BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28180.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327005 jgi|Araly1|327005|fgenesh1_pm.C_scaffold_6002225 1175 0.0
Ahg942435 jgi|Araly1|942435|scaffold_602979.1 915 0.0
Ahg351806 jgi|Araly1|351806|fgenesh1_pg.C_scaffold_6002399 857 0.0
Ahg925158 jgi|Araly1|925158|scaffold_200719.1 372 3e-102
Ahg338454 jgi|Araly1|338454|fgenesh1_pg.C_scaffold_2000553 268 5e-71
Ahg329612 jgi|Araly1|329612|fgenesh1_pm.C_scaffold_7001839 113 2e-24
Ahg943935 jgi|Araly1|943935|scaffold_700164.1 56.5 4e-07
Ahg931168 jgi|Araly1|931168|scaffold_303625.1 54.7 1e-06
> Ahg327005 jgi|Araly1|327005|fgenesh1_pm.C_scaffold_6002225
Length=1077
Score = 1175 bits (636), Expect = 0.0
Identities = 879/996 (88%), Gaps = 17/996 (2%)
Strand=Plus/Plus
Query 65 CCTTACTTTACAAAACTTTCTCTAGAAAGGAAAAGAAGCTGACGTTTTTGTCGCTCCCTG 124
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 86 CCTTACTTTACAAAACCTTCTCTAGAAAGGAGAAGAAGCTGACGTTTTTGTCGCTCCCTG 145
Query 125 ATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGTACTATCCGAAACTCTCCC 184
|||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 146 ATGAAATCATCTTGAACTGTTTAGCCCGCATATCGAGATCACACTACCCGAAACTCTCCC 205
Query 185 TAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGCTCACCGTGGCGCGAGTGC 244
| |||| ||||||||| ||| | || ||||| || | |||||| ||||| |||| | |
Sbjct 206 TTGTCTCCAAGACCTTTCGCTCCCTTCTCATGTCCCATAAGCTCAACGTGGAGCGATTTC 265
Query 245 AACTTAAAACCTAC-GAAAGtttttttCATGTCTGCTTAAAGTTTCCTGATAAACCTAAT 303
| ||||||||| || |||| |||||||||||||||||||||| ||||||||| ||||| |
Sbjct 266 ACCTTAAAACC-ACTGAAACTTTTTTTCATGTCTGCTTAAAGCTTCCTGATAGACCTAGT 324
Query 304 CCATCAATGTTCACCCTCTGGATAAAACCTGGTCAAATCTTAACCAACCAACTTGAGAAG 363
|| || ||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 325 CCCTCCATGTTCACCCTTTGGATAAAACCTGGTCAAATCCTAATGAACCAACTCGAGAAG 384
Query 364 AACGAGAGGTCTACAGGAGCTACTCGGTTGGTACAAATACCTTCTTCATATTGTTCTATT 423
|| ||||||||||| |||| |||||||||||||||||||||||| ||||||| | ||
Sbjct 385 AAGGAGAGGTCTACCGGAGATACTCGGTTGGTACAAATACCTTCGTCATATTATAATAAA 444
Query 424 GTACCACATTACCTAATTTCTGTTGGTTCCGAAGTATACGGACTCAGCCAACACAATGAT 483
||||||| ||| | ||| |||||||||||||| | |||||||||||||||| |||||||
Sbjct 445 GTACCACTTTATGTCATTACTGTTGGTTCCGAATTGTACGGACTCAGCCAACGCAATGAT 504
Query 484 CCGTCCTCCAACATGTTTGTCCGTAACAAGGAGGATTTGTTTTGGTGTAATGC-CCCAAA 542
||||||||||||||||| || ||||| |||||| ||||||||| ||||| | |||||
