BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28280.1
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923351 jgi|Araly1|923351|scaffold_104632.1 316 3e-85
Ahg923354 jgi|Araly1|923354|scaffold_104635.1 292 6e-78
Ahg470048 jgi|Araly1|470048|fgenesh2_kg.1__2__AT1G02190.2 292 6e-78
Ahg925596 jgi|Araly1|925596|scaffold_201157.1 244 2e-63
Ahg923356 jgi|Araly1|923356|scaffold_104637.1 124 2e-27
> Ahg923351 jgi|Araly1|923351|scaffold_104632.1
Length=295
Score = 316 bits (171), Expect = 3e-85
Identities = 223/246 (91%), Gaps = 11/246 (4%)
Strand=Plus/Plus
Query 1 ATGGCGTCGAGGCCGGGAGTTCTGACGGAATGGCCATGGAGTCCCCTTGGTGGCTTCAAG 60
|||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 21 ATGGCGTCAAGGTCGGGAGTTCTGACGGAATGGCCATGGAGTCCCCTTGGTGGTTTCAAG 80
Query 61 T---TCTTGGTTGCCCCGTTGGCGATTGCAAGCATACATTCATACGTGACAGCTGAGGAG 117
| ||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 81 TACCTCTTGGTGGCCCCGTTGAAGATGGCAAGCATACATTCGTACGTGACAGCTGAGGAG 140
Query 118 GAGGAGAAGGACCTATG-GAGACTAATGATAGTGGCGATGATGCTGTGGAGAATATTCAC 176
||||||||||||||| | |||||| |||||||||||| |||||||||||| | | | |||
Sbjct 141 GAGGAGAAGGACCTA-GCGAGACTGATGATAGTGGCGCTGATGCTGTGGATAGT-T-CAC 197
Query 177 AGCCAGATATGGATCAGTGTGTCGCGTCA--CA-A-GACGGCCAAGGGAAGGAAGAAGAT 232
||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 198 AGCCAGATATGGATCAGTGTGTCGCGTCATACACAAGACGGCCAAGGGAAGGAAGAAGAT 257
Query 233 CGTGGA 238
||||||
Sbjct 258 CGTGGA 263
> Ahg923354 jgi|Araly1|923354|scaffold_104635.1
Length=653
Score = 292 bits (158), Expect = 6e-78
Identities = 250/290 (86%), Gaps = 23/290 (8%)
Strand=Plus/Plus
Query 263 GTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCAATCTTGGGACGACCAAATC 322
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 198 GTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGGGC---CTTGGGACGACCAAATC 254
Query 323 ATCTTCAACACGCTCTTCATGTATCTCGTCAACAACAAACTCCCAGGCTGCTCGCGTATC 382
|||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||
Sbjct 255 ATCTTCAACACGCTCTTCATGTTTCTTGTCAACAACAAACTCTCAGGCTGCTCCCGTATC 314
Query 383 CCTCCCA--AG-C----C--A-CCAT-C--ATGTGCTTCTTTTCTA--CTTCATGCTGTT 427
|||| | || | | | |||| | ||| | | | | ||| |||||||||| |
Sbjct 315 CCTCTCTGGAGACTAGACGGAGCCATTCTCATGAG-T-CATGACTATACTTCATGCTGGT 372
Query 428 CCCGTCGAGTTCTTATACTACTGGTTCCACAGATCTCTCCACCACCACTTCCT---CTAC 484
|||||| ||||||||||||| |||||||||||| |||||||||| |||||||| ||||
Sbjct 373 CCCGTCCAGTTCTTATACTAGTGGTTCCACAGAGCTCTCCACCAGCACTTCCTGATCTAC 432
Query 485 TCTCGTTACCATTCTCACCACCACTCCTCCATCGTCACCGAGCCCATCAC 534
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TCTCGCTACCATTCTCACCACCACTCCTCCATCGTCACCGAGCCCATCAC 482
