATATTTGGTGTGCGGTGATTGCGCTTGAAAAACG 872 | | | | | || ||| || ||||||||||||||||| ||||||||||||||| ||| Sbjct 877 CTTCATGGTAC-TTGTCAAGAGAAAGATATTTGGTGTGCCCTGATTGCGCTTGAAAGACG 935 Query 873 TC-ATGGTAGTGATGAAGTTTGGGGAAACATTGAATGGGCTGATATTGTGCTGACGGTTC 931 | ||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||| Sbjct 936 -CGATGGTAGTGATGAAGTTTGGGGAAACATTGACTGGGCTAATATTGTGTTGACCGTTC 994 Query 932 CTAGCTCATACGTTTTCGTGAATAGTCTAGAAA 964 ||| | |||| ||||| |||||||||||| ||| Sbjct 995 CTAACGCATATGTTTTTGTGAATAGTCTAAAAA 1027 > Ahg338454 jgi|Araly1|338454|fgenesh1_pg.C_scaffold_2000553 Length=816 Score = 281 bits (152), Expect = 5e-75 Identities = 326/407 (80%), Gaps = 24/407 (6%) Strand=Plus/Plus Query 21 TCCATCGTTTTTGTCACTACCTGATGAAATCATCTTGAGCTGTTTAGCCCGCATATCGAG 80 |||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||| |||| Sbjct 36 TCCATCATTTTTGTCACTTCCTGAAGAAATCATCTTGACCTGTTTAGCCCGCATACCGAG 95 Query 81 ATCGTACTATCCGAAACTCTCCCTAGTTTGCAAGACCTTCCGCACTCTCCTCATATCTAA 140 ||||||||||||||||||||||||||| ||||||||||| ||| ||||| || |||| || Sbjct 96 ATCGTACTATCCGAAACTCTCCCTAGTCTGCAAGACCTTTCGCTCTCTCATCGTATCAAA 155 Query 141 TGAGCTCATTGTGGCGCGATTGCACCTCAAAACCCATGAAACCTTTTGTCATGTCTG-CT 199 ||||||| | || ||||| ||||| ||||| || |||||| | | ||| ||||| || Sbjct 156 AGAGCTCAACGACGCCCGATTTCACCTTAAAACACAAGAAACCGTGTATCAAGTCTGTCT 215 Query 200 TAAAGTTT-CCTGATAAACCTAATCCGTCAATGTT-CACCCTCTGGATAAAACCTGGTAC 257 | ||||| || ||||| ||| |||| || || | |||||||||||||||||||||| | Sbjct 216 -ACAGTTTACC-GATAATCCTCATCCCTCT-TGGTACACCCTCTGGATAAAACCTGGT-C 271 Query 258 AA-TCTTAACCAACCAACTTGAGAAGAACAAGAGGTCTACAAGAGAT-ACTCGGTTGGTA 315 || || ||||||||||||| ||| |||| | || ||||| | | || | |||||||||| Sbjct 272 AAATCCTAACCAACCAACTCGAGGAGAAGACGAAGTCTA-ACCATATTATTCGGTTGGTA 330 Query 316 CAAATACCTTCTTCATATTATTATAATGTACCGTTTTAC-C-TCGTTATG-GTTGGTTCC 372 | | |||||| | ||| | | ||||||| || || | | ||| | |||||||| Sbjct 331 -A----C-TTCTTCTTGTTACTCTTATGTACCATT--ACGCATAGTT-TCCGTTGGTTCA 381 Query 373 GAAGTATACGGACTCAGCCAA-CGCAATGATCCGTCCTCCAACATGT 418 ||| | |||||| |||||| | | || || ||||||||| ||||||| Sbjct 382 GAAATGTACGGAATCAGCCGATC-CAGTGCTCCGTCCTCGAACATGT 427 > Ahg931168 jgi|Araly1|931168|scaffold_303625.1 Length=225 Score = 75.0 bits (40), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 5/76 (7%) Strand=Plus/Plus Query 841 ATTTGGTGTGCGGTGATTGCGCTTGAAAAACGTCATGGTAGTGATGA-AGTTTGGGGAAA 899 |||||||||||||||||||||||||||| || || | |||||| || | |||||||||| Sbjct 70 ATTTGGTGTGCGGTGATTGCGCTTGAAAGACA-CA-G-TAGTGAAGAGA-TTTGGGGAAA 125 Query 900 CATTGAATGGGCTGAT 915 ||||| |||| |||| Sbjct 126 GATTGAGTGGGTTGAT 141 > Ahg943935 jgi|Araly1|943935|scaffold_700164.1 Length=1232 Score = 56.5 bits (30), Expect = 4e-07 Identities = 33/34 (97%), Gaps = 1/34 (3%) Strand=Plus/Plus Query 836 AAGAT-ATTTGGTGTGCGGTGATTGCGCTTGAAA 868 ||||| |||||||||||||||||||||||||||| Sbjct 1071 AAGATGATTTGGTGTGCGGTGATTGCGCTTGAAA 1104 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36216771150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5