Sbjct 505 CCGTCCTCCAACATGTTGGTGCGTAATAAGGAGTTTTTGTTTTGCCGTAATTCTCCCAA- 563
Query 543 CATGACTGTAGCTCGAGCGAAAGCCATCGGGCA--CGCCTACAATGGGAAACTATATGTC 600
||||| |||||||||||| |||||| || ||| || || | |||||||| |||||||
Sbjct 564 CATGATTGTAGCTCGAGCTAAAGCC--CGTGCAGTCGTCTTCTATGGGAAAATATATGTG 621
Query 601 ATGGGAGGTTGCAG-GGATGATGAATCCGTGAATTGGGGTGAGGTTTTTGACCCAAAGAC 659
|||||||||||| | || | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 622 ATGGGAGGTTGC-GCGGCTAATGAATCCGCGAATTGGGGTGAGGTTTTTGACCCAAAGAC 680
Query 660 TCAAACTTGGGAAGCTTTACCTGACCCTGGCTCTGAGCTCCGTTTTTCTTCAATTAGAAA 719
||||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 681 TCAAATTTGGGAAGCTTTACCTGACCCTGGCCCGGAGCTCCGCTTTTCTTCAATTAGAGG 740
Query 720 AATAGATGTGTTCCAAGAAAAGCTTTACGTTAGCAGCAACGAG-AAGATAGACTCTGTTT 778
|||||| ||| || ||| |||||||||| |||| ||||||||| || | |||||||||||
Sbjct 741 AATAGAGGTGATCGAAGGAAAGCTTTACATTAGAAGCAACGAGGAAAA-AGACTCTGTTT 799
Query 779 ATGATCCAAAAGAAGGTAAATGGAATGTTGCAGAAAAATCAC-CTGTGCAATGTATGAAT 837
||||||||||||||||||||||| |||||||| ||||||||| | |||||||||||| |
Sbjct 800 ATGATCCAAAAGAAGGTAAATGGGATGTTGCAAAAAAATCACACC-TGCAATGTATGA-T 857
Query 838 CTTGGTTGTGGAATGATTGAAATAGCTAACTATGGTGGAAAACTCTTAATCTTATGGGAC 897
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 858 A--GGTTGTGGAATGATTGAAATAGCTAACTATGGTGGTAAACTCTTAATCTTATGGGAC 915
Query 898 AAGGTTGGTCTTTCTCAAGACAAAGATATTTGGTGTGCGGTGATTGCGCTTGAAAAACGT 957
||| |||||| ||||||||| ||||||||||||||||| |||||||| |||| ||||||
Sbjct 916 AAGATTGGTCCTTCTCAAGAAAAAGATATTTGGTGTGCCTTGATTGCGATTGAGAAACGT 975
Query 958 GATGGTGTTGATGAAGTTTGGGGGAAAATTGAGTGGGCTAGTATCGTGCTTACGGTTCCA 1017
|||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 976 GATGGTATTGATGAAGTTTGGGGAAAAATTGAGTGGGCTAGTATTGTGCTTACGGTTCCG 1035
Query 1018 AGCTCATACGTTTTCTTGTATAGTCTACTAAATAGG 1053
||||||||||||||||||||||||||||||| |||
Sbjct 1036 TGCTCATACGTTTTCTTGTATAGTCTACTAAACAGG 1071
> Ahg942435 jgi|Araly1|942435|scaffold_602979.1
Length=1136
Score = 915 bits (495), Expect = 0.0
Identities = 656/733 (89%), Gaps = 14/733 (2%)
Strand=Plus/Plus
Query 107 CGTTTTTGTCGCTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGT 166
|||||||||| || ||| ||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 50 CGTTTTTGTCACTTCCTCATGAAATCGTCCTAAACTGTTTAGCTCGCATATCGAGATCGT 109
Query 167 ACTATCCGAAACTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGC 226
