BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28220.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489645 jgi|Araly1|489645|fgenesh2_kg.6__2779__AT5G28220.1 1537 0.0
Ahg477754 jgi|Araly1|477754|fgenesh2_kg.3__455__AT3G04830.1 861 0.0
> Ahg489645 jgi|Araly1|489645|fgenesh2_kg.6__2779__AT5G28220.1
Length=1065
Score = 1537 bits (832), Expect = 0.0
Identities = 995/1071 (93%), Gaps = 22/1071 (2%)
Strand=Plus/Plus
Query 1 GGTACAGTCATAAACCGAACCGGCTCC-A----TGTTCTCTTCGTCGTCGTTCAATCAAA 55
|||||||| |||||||||||| | ||| | |||| ||||||||||||||| |||||
Sbjct 1 GGTACAGTAATAAACCGAACCAG-TCCGATGTTTGTTTTCTTCGTCGTCGTTCCATCAAC 59
Query 56 CAGATCCACAATGCTCGTAAGTTC-AAGCAA-AATCA-CAAGAGCGAG-AGAGATGGTGA 111
|||||||||| |||||||||| || || || | | ||| | | || |||||||||||
Sbjct 60 CAGATCCACATTGCTCGTAAG-TCGTAGTAAGTAGAAGCAAAATC-AGAAGAGATGGTGA 117
Query 112 CGAAAACAGAGGAGAAGCAATTGAACCAGCTAGAGATTCAAGTCGATAATGGCGGAGGCG 171
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 118 CGAAAACAGAGGAGACGCAATTGAACCAGCTCGAGATTCAAGTCGATAATGGCGGAGGTG 177
Query 172 GAACATGGGAGTATCTTTGCCTCGTTCGTAATCTCAAAGTTCGCCGGTCGGAGAAAGTGT 231
|| | |||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 178 GAGCTTGGGAGTATCTTTGTCTCGTTCGTAATCTCAAAATTCGCCGGTCGGAGAAAGTGT 237
Query 232 TAAAACACGGTTCCTCGATTTTGAATGAT-C-AGAAGAAACGATCTGCTCTTGGTCCAGA 289
||||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||
Sbjct 238 TAAAACACGGTTCCTCGATTTTGAATGATCCAAGAA-AAA-GATCTGCTCTTGGTCCAGA 295
Query 290 TGAATGGACACTAAATGAGCAGGTGGCAATTGCAGCTATGGACTGTCAATGTCTCGGTGT 349
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 296 TGAATGGACCCTAAATGAGCAAGTGGCAATTGCAGCTATGGACTGTCAATGTCTCGGTGT 355
Query 350 CGCACAGAGTTGCATTAAGGCTTTGCAGACA-AAATTTCCTGGGAGCAAAAGAGTTGGGA 408
||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 356 TGCACAGAATTGCATTAAGGCTTTGCAGA-AGAAATTTCCTGGGAGCAAAAGGGTTGGGA 414
Query 409 GGCTTGAGGCATTGCTTCTTGAAGCGAAGGGATTATGGGGAGAGGCTGAGGAAGCATATG 468
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 415 GGCTTGAGGCGTTACTTCTTGAAGCCAAGGGATTATGGGGAGAGGCTGAGGAAGCATATT 474
Query 469 CGAGTCTTTTGGAGGATAATCCACTCGACCAAGCGATACACAAACGAAGAGTGGCTATAT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CGAGTCTTTTGGAGGATAATCCACTCGACCAAGCGATACACAAACGAAGAGTGGCTATAT 534
Query 529 CCAAGGCACTAGGCAAACCTTCCATAGCCATTGAGCTTCTTAACAAATATCTTGAACTAT 588
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 535 CCAAGGCACTAGGCAAACCTTCCATAGCCATTGAGCTTCTTACCAAATATCTTGAACTAT 594
Query 589 TCATGGCTGATCATGATGCATGGAGAGAACTCGCAGAGCTTTACCTTTCCTTGCAAATGT 648
