BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28290.1
Length=2149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489646 jgi|Araly1|489646|fgenesh2_kg.6__2780__AT5G28290.1 3354 0.0
Ahg477750 jgi|Araly1|477750|fgenesh2_kg.3__451__AT3G04810.2 918 0.0
> Ahg489646 jgi|Araly1|489646|fgenesh2_kg.6__2780__AT5G28290.1
Length=2136
Score = 3354 bits (1816), Expect = 0.0
Identities = 2041/2148 (95%), Gaps = 21/2148 (1%)
Strand=Plus/Plus
Query 1 AAACTCTGTCGTTTTCCTCAGTC--agagagacacagagagagaaagagagaagaagaag 58
||||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||
Sbjct 1 AAACTCTGTCGTTTTCCTCAGTCAGAGAGAGACACAGAGAGAG-AA-AGAGAAG-AGAAG 57
Query 59 CACCTCTCATGGCGAACCAGCTTCTTCACCATCTTCCGATTCCTTTTCCTCTCCACCGTC 118
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 58 CACCTCTCATGGCGAACCAGCTTCTTCACCATCTTCCGATTCCATTTCCTCTCCACCGTC 117
Query 119 ACTTCTACCTCCTAAACGCCGCCGTTTTATAGCTTCTCCTCCCGAAAATGCTAAACCCAC 178
|||||||||||| ||||||| ||||||||||||||||||| | |||||||| ||||||||
Sbjct 118 ACTTCTACCTCCAAAACGCCACCGTTTTATAGCTTCTCCT-CGGAAAATGCCAAACCCAC 176
Query 179 ATTCCTCAAATCTCTCACCGACGCTTTTTTAGATTCTTGTAGAGGAAGAGAATA-TTT-T 236
|||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |
Sbjct 177 ATTCCTCAAATCTCTCACCGACGCTTTTTTAGATTCTTATAGAGGAAGATAATATTTTCT 236
Query 237 TAAGGAGGTTGTTTTCGATGGAGCATTACGAGGTTCTTGAGCAAATTGGGAAAGGTTCTT 296
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TAAGGAGATTGTTTTCAATGGAGCATTACGAGGTTCTTGAGCAAATTGGGAAAGGTTCTT 296
Query 297 TTGGGTCAGCTCTTCTTGTGAGGCATAAACATGAGAAGAAACTTTATGTTTTGAAGAAAA 356
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 TTGGGTCAGCTCTTCTTGTGAGGCATAAGCATGAGAAGAAACTTTATGTTTTGAAGAAAA 356
Query 357 TTCGGTTAGCTAGGCAGACTGGTAGAACAAGAAGGTCTGCTCATCAAGAGATGGAATTGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTCGGTTAGCTAGGCAGACTGGTAGAACAAGAAGGTCTGCTCATCAAGAGATGGAATTGA 416
Query 417 TCTCAAAGATAAGGAATCCATTTATTGTGGAATATAAAGATTCTTGGGTTGAGAAAGGTT 476
||||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 417 TCTCAAAGATACGAAATCCATTTATCGTGGAATATAAAGATTCTTGGGTTGAAAAAGGGT 476
Query 477 GCTATGTGTGCATTGTCATAGGCTATTGCAAAGGCGGTGACATGGCCGAAGCAATAAAGA 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCTATGTGTGCATTATCATAGGCTATTGCAAAGGCGGTGACATGGCCGAAGCAATAAAGA 536
Query 537 AAGCCAACGGCGTAGAGTTCTCTGAAGAGAAACTCTGCAAGTGGCTGGTACAACTCTTAA 596
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 537 AAGCCAACGGCGTAGAATTCTCTGAAGAGAAACTCTGCAAATGGCTGGTACAACTCTTAA 596