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 110 ACTATCCGAAACTCTCCCTAGTCTGCAAGACATTTCGCACTCTCCTCATATCTAAAGAGC 169
Query 227 TCACCGTGGCGCGAGTGCAACTTAAAACCTACGAAAGtttttttCATGTCTGCTTAAAGT 286
||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |||
Sbjct 170 TCACCGTGGCGCGAGTGCACCTTAAAACCCACGAAACCTTTTTTCATGTCTGCTTACAGT 229
Query 287 TTCCTGATAAACCTAATCCATCAATGTTCACCCTCTGGATAAAACCTGGTCAAATCTTAA 346
| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TACCTGATAGACCTAATCCTTCAATGTTCACCCTCTGGATAAAACCTGGTCAAATCTTAA 289
Query 347 CCAACCAACTTGAGAAGAACGAGAGGTCTACAGGAGCTACTCGGTTGGTACAAATACCTT 406
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 290 CCAACCAACTTGAGAAGAACGAGAGGTCTACCGGAGATACTCGGTTGGTACAAATACCTT 349
Query 407 CTTCATATTGTTCTATTGTACCACATTACCTAATTTCTGTTGGTTCCGAAGTA-TACGGA 465
||||||||| ||||| ||||||| ||| | ||| |||||||||||||| | ||||||
Sbjct 350 CTTCATATTATTCTAAAGTACCACCTTATGTCATTACTGTTGGTTCCGAA-TCGTACGGA 408
Query 466 CTCAGCCAACA-CAATGATCCGTCCTCCAACATGTTTGTCCGTAACAAGGAGGA-TTTGT 523
|||||||| | ||||||||||||||||| ||||| || ||||| |||| ||| ||| |
Sbjct 409 CTCAGCCA-CTGCAATGATCCGTCCTCCATCATGTGGGTTCGTAAGAAGG-GGACTTT-T 465
Query 524 T-TTGGTGTAATGCCCCAAACATGACTGTAGCTCGAGCGAAAGCCATCGGGCACG-CCTA 581
| |||| |||| |||||||||||||||||||||||||| |||||| | | | || |||
Sbjct 466 TGTTGGCGTAAAGCCCCAAACATGACTGTAGCTCGAGCCAAAGCCCTTGCGTGCGTCCT- 524
Query 582 CAATGGGAAACTATATGTCATGGGAGGTTGCAGGGATGATGAATCCGTGAATTGGGGTGA 641
|| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 525 CAGTGGGAAAATATATGTCATGGGAGGTTGCAGGGCTGATGAACCCGTGAATTGGTGTGA 584
Query 642 GGTTTTTGACCCAAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGCTCTGAGCTCCG 701
|||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 585 GGTTTTCGACATAAAGTCTCAAACTTGGGAACCTTTACCTGACCCTGGCTCTGAGCTCCG 644
Query 702 TTTTTCTTCAATTAGAAAAATAGATGTGTTCCAAGAAAAGCTTTACGTTAGCAGCAACGA 761
||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| ||
Sbjct 645 TTTTTCTTCAATTAGAAAATTAGAGGTGTTCAAAGAAAAGCTTTACGTTAGAAGCAATGA 704
Query 762 GAAGATAGACTCTGTTTATGATCCAAAAGAAGGTAAAT-GGAATGTTGCAGAAAAATCAC 820
| ||| |||||||||||||||||||||||||||||||| ||| |||| ||||||| |||
Sbjct 705 GGAGAAAGACTCTGTTTATGATCCAAAAGAAGGTAAATCGGA-TGTTTTAGAAAAACCAC 763
Query 821 CTGTGCA-ATGTA 832
|||| | |||||
Sbjct 764 ATGTG-AGATGTA 775
Score = 255 bits (138), Expect = 4e-67
Identities = 199/225 (88%), Gaps = 17/225 (8%)
Strand=Plus/Plus
