BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28230.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910917 jgi|Araly1|910917|Al_scaffold_0001_1171 579 3e-164
> Ahg910917 jgi|Araly1|910917|Al_scaffold_0001_1171
Length=1179
Score = 579 bits (313), Expect = 3e-164
Identities = 444/506 (88%), Gaps = 13/506 (3%)
Strand=Plus/Plus
Query 145 ATGATTTCTTCAATTAAACCGGTTTCGTCTTCCTTTAGCGCAATCACGGGCATAAGACGA 204
|||||||||||||||||||||||||| |||||||| | ||||||| | ||| | ||||||
Sbjct 1 ATGATTTCTTCAATTAAACCGGTTTCATCTTCCTTAACCGCAATCGCCGGCGTGAGACGA 60
Query 205 TCAATTCTGCCAAAGCTTCAATTTTCACCCTTTTCCATTATCGAAAACTTCCAAAAGCCT 264
||||||| | ||||||||| |||||| ||||| ||||||||| ||||||||||||||||
Sbjct 61 TCAATTCCGGCAAAGCTTCGATTTTCTCCCTTACCCATTATCGGAAACTTCCAAAAGCCT 120
Query 265 AATCATTTACCTCA-AAAGCCTCTTTTATCATCTTAGAATTTGTCGAATTTCACTTTTGC 323
|||| ||||||||| ||| |||||||||||| || ||||||||||||||||||| |||
Sbjct 121 AATCCTTTACCTCAGAAA-CCTCTTTTATCAGCTCAGAATTTGTCGAATTTCAC-TTT-- 176
Query 324 GGCGGCAGCAGCGTAGAGGAGTGAT-TTCTTAGAGTAGGAGCTTATGAGTCTGATTGGCC 382
|||||| | ||| ||||||||||| || |||| || |||||||| ||| |||| || |
Sbjct 177 GGCGGC-G--GCGCAGAGGAGTGATGTTTTTAGGGTTGGAGCTTACGAGGCTGACCGGTC 233
Query 383 TCGTCTGATTGAAATCGGTATCAACGTTCCTGACGAACAATCGGGACAGAAGGTTAAGCT 442
||||| |||||||||||||||| ||||||||||||||||||||||||||||||| || |
Sbjct 234 TCGTCCGATTGAAATCGGTATCGACGTTCCTGACGAACAATCGGGACAGAAGGTGAATAT 293
Query 443 TGGGATCTG-TTGCGCAACTTGGTGGGCATTGCACATTGTGTTCAATATCTAGAAAAAGA 501
|||||||| || ||| ||||||||||||||| || |||||||||||||||| || ||||
Sbjct 294 TGGGATCTACTT-CGCGACTTGGTGGGCATTGAACGTTGTGTTCAATATCTACAACAAGA 352
Query 502 AGGTTTTGAATGCTTTTCCTTACATGTG-TCTAACTTCGACGCTCTCTCTTCCTTCTGGC 560
|||||||||||||||| |||||| ||| | |||||||||||||||||||| ||| ||||
Sbjct 353 AGGTTTTGAATGCTTTCCCTTACCCGTGGT-TAACTTCGACGCTCTCTCTTGCTTGTGGC 411
Query 561 TCTTTGATGACGCTTGTCTCTTGGGTCACTGGAGTTGTAGAAGCTCTTAAAACCAATCTT 620
|||||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 412 TCTTTGATGATGCTTGTCTCTTGGGTCACTGGAGTTGCAGAAGCTCCTAAAACCGATCTC 471
Query 621 GATTTCTAGAAAACTCTGTTCCTGGT 646
||||||| |||||||||||||| |||
Sbjct 472 GATTTCTGGAAAACTCTGTTCCCGGT 497
Score = 287 bits (155), Expect = 2e-76
Identities = 202/225 (90%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 1200 GGTGGGTAATGGCACAAAGTGTGTTCTACCATTTGTATAATCAAGTCTCATACATGTCCC 1259
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 GGTGGGTAGTGGCACAGAGTGTGTTCTACCATTTGTATAATCAAGTCTCATACATGTCCC 1003
Query 1260 TCGACCAGATTTCACCACTAACATTTAGCGTTGGAAACAAAATGAAGTGGATCTCGGTCA 1319
|| |||||||||| ||||| ||||||||||||||||||| ||||||| ||||||| ||||
Sbjct 1004 TCAACCAGATTTCGCCACTCACATTTAGCGTTGGAAACACAATGAAGCGGATCTCAGTCA 1063
Query 1320 TCGTTTCCTCAATCATCATCTTTCAAAAAC-ATGTTAAACCTGTCAATGCCCTAAGTGTT 1378
|||| |||||||||||||||| ||||| | | |||||||||||||||||||| ||| |
Sbjct 1064 TCGTCGCCTCAATCATCATCTTCCAAAACCCA-GTTAAACCTGTCAATGCCCTTGGTGCT 1122
Query 1379 GCCATTGCAATTCTTGGGACTTTAACCTTTTCTTAGGTAAAAAAT 1423
|||||||| |||||||| ||||| | || |||| |||||||||||
Sbjct 1123 GCCATTGCGATTCTTGGAACTTTCATCTATTCTCAGGTAAAAAAT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5