Query 597 TGGCTCTTGAATACTTGCACGCCAGTCACATTCTCCATCGCGATGTCAAGTGTTCAAACA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGGCTCTTGAATACTTGCACGCCAGTCACATTCTCCATCGCGATGTCAAGTGTTCAAACA 656
Query 657 TATTCTTGAC-AAAGGATCAAGATATACGCCTAGGTGATTTCGGACTTGCGAAGATCTTG 715
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 657 TATTCTTGACGAAA-GATCAAGATATACGCCTAGGTGATTTCGGACTTGCCAAGATCTTG 715
Query 716 ACATCTGATGACCTTGCTTCTTCAGTGGTTGGAACGCCGAGCTACATGTGCCCTGAGCTT 775
||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 716 ACATCAGACGACCTTGCTTCTTCAGTGGTTGGAACACCAAGCTACATGTGCCCTGAGCTT 775
Query 776 CTTGCTGATATTCCCTACGGGTCAAAGTCGGACATTTGGTCGCTGGGTTGTTGTATGTAT 835
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 776 CTTGCTGATATTCCCTACGGATCAAAGTCGGATATTTGGTCGCTGGGGTGTTGTATGTAT 835
Query 836 GAGATGACGGCGCTGAAACCGGCATTCAAAGCCTTTGACATGCAAGGTCTGATCAACAGG 895
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 GAGATGACGGCTCTGAAACCGGCATTCAAAGCCTTTGACATGCAAGGGCTGATCAACAGG 895
Query 896 ATAAACCGGTCCATCGTTGCTCCACTTCCTGCGCAATATTCTACCGCCTTTCGCAGTCTC 955
|||||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 896 ATAAACCGATCAATCGTTGCTCCACTTCCTGCACAATATTCTACTGCCTTTCGAAGTCTG 955
Query 956 GTTAAAAGCATGCTCAGGAAGAATCCAGAACTCAGACCAAGCGCTTCTGATCTTCTCAGA 1015
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 956 GTTAAAAGCATGCTCAGGAAGAATCCAGAACTCAGACCAAGCGCCTCTGATCTTCTCAGA 1015
Query 1016 CAGCCACTACTTCAGCCCTACGTTCAAAAGGTTCTTCTCAAGCTGAGCTTCCGGGAACAC 1075
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CAGCCACTGCTTCAGCCCTACGTTCAAAAGGTTCTTCTCAAGCTGAGCTTCCGGGAACAC 1075
Query 1076 GATACATTGCCATCTGAATCCGAAAGGAGAAGTAGCTATCCTCAGCAGAGAAAGCGTACT 1135
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 1076 GATACATTGCCATCTGAATCCGAAAGGAGAAGAAGCTATCCTGAGCAGAGAAGGCGTACT 1135
Query 1136 TCTGGCAAAAGTGTGAGCTTCGGTCCAAGCAGGTTCGGTGTTGACCAAGAAGATTCTGTT 1195
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 1136 TCTGGCAAAAGTGTGAGCTTCGGTCCAAGCAAGTTTGGTGTTGACCAGGAAGATTCTGTT 1195
Query 1196 TCTTCTGTTAAACCCGTGCACACGTATTTACACCGTCACAGGCCAGTGGATTTGTCTGCA 1255
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1196 TCTTCTGTTAAACCCGTTCACACGTATTTACACCGGCACAGGCCAGTGGATTTGTCTGCC 1255
Query 1256 AATGACACTAGTAGAGTGGTTGTTCGTAGACCCGCTGTTTCTTCAGTGGTTTCTAACAGT 1315
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1256 AATGACACTAGTAGAGTGGTTGTTCGTAGACCCGCTGTTTCGTCAGGGGTTTCTAACAGT 1315
Query 1316 TCAAAATATGTGCCAGTGAGATCAAACCAGCCTAAGAGTGGTGGTCTGCTGAAACCTGCG 1375
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1316 TCAAAATATGTGCCAGTAAGATCAAACCAGCCTAAGAGTGGTGG--T-CTGAAACCTGCG 1372