Query 833 TGAATCTTGGTTGTGGAATGATTGAAATAGCTAACTATGGTGGA-AAACTCTTAATCTTA 891
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 881 TGAATCTTGGTTGTGGAATGATTGAAATAGCTAACTATGGT-GAGAAACTCTTAATCTTA 939
Query 892 TGGGACAAGGTTGGTC-T--T--T-C---TCAAGACAAAGATATTTGGTGTGCGGTGATT 942
||||||||| ||| || | | | | |||||||||||||||||||||||||||||||
Sbjct 940 TGGGACAAGTTTGTTCATCGTGGTACTTGTCAAGACAAAGATATTTGGTGTGCGGTGATT 999
Query 943 GCGCTTGAAAAACGTGATGGT-GTTGATGAAGTTTGGGGGAAA-ATTGAGTGGGCT-AGT 999
||||||||||||||||||||| || |||||||||||||| ||| |||||||||||| | |
Sbjct 1000 GCGCTTGAAAAACGTGATGGTAGT-GATGAAGTTTGGGG-AAACATTGAGTGGGCTGA-T 1056
Query 1000 ATCGTGCTTACGGTTCCAAGCTCATACGTTTTCTTGTATAGTCTA 1044
|| ||| | |||||| | ||||||||||||||| || ||||||||
Sbjct 1057 ATTGTGATGACGGTTTCTAGCTCATACGTTTTCGTGAATAGTCTA 1101
> Ahg351806 jgi|Araly1|351806|fgenesh1_pg.C_scaffold_6002399
Length=1038
Score = 857 bits (464), Expect = 0.0
Identities = 652/743 (88%), Gaps = 11/743 (1%)
Strand=Plus/Plus
Query 61 GTGTCCTTACTTTACAAAACTTTCTCTAGAAAGGAAAAGAAGCTGACGTTTTTGTC---G 117
||| |||||||||||| ||| ||||||||||||||| ||| ||||||||||||||| |
Sbjct 82 GTGGCCTTACTTTACACAACGTTCTCTAGAAAGGAAGAGACGCTGACGTTTTTGTCGTTG 141
Query 118 CTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGTACTATCCGAAA 177
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 142 CTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCATACTATGCGAAA 201
Query 178 CTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGCTCACCGTGGCG 237
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 202 CTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATTTCTAATGAGCTCACTGTGGCG 261
Query 238 CGAGTGCAACTTAAAACCTACGAAAGtttttttCATGTCTGCTTAAAGTTT-CCTGATAA 296
|| |||| ||||||||| | ||| || ||||||||||||||| ||||| || |||||
Sbjct 262 AGATTGCACCTTAAAACCCATAAAACCTTATTTCATGTCTGCTTACAGTTTTCC-GATAA 320
Query 297 ACCTAATCCATCAATGTTCACCCTCTGGATAAAACCTGGTCAAATCTTAACCAACCAACT 356
|||| | |||| |||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 321 ACCTTGTTCATCCTTGTTTGTCCTCTGGATAAAACCTGGTCAAACCCTAACCAACCAACT 380
Query 357 TGAGAAGAACGAGAGGTCTA-CAGGAGCTACTCGGTTGGTACAAATACCTTCTTCATATT 415
|||||||| ||||| |||| | |||| |||||||||||||| |||||||||||| ||||
Sbjct 381 CGAGAAGAAGGAGAGATCTATC-GGAGATACTCGGTTGGTACCAATACCTTCTTCCTATT 439
Query 416 GTTCTATTGTACCACATTAC-CTAATTTCTGTTGGTTCCGAAGTATACGGACTCAGCCAA 474
|||||| |||||| |||| | | |||| |||||||| ||||| |||||||||| |||