|||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||||
Sbjct 595 TCATGGCTGATCATGATGCATGGAGAGAGCTTGCAGAACTTTATCTTTCTTTGCAAATGT 654
Query 649 ATAAGCAAGCAGCTTTCTGCTATGAAGAGCTCATACTATCTCAGCCTACTGTTCCATTGT 708
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 655 ACAAACAAGCAGCTTTCTGCTACGAAGAGCTCATACTATCTCAGCCTACTGTTCCATTGT 714
Query 709 ACCACCTCGCATATGCTGAGGTTCTCTATACAATCGGTGGAGTAGAAAACATTATCTCAG 768
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 715 ACCACCTCGCATATGCTGACGTTCTCTATACAATCGGCGGAGTAGAAAACATTATCTCAG 774
Query 769 CAAGAAAATACTATGCAGCGACCGTAGATTTAACAGGCGGCAAAAACACTAGAGCTCTTC 828
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 775 CAAGAAAATACTATGCAGCAACCATAGATTTAACAGGCGGCAAAAACACCAGAGCTCTTC 834
Query 829 TCGGAATCTGCTTGTGTGCATCGGCCATTGCACAGCTCTCAAAAGGCAGGAACAAAGAGG 888
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 835 TCGGAATCTGCTTGTGTGCATCCGCCATTGCACAGCTCTCAAAAGGCAGGAACAAAGAGG 894
Query 889 ACAAAGACGCTACGGCAGCCCCAGAGCTTCATTCCCTGGCTGCAGCTGCAGTAGAGAAAG 948
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 895 ACAAAGACGCGACGGCAGCCCCAGAGCTTCATTCTCTGGCTGCAGCTGCAGTAGAGAAAG 954
Query 949 AATACAAGCAAAAAGCCCCGGACAAACTTCAACTCATCTCTTCCGCGTTAAGAATCTTGA 1008
| |||||||||||||| ||||||||||| || |||||||||||||||||||||| |||||
Sbjct 955 AGTACAAGCAAAAAGCTCCGGACAAACTCCAGCTCATCTCTTCCGCGTTAAGAAGCTTGA 1014
Query 1009 AGACTTGATCGCAAGTAAAC----GATGTTCTGGCCCACAAGACGCAAACG 1055
| | ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1015 AAATTTGATCGCAAGCAAACAAACGATGTTCTGGCCCACAAGACGCAAACG 1065
> Ahg477754 jgi|Araly1|477754|fgenesh2_kg.3__455__AT3G04830.1
Length=1026
Score = 861 bits (466), Expect = 0.0
Identities = 775/923 (84%), Gaps = 25/923 (3%)
Strand=Plus/Plus
Query 98 GAGAGAGATGGTGACGAAAACAGAGGAGA-AGCAATTGAACCAGCTAGAGATTCAAGTCG 156
|||||||||||||||||| || ||||||| | || |||||||| || |||| |||||| |
Sbjct 3 GAGAGAGATGGTGACGAAGACGGAGGAGACA-CAGTTGAACCAACTCGAGAATCAAGTTG 61
Query 157 ATAATGGCGGAGGCGGAACATGGGAGTATCTTTGCCTCGTTCGTAATCTCAAAG-TTCGC 215
| ||||| ||||| || ||||||||||| ||||| |||||||| ||| ||| |||||
Sbjct 62 AGAATGGAGGAGGAGGTGTTTGGGAGTATCTGTGCCTTGTTCGTAAGCTC-AAGATTCGC 120
Query 216 CGGTCGGAGAAAGTGTTAAAACACGGTTC-CTCGATTTTGAATGA-TCAGAAGAAA-CGA 272
|| || |||| ||| | || ||||| || |||||| ||||| || || | |||| |||
Sbjct 121 CGATCAGAGATTGTGCTCAAGCACGG-TCTCTCGATCTTGAACGATTC-G-GGAAAGCGA 177
Query 273 TCTGCTCTTGGTCCAGATGAATGGACACTAAATGAGCAGGTGGCAATTGCAGCTATGGAC 332
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 178 TCTGCTCTTGGTCCAGATGAATGGACACTGTATGAGCAGGTAGCAATTGCAGCTATGGAC 237