Query 1376 GTAGTGACTCGTAGGGCCTCCTTACCTATCTCACAGAAACCTGCAAAAGGAACAAAAGAC 1435
| | || ||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 1373 GCGGCGATTCGTAGGGCATCCTTGCCTGTCTCACATAAACCTGCAAAAGGAACAAAAGAC 1432
Query 1436 TCTCTATACCACCCGAACATCGGTATACTCCATCAGCTAAATTCTCCAGATGTGTCAGTA 1495
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 ACTCTATACCACCCGAATATCGGTATACTCCATCAGCTAAATTCTCCAGATGTGTCAGTA 1492
Query 1496 AACTCGCCAAGAATCGACAGGATCAAGTTCCCGTTAGCTTCATATGAAGAAATGCCTTTC 1555
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1493 AACTCTCCAAGAATCGACAGGATCAAATTCCCGTTAGCTTCATATGAAGAAATGCCTTTC 1552
Query 1556 ATTCCCGTTGTTCGCAAGAAGAAAGGATCGTCCAGAGGATCATACAGCCCGCCTCCAGAG 1615
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 ATTCCCGTTGTGCGTAAGAAGAAAGGATCGTCCAGAGGATCATACAGCCCGCCTCCAGAG 1612
Query 1616 CCACCACTAGACTGCTCAATAACAAAAGACAAATTCACACTTGAACCAGAACGAGAAACC 1675
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1613 CCACCACTAGACTGCTCTATCACAAAAGACAAATTCACACTTGAACCAGAACGAGAAACC 1672
Query 1676 AAAAGTGATTTGTCTGATCAAAATGCAACTGCTGGAGCATCAAGTAGAGCTTCCTCAGGT 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AAAAGTGATTTGTCTGATCAAAATGCAACTGCTGGAGCATCAAGTAGAGCTTCCTCAGGT 1732
Query 1736 GCATCAAGAAGACAAAGATTCGACCCTAGCTCATATCGACAACGAGCTGAGGCACTTGAA 1795
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 GCATCAGGGAGACAAAGATTCGACCCTAGCTCATATCGACAACGAGCTGAGGCACTTGAA 1792
Query 1796 GGACTACTTGAATTCAGTGCAAGATTACTTATAGACGAGAGGTACGATGAGCTGAACGTG 1855
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1793 GGACTACTTGAATTCAGTGCAAGATTACTTATAGACGAGAGGTATGATGAGCTGAACGTG 1852
Query 1856 TTACTAAAACCATTTGGTCCGGGAAAGGTATCGCCAAGAGAAACCGCGATATGGTTGTCT 1915
||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 1853 TTACTGAAACCGTTTGGTCCAGGAAAAGTATCGCCCCGAGAAACCGCGATATGGTTGTCT 1912
Query 1916 AAAAGCTTCAAGGAAAGTAGTCCTAGTAACTTGGAAGAAGATTGAAAAACAGGGTTTTAA 1975
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 1913 AAAAGCTTCAAGGAAACTAGTCCTAGTAACCTGGAAGAAGATTGAGAAACAGGGTTT-AA 1971
Query 1976 CTCC-TT--AAAAGTTTTTGAGAGCATGACGTTTCCACGATTTGATAGATAAATTGTTTG 2032
|||| || ||||||||||||||| |||| | |||||||||| |||||| ||||||||||
Sbjct 1972 CTCCCTTTTAAAAGTTTTTGAGAGAATGATGATTCCACGATTCGATAGA-AAATTGTTTG 2030
Query 2033 ACTCTTAGGCTGTGTTCTTTGAAGCTAACTCCTGTATCTGATACAATGAGACCAAAATAT 2092
|| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct 2031 ACACTTAGGCTGTGTTCTTTGAAGCTAACCCCTGTATCCGATACAATGATACCAAAATAT 2090
Query 2093 ACAGCTTTCTATTCTCTATGTAATCCTTTATTC-AGTCTGAAACAAAA 2139