Sbjct 440 GTTCTACGGTACCATTTTACACCA-TTTCAGTTGGTTCAGAAGTGTACGGACTCAAACAA 498
Query 475 CACAATGATCCGTCCTCCAACATGTTTGTCCGTAACAAGGAGGATTTGTTTTGGTGTAAT 534
| |||||||| ||||||| |||| |||||||| ||| || | ||||||||| ||||
Sbjct 499 TATAATGATCCATCCTCCATGATGTGGGTCCGTAATAAGAAGAACTTGTTTTGGCGTAAA 558
Query 535 GCCCCAAACATGACTGTAGCTCGAGCGAAAGCCATCGGGCACG-CCTACAATGGGAAACT 593
||||| ||||||||||||||||||||||||||||| | | || || ||||||||||| |
Sbjct 559 GCCCCCAACATGACTGTAGCTCGAGCGAAAGCCATTGCACGCGTCC-ACAATGGGAAAAT 617
Query 594 ATATGTCATGGGAGGTTGCAGGGATGATGAATCCGTGAATTGGGGTGAGGTTTTTGACCC 653
|||||| |||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 618 ATATGTAATGGGAGGTTGCAGGGCTGATGAATCCGCGAATTGGGGTGAGGTTTTCGACAT 677
Query 654 AAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGCTCTGAGCTCCGTTTTTCTTCAAT 713
|| |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||
Sbjct 678 AATGACTCAAACTTGGGAACCTTTACCTGACCCTGGCGCTGAGCTCCGCTTTTCTTCAAT 737
Query 714 TAGAAAAATAGATGTGTTCCAAGAAAAGCTTTACGTTAGCAGCAACGAGAAGATAGACTC 773
|||||||||||| |||||||||| ||||||||||||||| ||||| ||||||| ||||||
Sbjct 738 TAGAAAAATAGAAGTGTTCCAAGGAAAGCTTTACGTTAGAAGCAATGAGAAGAAAGACTC 797
Query 774 TGTTTATGATCCAAAAGAAGGTA 796
|||||||||||||||||||||||
Sbjct 798 TGTTTATGATCCAAAAGAAGGTA 820
> Ahg925158 jgi|Araly1|925158|scaffold_200719.1
Length=1136
Score = 372 bits (201), Expect = 3e-102
Identities = 579/755 (77%), Gaps = 51/755 (7%)
Strand=Plus/Plus
Query 108 GTTTTTGTCGCTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGTA 167
||||||||| || |||||||| ||| |||||| |||||||||||||||||||||||| ||
Sbjct 60 GTTTTTGTCACTTCCTGATGATATCATCTTGACCTGTTTAGCCCGCATATCGAGATCATA 119
Query 168 CTATCCGAAACTC-TCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGC 226
||| ||||||||| | |||||||||||||| || || ||||| || | || || ||||
Sbjct 120 CTACCCGAAACTCGT-CCTAGTCTGCAAGAAATTTCGTTCTCTCATCGTCTCAAAAGAGC 178
Query 227 TCACCG-TGGCGCGAGTGCAACTTAAAAC-CTACGAAAGtttttttCATGTCTGCTTAAA 284
||| || | || ||| | || ||| | || | | |||| | ||||| ||| ||| |
Sbjct 179 TCATCGAT-GCACGAATTCATCTTGACACAC-ATGAAACCGTATTTCAAGTCCATTTACA 236
Query 285 G-TTTCCTGATAAACCTAATCCATCAAT-GTTCACCCTCTGGATAAAACCTGGTCAAATC 342
| || || | || | | ||| || | || |||||||||||| |||||||||||||||
Sbjct 237 GCTTACC-AAGAATCATTTTCCCTC-TTGGTACACCCTCTGGATTAAACCTGGTCAAATC 294
Query 343 TTAACCAACCAACT---TGAGAAGAACGA-GAGGTC-TACAGGAGCTACTCGGTTGGTAC 397
||||||||||||| |||||||| || || ||| ||| | || ||||||||||