Score = 202 bits (109), Expect = 1e-50
Identities = 128/137 (93%), Gaps = 1/137 (1%)
Strand=Plus/Plus
Query 602 ATCA-AAATTGGCAGCTGTGGTGCACCCCTTCGCCGAGCACATCGCCTACTCAGTACTCT 660
|||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 478 ATCACAACTTGGCAGCTGTGGTGCACCCCTTCGCCGAGCACATCGCCTACTCACTACTTT 537
Query 661 TCGCCATACCCATAGTAACGGTGTCCCTATGTGGGATCCTCTCCATTGTTCCCTTCGTTG 720
||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 538 TCGCCATACTTATAGTAACGGCGTCCCTGTGTGGGATCCTCTCCATTGTTACCTTCGTTG 597
Query 721 CATACGTTACTTACATT 737
|||||||||||||||||
Sbjct 598 CATACGTTACTTACATT 614
Score = 196 bits (106), Expect = 5e-49
Identities = 139/154 (90%), Gaps = 5/154 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTCGAGGCCGGGAGTTCTGACGGAATGGCCATGGAGTCCCCTTGGTGGCTTCAAG 60
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCGTCAAGGTCGGGAGTTCTAACGGAATGGCCATGGAGTCCCCTTGGTGGCTTCAAG 80
Query 61 T---TCTTGGTTGCCCCGTTGGCGATTGCAAGCATACATTCATACGTGACAGCTGAGGAG 117
| ||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 81 TACCTCTTGGTGGCCCCGTTGAAGATGGCAAGCATACATTCGTACGTGACAGCTGAGGAG 140
Query 118 GAGGAGAAGGACCTATG-GAGACTAATGATAGTG 150
||||||||||| ||| | |||||| |||||||||
Sbjct 141 GAGGAGAAGGAGCTA-GCGAGACTGATGATAGTG 173
Score = 56.5 bits (30), Expect = 8e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 209 GACGGCCAAGGGAAGGAAGAAGATCGTGGA 238
||||||||||||||||||||||||||||||
Sbjct 173 GACGGCCAAGGGAAGGAAGAAGATCGTGGA 202
> Ahg470048 jgi|Araly1|470048|fgenesh2_kg.1__2__AT1G02190.2
Length=2131
Score = 292 bits (158), Expect = 6e-78
Identities = 202/223 (91%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 616 CTGTGGTGCACCCCTTCGCCGAGCACATCGCCTACTCAGTACTCTTCGCCATACCCATAG 675
|||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
Sbjct 569 CTGTGGTGCACCCCTTCGCCGAACACATCGCCTACTCACTACTCTTTGCCATACCCATGG 628
Query 676 TAACGGTGTCCCTATGTGGGATCCTCTCCATTGTTCCCTTCGTTGCATACGTTACTTACA 735
|||||| |||||| ||||||||||||||||||||| || || |||||||| |||||||||
Sbjct 629 TAACGGCGTCCCTGTGTGGGATCCTCTCCATTGTTTCCATCATTGCATACATTACTTACA 688
Query 736 TTGACTTCATGAACTATATGGGACACTACAACTTCGAGTTTTTCCCTAAGCGTCTCTTTC 795
|||||||||||||| | |||||||| | ||||||||| ||||||||||||||||||| |
Sbjct 689 TTGACTTCATGAACAACATGGGACATTGTAACTTCGAGGTTTTCCCTAAGCGTCTCTTCC 748
Query 796 A--TCATTCCCTCTCCTCAAGTTCCTCTGCTACACCCCCTCGT 836
| || ||||||| |||||||||||||||||||||||||||||
Sbjct 749 ACCTC-TTCCCTCCCCTCAAGTTCCTCTGCTACACCCCCTCGT 790
Score = 202 bits (109), Expect = 1e-50
Identities = 215/263 (82%), Gaps = 20/263 (8%)
Strand=Plus/Plus
Query 263 GTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCAATCTTGGGACGACCAAATC 322
