BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28210.1
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942438 jgi|Araly1|942438|scaffold_602982.1 2337 0.0
> Ahg942438 jgi|Araly1|942438|scaffold_602982.1
Length=1872
Score = 2337 bits (1265), Expect = 0.0
Identities = 1661/1845 (90%), Gaps = 56/1845 (3%)
Strand=Plus/Plus
Query 59 GACATCTCGAAGACCGAACT-GAGAAC-CGTGAAGAACATAGCAAAAGATTGAGACCAAC 116
|||||||||||||||||| | || ||| ||||||||| |||||||||||||||| |||
Sbjct 39 GACATCTCGAAGACCGAA-TCGA-AACTTATGAAGAACAGAGCAAAAGATTGAGACAAAC 96
Query 117 AAGTTTCCGTGATCAGAAGGTAACCATCCCTCAAGGTTGGTTAGATTGTCCTCGCTTTGG 176
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 97 AAGTTTCCGTGATCAGAACGTAACCATCCCTCAAGGTTGGTTAGATTGTCCTCGCTTTGG 156
Query 177 TCAACATATTGGATTAATCATTCCTTCGAAAGTTCCTCTCAGTGAATCTTACAACGATTG 236
|||| |||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 157 TCAAGATATTGGATTCATCATTCCTTCAAAAGTTCCTCTCAGTGAATCGTACAATGATTG 216
Query 237 TGTTCCTTCTGGCAAAAGATACAATTTCAAACAGTGGTT-A--ACT---A--A-GA---T 284
||||||||||||||||||||||||||||||| ||||||| | | | | | || |
Sbjct 217 TGTTCCTTCTGGCAAAAGATACAATTTCAAAGAGTGGTTCACTAGTGGAAGGACGAGGCT 276
Query 285 TGGTCTTGTGATTGATCTGACTAATACAACTCGTTACTATCATCCTAACACCGAGTTAAG 344
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 277 TGGTCTTGTGATTGATCTTACCAATACAACTCGTTACTATCATCCTAACACCGAGTTAAG 336
Query 345 ACAGAACCGTATCGAGTATGTTAAGATTCGTTGCAGTGGTCGTGATTCTGTGCCGGATAA 404
||| ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 337 ACATAACGGTATCAAGTATGTTAAGATTCGTTGCAGTGGTCGTGATGCTGTGCCGGATAA 396
Query 405 TGTGTCTGTAAACACATTTGTTCACGAGGTTACTCAGTTCGAGAATCATAACTTGTCGGA 464
|||||| ||||||||||||||| ||||||||| |||||||||| | ||||||| || |
Sbjct 397 TGTGTCGGTAAACACATTTGTTTACGAGGTTAATCAGTTCGAG-A--ATAACTTCTCACA 453
Query 465 GAAGTATCTTCTTGTGCATTGTACTCACGGACATAATCGTACAGGGTTTATGATTGTTCA 524
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GAAGTATGTTCTTGTGCATTGTACTCACGGACATAATCGTACAGGGTTTATGATTGTTCA 513
Query 525 TTACCTTATGCGGTCTAGACCGATGATGAGTGTTACACAAGCCTTGAAAATATTTTCGGA 584
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 514 TTACCTTATGCGGTCTAGACCGATGATGAGTGTTACAGAAGCCTTGAAAATGTTTTCCGA 573
Query 585 TGCTCGCCCGCC-GGGTATCTATAAACCCGATTACATTGATGCTCTATACAGATTTTATC 643
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 574 TGCTCGCCCGCCTGGG-ATCTATAAACCCGATTACATTGATGCTCTATACAGTTTTTATC 632
Query 644 ATGAGGTTAAACCTGGGAGTGTTATATGTCCACCAACTCCTGAATGGAAGAGGTCTGAAG 703
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 ATGAAGTTAAACCTGAGAGTGTTATATGTCCACCAACTCCTGAATGGAAGAGGTCTGAAG 692
Query 704 AAGCTAAATTCGACGATGATGATAATGCTCTGTCTTACCGTG-AGGTACAAGGAAACAAT 762
||| |||| |||||||||||||| ||||||||||||||| || || | ||||||||||||
Sbjct 693 AAGTTAAAGTCGACGATGATGATGATGCTCTGTCTTACCCTGTAG-TGCAAGGAAACAAT 751
Query 763 CAGGAGGAGAATGTGCAG---TTGTCTAATGATGATGTTTTGGGGGATGAAATACCCTAT 819
||||||||||||||| || ||||| ||||||||| ||||||||||||| |||||||||
Sbjct 752 CAGGAGGAGAATGTGAAGAAGTTGTCGAATGATGATATTTTGGGGGATGACATACCCTAT 811
Query 820 GATCAAGAGGTGTCTTACCAG-AATTCAATTAATCATATGCTGAATATTTCTATGCAGTT 878
| ||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||
Sbjct 812 GGTCAAGAGGTTTCTTACCAGCAATT-AATTAATGATATGCTGAATATTTCTATGCAGTT 870
Query 879 CCCTGGCTCGCACCCTCTATCATTAGGTAGAGAGGCATTGCAACTCTTGAGGCA-ACGGT 937
|||||||||||||||| |||| ||||| || ||||||||||||||||||||||| | |||
Sbjct 871 CCCTGGCTCGCACCCTGTATCGTTAGGCAGGGAGGCATTGCAACTCTTGAGGCAGA-GGT 929