Query 333 TGTCAATGTCTCGGTGTCGCACAGAGTTGCATTAAGGCTTTGCAGACA-AAATTTCCTGG 391
||||||| ||| ||||| ||||||| |||||| ||||||||||||| | |||||||| |
Sbjct 238 TGTCAATCTCTTGGTGTTGCACAGAATTGCATCAAGGCTTTGCAGA-AGAAATTTCCAGA 296
Query 392 GAGCAAAAGAGTTGGGAGGCTTGAGGCAT-TGCTTCTTGAAGCGAAGGGATTATGGGGAG 450
||||||| | ||||| | ||| ||||| | |||| || ||||| |||||| | |||| ||
Sbjct 297 GAGCAAACGTGTTGGCAAGCTGGAGGC-TCTGCTGCTAGAAGCAAAGGGAATGTGGGAAG 355
Query 451 AGGCTGAGGAAGCATATGCGAGTCTTTTGGAGGATAATCCACTCGACCAAGCGATACACA 510
||||||| |||| ||| |||| || ||||||||||||||||| || |||| |||||||
Sbjct 356 AGGCTGAAAAAGCCTATTCGAGCCTGTTGGAGGATAATCCACTTGATCAAGTAATACACA 415
Query 511 AACGAAGAG-TGGCTATATCCAAGGCACTAGG-CAAACCTTCCATAGCCATTGAGCTTCT 568
|| ||| || ||||||| ||||||||| ||| |||||||||| |||||||||| | |||
Sbjct 416 AAAGAA-AGGTGGCTATGGCCAAGGCAC-AGGGCAAACCTTCCTTAGCCATTGAACATCT 473
Query 569 TAACAAATATCTTGAACTATTCATGGCTGATCATGATGCATGGAGAGAACTCGCAGAGCT 628
||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 474 GAACAAATATCTTGAAGTATTCATGGCTGATCATGATGCCTGGAGAGAACTTGCAGAAAT 533
Query 629 TTACCTTTCCTTGCAAATGTATAAGCAAGCAGCTTTCTGCTATGAAGAGCTCATACTATC 688
||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
Sbjct 534 TTATGTTTCCTTGCAAATGTACAAGCAAGCAGCTTTCTGCTATGAGGAGCTCATACTAAC 593
Query 689 TCAGCCTACTGTTCCATTGTACCACCTCGCATATGCTGAGGTTCTCTATACAATCGGTGG 748
|||||||||| |||||||||||||| | |||||||| || |||||||| ||||| |||||
Sbjct 594 TCAGCCTACTCTTCCATTGTACCACTTAGCATATGCCGATGTTCTCTACACAATGGGTGG 653
Query 749 AGTAGAAAACATTATCTCAGCAAGAAAATACTATGCAGCGACCGTAGATTTAACAGGCGG 808
| |||||||| | ||| |||||||||| ||||||||||| || |||| || ||||| ||
Sbjct 654 ACTAGAAAACCTCATCGCAGCAAGAAAGTACTATGCAGCAACTATAGACTTGACAGGTGG 713
Query 809 CAAAAACACTAGAGCTCTTCTCGGAATCTGCTTGTGTGCATCGGCCATTGCACAGCTCTC 868
|||| ||| ||||| ||||||||||| |||||||||| ||| || || |||||||| ||
Sbjct 714 TAAAAGCACAAGAGCACTTCTCGGAATATGCTTGTGTGGATCAGCGATCGCACAGCTGTC 773
Query 869 AAAAGGCAGGAACAAAGAGGACAAAGACGCTACGGCAGCCCCAGAGCTTCATTCCCTGGC 928
|||||| ||||||||||||||||| ||| | ||| || ||||||||||| || |||||
Sbjct 774 AAAAGGAAGGAACAAAGAGGACAAGGACA-T--GGCTGCACCAGAGCTTCAGTCTCTGGC 830
Query 929 TGCAGCTGCAGTAGAGAAAGAATACAAGCAAAAAGCCCCGGACAAA-CTTCAAC-TCATC 986
|||| ||||| | |||| ||| |||||||||||||| |||| | || || |||| || ||
Sbjct 831 TGCAACTGCATTGGAGAGAGAGTACAAGCAAAAAGCTCCGG-CTAAGCT-CAACCTCCTC 888
Query 987 TCTTCCGCGTTAAGAATCTTGAA 1009
|||| || || |||| ||||||
Sbjct 889 ACTTCTGCCTTGAGAAACTTGAA 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5