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 316 GTGTACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCGCTCTTGGGACGACCAAATC 375
Query 323 ATCTTCAACACGCTCTTCATGTATCTCGTCAA-CAACAAACTCCCAGGCTGC-TCGCGTA 380
||||||||||| ||| |||||||||||| ||| || ||| ||||||||| || || |
Sbjct 376 ATCTTCAACACTCTCCTCATGTATCTCG-CAAACATCAAGCTCCCAGGC-GCCTCCCACC 433
Query 381 T-CCCTCCCAAGCCACCATCATGT-GCTTCTTTTCTACTTCATG-CTGTTC--C-CG-TC 433
| ||| ||| | || | ||| || | | | || |||| || | | | || |
Sbjct 434 TTCCC-CCCTGGAGACTAG-ATGGAGC--CAT--C--CT-CATGGCTCTACTTCACGCTG 484
Query 434 GAGTTCTTATACTACTGGTTCCACAGATCTCTCCACCACCACTTCCTCTACTCTCGTTAC 493
|||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 485 GAGTTCCTCTACTACTGGTTCCACAGAGCTCTCCACCACCATTTCCTCTACTCTCGCTAC 544
Query 494 CATTCTCACCACCACTCCTCCAT 516
|||||||||||||| ||||||||
Sbjct 545 CATTCTCACCACCATTCCTCCAT 567
> Ahg925596 jgi|Araly1|925596|scaffold_201157.1
Length=215
Score = 244 bits (132), Expect = 2e-63
Identities = 173/192 (90%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTCGAGGCCGGGAGTTCTGACGGAATGGCCATGGAGTCCCCTTGGTGGCTTCAAG 60
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 25 ATGGCGTCTAGGCCGGGAGTTCTCACGGAATGGCCATGGAGTCCCCTTGGTGGCTACAAG 84
Query 61 T---TCTTGGTTGCCCCGTTGGCGATTGCAAGCATACATTCATACGTGACAGCTGAGGAG 117
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 85 TACCTCTTGGTTGCCCCGTTGGCGATGGCAAGCATACATTCGTACGTGACAGCTGAGGAG 144
Query 118 GAGGAGAAGGACCTATG-GAGACTAATGATAGTGGCGATGATGCTGTGGAGAATA-TTCA 175
|||||||||||| || | |||||| ||||| | ||| ||| ||||||| ||||| ||||
Sbjct 145 GAGGAGAAGGACTTA-GCGAGACTGTTGATAATAGCGCTGACGCTGTGGCGAATAGTTCA 203
Query 176 CAGCCAGATATG 187
||||||||||||
Sbjct 204 CAGCCAGATATG 215
> Ahg923356 jgi|Araly1|923356|scaffold_104637.1
Length=373
Score = 124 bits (67), Expect = 2e-27
Identities = 84/92 (91%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 1594 TCCATCA-ACAAAATCATAGATGCAGCTATCCTTGAAGCAGATGAACAGGGTGTGAGAGT 1652
|||| || ||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 53 TCCACCACACAAAATCATAGAGGTAGCTATCCTTGAAGCAGATGAAAAGGGTGTGAGAGT 112
Query 1653 AATGAGTCTTGGCCTGATGAACAATGT-AAGG 1683
||||||||||||||||||||| ||| | ||||
Sbjct 113 AATGAGTCTTGGCCTGATGAATAATCTGAAGG 144
Score = 60.2 bits (32), Expect = 6e-08
Identities = 39/42 (93%), Gaps = 1/42 (2%)
Strand=Plus/Plus
Query 898 TGGCATCAAAATATGTTGAAGGTTCCACTCGCTCCATCACAC 939
|||| || |||||||||||||||||||||||||||| |||||
Sbjct 22 TGGCGTC-AAATATGTTGAAGGTTCCACTCGCTCCACCACAC 62
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85360239045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5