|||||||||| ||||||||||||||||| |||| |||| |||| ||||
Sbjct 2091 ACAGCTTTCTGTTCTCTATGTAATCCTT-ATTCCAGTCAGAAA-AAAA 2136
> Ahg477750 jgi|Araly1|477750|fgenesh2_kg.3__451__AT3G04810.2
Length=2294
Score = 918 bits (497), Expect = 0.0
Identities = 825/980 (84%), Gaps = 36/980 (4%)
Strand=Plus/Plus
Query 247 GTTT-TCGATGGAGCATTACGAGGTTCTTGAGCAAATTGGGAAAGGTTCTTTTGGGTCAG 305
|||| || |||||| ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 288 GTTTGTCAATGGAGAATTACGAGGTTCTTGAGCAAATTGGAAAAGGTTCCTTTGGGTCAG 347
Query 306 CTCTTCTTGTGAGGCATAAACATGAGAAGAAACTTTATGTTTTGAAGAAAATTCGG-TTA 364
||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 348 CTCTTCTTGTGAGACATAAACATGAGAAGAAACTATATGTTTTGAAGAAAATCCGGCTT- 406
Query 365 GCTAGGCAGACTGGTAGAACAAGAAGGTCTGCTCATCAAGAGATGGAATTGATCTCAAAG 424
||| ||||||||||||| || ||||| |||||||||||||||||||| ||||| ||||||
Sbjct 407 GCTCGGCAGACTGGTAGGACTAGAAGATCTGCTCATCAAGAGATGGAGTTGATTTCAAAG 466
Query 425 ATA-AGGAATCCATTTATTGTGGAATATAAAGATTCTTGGGTTGAGAAAGGT-TGCTATG 482
||| | |||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 467 ATACA-TAATCCATTCATTGTGGAATATAAAGATTCTTGGGTTGA-AAAGGGATGCTATG 524
Query 483 TGTGCATTGTCATAGGCTATTGCAAAGGCGGTGACATGGCCGAAGCAATAAAGAAAGCCA 542
|||||||| ||||||||||||||||||| || |||||||| ||||| ||||||||| |||
Sbjct 525 TGTGCATTATCATAGGCTATTGCAAAGGAGGAGACATGGCGGAAGCGATAAAGAAAACCA 584
Query 543 ACGGCGTAGAGTTCTCTGAAGAGAAACTCTGCAAGTGGCTGGTACAACTCTTAATGGCTC 602
| |||||| | ||| ||||||||||||||||||| ||||| | | |||||||||||||
Sbjct 585 ATGGCGTACACTTCACTGAAGAGAAACTCTGCAAATGGCTTTTTTAGCTCTTAATGGCTC 644
Query 603 TTGAATACTTGCACGCCAGTCACATTCTCCATCGCGATGTCAAGTGTTCAAACATATTCT 662
||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| |
Sbjct 645 TTGAATACTTGCATGCCAATCACATTCTCCATCGCGATGTCAAGTGTTCCAACATATTTT 704
Query 663 TGACAAAGGATCAAGATATACGCCTAGGTGATTTCGGACTTGCGAA-GATCTTGACATCT 721
||||||||||||| ||||||||||| || ||||| |||||||| || | |||| |||||
Sbjct 705 TGACAAAGGATCAGGATATACGCCTTGGCGATTTTGGACTTGCCAAAG-TCTTAACATCA 763
Query 722 GATGACCTTGCTTCTTCAGTGGTTGGAACGCCGAGCTACATGTGCCCTGAGCTTCTTGCT 781
|||||||| || ||||||||||||||||| || |||||||||||||| ||||| || ||
Sbjct 764 GATGACCTCGCGTCTTCAGTGGTTGGAACACCAAGCTACATGTGCCCCGAGCTACTAGCC 823
Query 782 GATATTCCCTACGGGTCAAAGTCGGACATTTGGTCGCTGGGTTGTTGTATGTATGAGATG 841
||||| ||||| ||||| ||||| || ||||||||||| || ||||||||||||||||||
Sbjct 824 GATATACCCTATGGGTCCAAGTCTGATATTTGGTCGCTTGGATGTTGTATGTATGAGATG 883
Query 842 ACGGCGCTGAAACCGGCATTCAAAGCCTTTGACATGCAAGGTCTGATCAACAGGATAAAC 901
||||| |||||||| || |||||||| |||||||||||||| || || |||||||| |||