Sbjct 295 CTAACCAACCAACTCGAAGAGAAGAA-GACGACGTCAAACA-AAAATATTCGGTTGGTAA 352
Query 398 AAATACCTTCTTCATATTGTTCTATTGTACCA-CATTACCTAATTTCTG-TTGGTTCCGA 455
|||||||||||| |||| | || ||||||| | | | | || | |||||| ||
Sbjct 353 AAATACCTTCTTGTTATT-CT-TA-TGTACCATC-TCGCATCCGTT-GGCCTGGTTCAGA 407
Query 456 AGTATACGGACTCAGCC-AACACAATGA-TCCGTCCTCCAACAT-GTTTGTCCGTAACAA 512
| | || ||| |||||| | | || | | ||||||||||| ||| | | ||| |||||
Sbjct 408 AATGTATGGAATCAGCCTATC-CAGT-ACTCCGTCCTCCATCATGGAGT-TCCAAAACAA 464
Query 513 GGAGGA-TTTGTTTTGGTGTAATGCCCCAAACATGAC-TGTAGCTCGAGCGAAAGCCA-T 569
|| || | ||| |||||||| ||||| ||||| | ||||||||||| |||||| | |
Sbjct 465 AGA-GACTGGGTTATGGTGTAAAGCCCCCGACATG-CGTGTAGCTCGAGAGAAAGCTATT 522
Query 570 -CGGGCACG-CCTACAATGGGAAACTATATGTCATGGGAGGTTG-CAGGGATGATGAATC 626
| || || ||| |||| ||| |||| || ||||| || || | ||| ||| |||||
Sbjct 523 GCAGG--CGTCCT-TGATGGCAAAATATACGTAATGGGCGG-TGCCGGGGCTGACGAATC 578
Query 627 CGTGAATTGGGGTGAGGTTTTTGACCCAAAGACTCAAACTTGGGAAGCTTTACCTGACCC 686
||| || |||||||||||||| |||||||||||||||||||||||| |||||| ||||||
Sbjct 579 CGTCAACTGGGGTGAGGTTTTCGACCCAAAGACTCAAACTTGGGAATCTTTACATGACCC 638
Query 687 TGGCTCTGAGCTCCGTTTTTCTTCAATTAGAAAAATAGATGTGTTCCAA-GA-AAAGCTT 744
||| |||||| ||| |||||||||||||||||||||| | || | || || ||| ||
Sbjct 639 TGGGGCTGAGCACCGGTTTTCTTCAATTAGAAAAATAGGTATGATAGAAGGAGAAA--TT 696
Query 745 TACGTTAGCAGCAACGAGAAGAT-AGACTCTGTTTATGATCCAAAAGAAGGTAAATGGAA 803
|||||| ||||| ||| || | || |||||||||||||||||||||||||||||| |
Sbjct 697 TACGTTCTAAGCAATGAGGAG-TGGGATTCTGTTTATGATCCAAAAGAAGGTAAATGGGA 755
Query 804 TGTTGCA-GAAAAATCACCTGTGCAATGTATGAAT 837
|||| || ||| || || ||| || ||||| |||
Sbjct 756 TGTTACAAGAAGAA-CATTTGTACACTGTAT-AAT 788
> Ahg338454 jgi|Araly1|338454|fgenesh1_pg.C_scaffold_2000553
Length=816
Score = 268 bits (145), Expect = 5e-71
Identities = 319/400 (80%), Gaps = 24/400 (6%)
Strand=Plus/Plus
Query 109 TTTTTGTCGCTCCCTGATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGTAC 168
|||||||| || ||||| |||||| |||||| |||||||||||||||| |||||||||||
Sbjct 43 TTTTTGTCACTTCCTGAAGAAATCATCTTGACCTGTTTAGCCCGCATACCGAGATCGTAC 102
Query 169 TATCCGAAACTCTCCCTAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGCTC 228
|||||||||||||||||||||||||||||||| ||| ||||| || |||| || ||||||
Sbjct 103 TATCCGAAACTCTCCCTAGTCTGCAAGACCTTTCGCTCTCTCATCGTATCAAAAGAGCTC 162
Query 229 ACCGTGGCGCGAGTGCAACTTAAAAC-CTACGAAAGtttttttCATGTCTG-CTTAAAGT 286
