BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28288.1
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327008 jgi|Araly1|327008|fgenesh1_pm.C_scaffold_6002228 361 2e-99
> Ahg327008 jgi|Araly1|327008|fgenesh1_pm.C_scaffold_6002228
Length=255
Score = 361 bits (195), Expect = 2e-99
Identities = 236/256 (92%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 1 ATGGATATCACAAAGAACATCGTGACTTTACTTCTTGTAGTATTGTTTCCAATTTTGTTT 60
|||||||||| ||||| |||| ||||||| ||||||||||| ||||| |||||| ||||
Sbjct 1 ATGGATATCATAAAGAGCATCATGACTTTTTTTCTTGTAGTAATGTTTTCAATTTCGTTT 60
Query 61 TATTACAACAATGTTTTGGCATTTCCGGCGAGCGATCAATCGATATATGCTCGTTGCATT 120
||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 61 TATAACAACAATGTTTTGGCATTTCCGGCGGGCGACCAATCGATATATGCTCGTTGCATT 120
Query 121 GGTCCATGTCCGAGGTATGCCGTGCCTCATTGGTGTGAAAATGAATGTTT-GTCTAGGAA 179
||||||||||||||||||||||| |||||||||||||| || ||||||| | ||||||
Sbjct 121 GGTCCATGTCCGAGGTATGCCGTATCTCATTGGTGTGAATATCAATGTTTAG-ATAGGAA 179
Query 180 GTACATGGCAGGAGGAGAATGTGCTTTTATTGAAGGAGAAGGACCAACACCACGGTGTTG 239
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 180 GTACATGGCAGGAGGAGAATGTGCTTTTATTGAAGGAGAAGGACCAGCACCACGATGTTG 239
Query 240 TTGCATTAACTTATGA 255
||||||||||||||||
Sbjct 240 TTGCATTAACTTATGA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8859676552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5