Sbjct 884 ACGGCTCTGAAACCTGCTTTCAAAGCTTTTGACATGCAAGGACTAATAAACAGGATTAAC 943
Query 902 CGGTCCATCGTTGCTCCACTTCCTGCGCAATATTCTACCGCCTTTCGCAG-TCTCGTTAA 960
| || |||||| | |||||||| |||||||||||| | ||||| || || ||| || ||
Sbjct 944 AGATCAATCGTTCCCCCACTTCCGGCGCAATATTCTGCTGCCTTCCG-AGGTCTGGTCAA 1002
Query 961 AAGCATGCTCAGGAAGAATCCAGAACTCAGACCAAGCGCTTCTGATCTTCTCAGACAGCC 1020
||| |||||| |||| ||||||||||| |||||||| ||| |||| ||||| ||||| ||
Sbjct 1003 AAGTATGCTCCGGAAAAATCCAGAACTTAGACCAAGTGCTGCTGAGCTTCTTAGACAACC 1062
Query 1021 ACTACTTCAGCCCTACGTTCAAAAGGTTC-TTCTCAA-GCTGA--GCTTCCGGGAAC-AC 1075
|| ||||| || || | || ||| ||| || | || | ||| | | || |||| |
Sbjct 1063 GCTGCTTCAACCTTATATCCAGAAGATTCATT-TGAAAG-TGAATGAT-CCAGGAAGTAA 1119
Query 1076 -GA-T-ACAT------TG-CCA---TCTGAATCCGAAAGGAGAAGTAGCTATCCTCAGCA 1122
| | |||| || ||| |||||||||| ||||||| |||| ||| ||||
Sbjct 1120 TGTGTTACATGCCCAATGGCCAGAATCTGAATCCGCCAGGAGAAACAGCTTTCCAGAGCA 1179
Query 1123 GAGAAAGCGTACTTCTGGCAAAAGTG-TGAGCTTCGGTCCAAGCAGGTTC-GGTGTTGAC 1180
||||| |||| || |||||||||| | ||||| || ||||||||||| || || ||
Sbjct 1180 GAGAAGGCGTCCTGCTGGCAAAAGCCAT-AGCTTTGGCCCAAGCAGGTTTAGGGGTA-AC 1237
Query 1181 CAAGAAGATTCTGTTTCTTC 1200
|| |||||||||||||||||
Sbjct 1238 CAGGAAGATTCTGTTTCTTC 1257
Score = 200 bits (108), Expect = 3e-50
Identities = 236/296 (80%), Gaps = 16/296 (5%)
Strand=Plus/Plus
Query 1380 TGACTCGTAGGGCCTCCTTACCTATCTCACAG-AAACCTGCAAAAGGAA-CAAAAGACTC 1437
||| |||||| |||||| | |||| |||| || ||||||||||||| || | ||||||||
Sbjct 1485 TGATTCGTAGAGCCTCCATGCCTAGCTCA-AGAAAACCTGCAAAAGAAATC-AAAGACTC 1542
Query 1438 TCTATACCA-CCCGAACATCGGTATACTCCATCAGCTAAATTCTCCAGATGTGTCAGTAA 1496
||| || || |||| | | || | ||||| ||| |||||||||| ||||||||| | |
Sbjct 1543 TCTGTA-CATTTCGAAAACCAGTTTTCTCCACCAGATAAATTCTCCTGATGTGTCAATGA 1601
Query 1497 ACTCGCCAAGAATCGACAGGATCAAGTTCCCGTTAGCTTCATATGAAGAA-ATGCCTTTC 1555
|| | |||||||| |||| ||| |||| ||| |||| ||||| || ||| | ||||||
Sbjct 1602 ACGCACCAAGAATTGACAAGATTGAGTTTCCGCTAGCGTCATACGAGGAAGA-GCCTTTT 1660
Query 1556 ATTCCCGTTGT---TCG---CAAGAAGAAAG-GATCGTCCAGAGGATCATACAGCCCGCC 1608
|||| ||||| | | |||||||||| | ||||| ||||| || ||||| || ||
Sbjct 1661 GTTCCGGTTGTGCGTGGTAAGAAGAAGAAAGCG-TCGTCTAGAGGTTCCTACAGTCCACC 1719
Query 1609 TCCAGAGCCACCACTAGACTGCTCAATAACAAAAGACAAATTCACACTTGAACCAG 1664
||||||||||||||||||||||||||| |||||||||||||| || |||||| |||
Sbjct 1720 TCCAGAGCCACCACTAGACTGCTCAATCACAAAAGACAAATTTACTCTTGAATCAG 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80865590135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5