BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28285.1
Length=3730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924232 jgi|Araly1|924232|scaffold_105513.1 311 3e-83
Ahg890982 jgi|Araly1|890982|Al_scaffold_0007_2968 291 3e-77
> Ahg924232 jgi|Araly1|924232|scaffold_105513.1
Length=402
Score = 311 bits (168), Expect = 3e-83
Identities = 194/207 (94%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 2215 tttttgtttgtcaattatAGATGCGTCCAACAATAACCATTAGCGGTCGTTTTTATGGAC 2274
||||||||||||||||||||||| | ||| |||||| |||| |||||||||| |||||||
Sbjct 1 TTTTTGTTTGTCAATTATAGATGAGCCCACCAATAAACATTGGCGGTCGTTTATATGGAC 60
Query 2275 AAGGATCGAGTTCTCAAGCTGCTGGTTATGAAAGACCTTTGTCTCAAACTGCAAACGTTG 2334
||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||| ||
Sbjct 61 AAGGATCGAGTTCTCAAGCTGTTGGTTCTCAAAGACATTTGTCTCAAACTGCAAACGCTG 120
Query 2335 AATCAAGTGAGCAGAGAGAAGAAATTGCACATGTGCAATATGATATTCGAGTGCTTCACC 2394
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 AATCAAGTGAGCAGGGAGAAGAAATTGCACCTGTGCAATATGATATTCGAGTGCTTCACC 180
Query 2395 CCTCTCGAAGAAATGGAGCTAAATGGT 2421
|||||||||||||||||||||||||||
Sbjct 181 CCTCTCGAAGAAATGGAGCTAAATGGT 207
Score = 215 bits (116), Expect = 2e-54
Identities = 125/129 (97%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 2502 GGTTCAAAAACAACACCGAAGTATCAACGCGTGTTAGAAAAATCATTGAAGGGTGTTTTT 2561
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 205 GGTTCAAAAACAACACCGAAGTGTCAACGCGTGTTAGAAAAATCATTGAAGGGTGTTTTC 264
Query 2562 AGGGACCTTGGTATAGCTGGAGAAAA-GTGCCGCAATTTTATAGAGATGCATGGTTTACA 2620
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 265 AGGGACCTTGGTATAGCTGGA-AAAATGTGCCGCAATTTTATAGAGATGCATGGTTTACA 323
Query 2621 ACGTTTAAG 2629
|||||||||
Sbjct 324 ACGTTTAAG 332
Score = 128 bits (69), Expect = 3e-28
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2695 AGATATATTTTAGACAAGGTTTGAGTGGGATGCCTCGATTGAGCATCTAGTTAAAGCCAA 2754
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 331 AGATATATTTTAGACAAGGTTTGAGTTGGATGCCTCGATTGAGCATCTAGTTAAAGCCAA 390
Query 2755 CTTTGATGCCCT 2766
||||||||||||
Sbjct 391 CTTTGATGCCCT 402
> Ahg890982 jgi|Araly1|890982|Al_scaffold_0007_2968
Length=321
Score = 291 bits (157), Expect = 3e-77
Identities = 177/187 (95%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 2235 ATGCGTCCAACAATAACCATTAGCGGTCGTTTTTATGGACAAGGATCGAGTTCTCAAGCT 2294
||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 25 ATGCGTCCACCAATAAACATTGGCGGTCGTTTATATGGACAAGGATCGAGTTCTCAAGCT 84
Query 2295 GCTGGTTATGAAAGACCTTTGTCTCAAACTGCAAACGTTGAATCAAGTGAGCAGAGAGAA 2354
| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 85 GTTGGTTCTCAAAGACCTTTGTCTCAAACTGCAAACGCTGAATCAAGTGAGCAGAGAGAA 144
Query 2355 GAAATTGCACATGTGCAATATGATATTCGAGTGCTTCACCCCTCTCGAAGAAATGGAGCT 2414
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 145 GAAATTGCACCTGTGCAATATGATATTCGAGTGCTTCACCCCTCTAGAAGAAATGGAGCT 204
Query 2415 AAATGGT 2421
|||||||
Sbjct 205 AAATGGT 211
Score = 185 bits (100), Expect = 2e-45
Identities = 108/112 (96%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 2502 GGTTCAAAAACAACACCGAAGTATCAACGCGTGTTAGAAAAATCATTGAAGGGTGTTTTT 2561
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 209 GGTTCAAAAACAACACCGAAGTGTCAACGCGTGTTAGAAAAATCATTGAAGAGTGTTTTC 268
Query 2562 AGGGACCTTGGTATAGCTGGAGAAAAGTGCCGCAATTTTATAGAGATGCATG 2613
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 269 AGGGACCTTGGTATAGCTGGAAAAAAGTGCCGCAATTTTATAGAGATGCATG 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140927192819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5