| || || ||| | || |||||||| | | |||| | | ||| ||||| || | |||
Sbjct 163 AACGACGCCCGATTTCACCTTAAAACACAA-GAAACCGTGTATCAAGTCTGTCT-ACAGT 220
Query 287 TT-CCTGATAAACCTAATCCATCAATGTT-CACCCTCTGGATAAAACCTGGTCAAATCTT 344
|| || ||||| ||| |||| || || | |||||||||||||||||||||||||||| |
Sbjct 221 TTACC-GATAATCCTCATCCCTCT-TGGTACACCCTCTGGATAAAACCTGGTCAAATCCT 278
Query 345 AACCAACCAACTTGAGAAGAACGA-GAGGTCTACAGGAGCT-ACTCGGTTGGTACAAATA 402
|||||||||||| ||| |||| || || ||||| | | | | |||||||||| | |
Sbjct 279 AACCAACCAACTCGAGGAGAA-GACGAAGTCTA-ACCATATTATTCGGTTGGTA-ACTT- 334
Query 403 CCTTCTTCATATTGTTCTATTGTACCACATTAC-C-TAATTTCTGTTGGTTCCGAAGTAT 460
| ||||| || | || || |||||| |||| | || |||| |||||||| ||| | |
Sbjct 335 C-TTCTTGTTACTCTT--AT-GTACCA--TTACGCATAGTTTCCGTTGGTTCAGAAATGT 388
Query 461 ACGGACTCAGCCAA-CACAATGATCCGTCCTCCAACATGT 499
||||| |||||| | | || || ||||||||| |||||||
Sbjct 389 ACGGAATCAGCCGATC-CAGTGCTCCGTCCTCGAACATGT 427
> Ahg329612 jgi|Araly1|329612|fgenesh1_pm.C_scaffold_7001839
Length=1563
Score = 113 bits (61), Expect = 2e-24
Identities = 116/141 (82%), Gaps = 9/141 (6%)
Strand=Plus/Plus
Query 584 ATGGGAAACTATATGTCATGGGAGG-T-TGCAGGGATGATGAAT-CCGTGAATTGGGGTG 640
|||||||||||||||| |||||||| | || | | | |||| || || | |||||| ||
Sbjct 1022 ATGGGAAACTATATGTAATGGGAGGATGTG-AAGCA-GATG-ATACCACGCATTGGGCTG 1078
Query 641 AGGTTTTTGACCCAAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGCTCT-GAGCTC 699
|| |||| |||||||||||||||||||||||||||||||| || ||||| | | ||||||
Sbjct 1079 AGCTTTTCGACCCAAAGACTCAAACTTGGGAAGCTTTACCGGATCCTGG-TGTTGAGCTC 1137
Query 700 CGTTTTTCTTCAATTAGAAAA 720
|| | |||||| ||| ||||
Sbjct 1138 CGGTCCTCTTCAGTTA-AAAA 1157
> Ahg943935 jgi|Araly1|943935|scaffold_700164.1
Length=1232
Score = 56.5 bits (30), Expect = 4e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 920 AAGAT-ATTTGGTGTGCGGTGATTGCGCTTGAAA 952
||||| ||||||||||||||||||||||||||||
Sbjct 1071 AAGATGATTTGGTGTGCGGTGATTGCGCTTGAAA 1104
> Ahg931168 jgi|Araly1|931168|scaffold_303625.1
Length=225
Score = 54.7 bits (29), Expect = 1e-06
Identities = 61/74 (82%), Gaps = 11/74 (15%)
Strand=Plus/Plus
Query 925 ATTTGGTGTGCGGTGATTGCGCTTGAAA-A-AC-GTGATGGTGTTGATGAAGTTTGGGGG 981
|||||||||||||||||||||||||||| | || || | | || || || |||||||
Sbjct 70 ATTTGGTGTGCGGTGATTGCGCTTGAAAGACACAGT-A-G-TGAAGA-GA--TTTGGGG- 122
Query 982 AAA-ATTGAGTGGG 994
||| ||||||||||
Sbjct 123 AAAGATTGAGTGGG 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5