Query 938 ACTATTACGCGACATGGAAGGCAGATGGAACGCGGTACATGATGCTCTTGACTAGAGATG 997
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 930 ACTATTACGCGACATGGAAGGCAGATGGAACGCGGTATATGATGCTCTTGACTAGAGATG 989
Query 998 GATGTTATCTGGTTAATAGAGAGTATAGGTTTAGAAGAGTACAAATGCGTTTCCCTTGTG 1057
| |||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||
Sbjct 990 GGTGTTATCTGGTTAATAGAGAGTTTAGATTTAGAAGGGTACAAATGCGGTTCCCTTGTA 1049
Query 1058 AGTACGAGCCAAGTGATTATAAAGTGCATCATTACACATTGCTTGATGGAGAGATGGTTG 1117
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AGTACGACCCGAGTGATTATAAAGTGCATCATTACACATTGCTTGATGGAGAGATGGTTA 1109
Query 1118 TAGACACAATTAAGGAAGGAGAAACGCAGCGCCATGTGAGGAGGTACCTCGTGTACGATT 1177
|||||||| || ||| |||| || || | | || | |||||||||||||||||| ||||
Sbjct 1110 TAGACACATTTGAGGTGGGAGGAAGGCGGTGTCAGGCGAGGAGGTACCTCGTGTATGATT 1169
Query 1178 TGGTAGCGATCAACGGGCAATTTGTGGCAGAGAGGCCTTTTAGTGAAAGATGGAATATTC 1237
|||||||||| || ||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1170 TGGTAGCGATTAATGGGCAATCAGTGGCAGAGCGGCCTTTTAGTGAAAGATGGAATATTC 1229
Query 1238 TTGAGAGAGAGCTGATCAAACCGCGTAATGACGAGAAGAAGGTTAGGGATCATTGGTATA 1297
||||||||||| |||||| ||||||||| || ||||||||||||| | ||||||||||||
Sbjct 1230 TTGAGAGAGAGGTGATCAGACCGCGTAACGATGAGAAGAAGGTTATGAATCATTGGTATA 1289
Query 1298 GATATGATAAGGAGCCTTTTGGTGTACGGATCAAAGC-TTTTTGTTTACTCTCTGCTGTG 1356
|||| || | |||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1290 GATACGAGATGGAGCCTTTTGGGGTACGGATCAA-GCCTTTTTGTTTACTCTCTGCTGTG 1348
Query 1357 GAGAAGAAGGTTTTCAATGAGTTGATTCCACTGCTTTCACATGAATCAGACGGACTAATA 1416
||||||| || || | | |||||| |||||| ||||||| ||||||
Sbjct 1349 GAGAAGA---TTC-CA-T---------C----GCTTTCGCATGAAACAGACGGTCTAATA 1390
Query 1417 TTTCAAGGTTGGGACAATCCTTATGTTTTCGGACCCAACAAAGATCTACTGAAGTGGAAG 1476
|||||||| |||||| ||||||||||||||||| | || | | |||| |||| ||||||
Sbjct 1391 TTTCAAGGGTGGGACGATCCTTATGTTTTCGGAACGGACCACGGTCTATTGAAATGGAAG 1450
Query 1477 TTTGTGGAAACACTTGATTTTCTGTTTGATATGGACAAGTATGGACGTCAAATGCTCTTC 1536
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1451 TTTGTGGAAACACTTGATTTTCTGTTTGACATGGACAAGTATGGGCGTCAAATGCTCTTC 1510
Query 1537 TTGCAAGAACGTGGGAGGATGAAGCTTATGGAAGGCT-TTGCCGTTGAGTTTAGAGGTGA 1595
|||||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||
Sbjct 1511 TTGCAAGAACGTGGGAAGATGAAGCTTATGGAAGGCTATT-CCGTTGAATTTAGAGGTGA 1569
Query 1596 TGGTTGGGACAATGACCTGGCTAGTTACTGTGGAAAGATTGTGGAGTGTTCATGGGATAA 1655
||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1570 TGGTTGGGACAATAACCCGGCCAGTTACTGTGGAAAGATTGTAGAGTGTTCATGGGATAA 1629
Query 1656 GGAGAAGAAAGTATGGGTTAGTTTGCGGATTAGAGTTGATAAATCGAAACCGAATGGTAT 1715
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1630 GGAGAAGAAAGTATGGGTTAGTTTGCGGATCAGAGTTGATAAATCTAAACCGAATGGTAT 1689
Query 1716 CGGGACCGGTCGTAGCGTGATAAAGTGCATAGAAG-ATGACTTAACGAAAGAGGTTTTGC 1774
|| ||||||| ||||||||||||||||||| ||| ||||| | ||||| || |||||||
Sbjct 1690 TGGAACCGGTCATAGCGTGATAAAGTGCATA-AAGGATGACATCACGAAGGACGTTTTGC 1748
Query 1775 TGAAGGAGATCAAAGAGATTATCCTTCTACCGATGTACGTTGAGCGCAT-CGAAAATGAT 1833
|| ||||||||||| |||||| || ||| || ||||||||||| ||||| |||| |||
Sbjct 1749 TGGAGGAGATCAAAAAGATTACCCGTCTTCCAATGTACGTTGATCGCATTCGAAGG-GAT 1807
Query 1834 ACAAAAGAAGCTGCACGTCGCAAGCATGGAAACCGTAAAGGCTAA 1878
||| ||||||||| ||| ||||||||||||||||||||||| |||
Sbjct 1808 ACACAAGAAGCTGAACGCCGCAAGCATGGAAACCGTAAAGGGTAA 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70543133740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5