BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28460.1
Length=2406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486635 jgi|Araly1|486635|fgenesh2_kg.5__2627__AT3G61520.1 3627 0.0
> Ahg486635 jgi|Araly1|486635|fgenesh2_kg.5__2627__AT3G61520.1
Length=2360
Score = 3627 bits (1964), Expect = 0.0
Identities = 2235/2366 (94%), Gaps = 17/2366 (1%)
Strand=Plus/Plus
Query 29 ATGAGTATCATGCTATCAATTTCCCGGCGCCAGAACTCTTATATTCTGCTCAACCA-TTC 87
||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1 ATGAGTATCGTGCTATCGATTTCCCGGCGCCGGAACTCTTATATTCTGCTCAACCATTTC 60
Query 88 TCGATTCCTCCGGCGTTTTTCTTATGATGTTGACCCACGGCCGGAAATCAAATCGGAGAG 147
||||| |||| ||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 61 -CGATTAATCCGCCGTTTTTCTGATGAAGTTGACCCACGGCCAGAAATCAAATCGGAGAG 119
Query 148 CCAGGAATTTGTAGTAGTCAAATTTGTGAAAACTCTTCAAAATACCCCGCAACATGATTG 207
||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||
Sbjct 120 CCAGGAATTTGTAGTAGTCAAATTTTTGAAAAATCTTCAAAAAACCCCGCAACATGATTG 179
Query 208 GGCGTCGAGCGAGTCGCTAAGTGCGCTTGTCGTATCTTCTTCTTCTGC-TTCTCCTTTAG 266
||||||||| |||||||||||| |||| ||||||||||||||||| | ||||||| |||
Sbjct 180 GGCGTCGAGTGAGTCGCTAAGTTCGCTACTCGTATCTTCTTCTTCT-CATTCTCCTCTAG 238
Query 267 TATTCTCGCAAATCACGCGGCGGCTAGGATCGTATTCTCTAGCAATCTCGTTCTTCGAGT 326
||||||||||||||||||||||||| |||||||| ||| | |||||||| ||||||||||
Sbjct 239 TATTCTCGCAAATCACGCGGCGGCTGGGATCGTACTCTTTGGCAATCTCTTTCTTCGAGT 298
Query 327 ACCTGGA-TGCGAAGTCTCAGTCTCTGAAACGCCGTGAAGAATCTCTCTCCTTGGCGCTT 385
||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACCTGGACT-CGAAATCTCAGTCTCTGAAACGCCGTGAAGAATCTCTCTCCTTGGCGCTT 357
Query 386 CAGTCGGTCATTGAATTCGCCGGTAGTGAACCGGACCCGCGTGATAAACTTCTCCGTCTC 445
|||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 358 CAGTCGGTTATTGAATTCGCCGGTAGTGAACCTGACTCGCGAGATAAACTTCTCCGTCTC 417
Query 446 TACGAGATCGCCAAAGAGAAGAACATTCCTCTTACTATCGTTGCCACTAAGCTTCTGATC 505
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 418 TACGAGATCGCCAAAGAGAAGAACATTCCGCTTACTGTCGTTGCCACTAAGCTTCTGATC 477
Query 506 CGATGGTTTGGGCGTATGGGTATGGTGAATCAGTCGGTTCTTGTATACGAAAGACTCGAT 565
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 478 CGATGGTTTGGGCGTATGGGTATGGTGAATCAGTCGGTTCTTGTATACGAACGACTCGAT 537
Query 566 TCGAATATGAAAAACTCGCAGGTTCGTAATGTTGTGGTAGACGTCTTGCTAAGAAATGGA 625
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 538 TCGAATATGAAAAACTCGCAAGTTCGTAATGTTGTGATCGACGTCTTGCTAAGAAATGGA 597
Query 626 CTTGTGGATGATGCCTTCAAGGTGCTCGACGAAATGCTTCAGAAAGAATCTGTTTTTCCT 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTTGTGGATGATGCCTTCAAGGTGCTCGACGAAATGCTTCAGAAAGAATCTGTTTTTCCT 657
Query 686 CCTAATAGAATCACAGCGGATATTGTGTTACACGAGGTTTGGAAGGAAAGGCTTTTGACA 745
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 658 CCTAATAGAATCACAGCGGATATTGTGCTCCACGAGGTTTGGAAGGGAAGGCTTTTGACA 717
Query 746 GAAGAAAAGATAATTGCTTTGATTTCAAGATTTAGCTCTCATGGTGTCTCCCCAAACTCT 805
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAAGAAAAGATTATTGGGTTGATTTCAAGATTTAGCTCTCATGGTGTCTCCCCAAACTCT 777
Query 806 GTTTGGTTGACTCGGTTTATATCAAGTCTATGCAAAAATGCTCGCGCCAATACTGCTTGG 865
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 778 GTTTGGTTGACTCGGTTTATATCAAGTCTATGCAAAAATGCTCGCACCAATGTTGCTTGG 837
Query 866 GATATTTTGAGCGACCTGATGAAGAACAAAACCCCACTTGAAGCTCCTCCCTTCAATGCG 925
||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 GATATTTTGAGTGACTTGATGAAGAACAAAGCCCCACTTGAAGCTCCTCCCTTCAATGCG 897
Query 926 CTTTTGTCTTGCTTAGGAAGGAATATGGACATTAGTAGAATGAATGATTTAGTCTTGAAG 985
|||||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 898 CTTTTGTCATGCTTAGGAAGGAATATGAACATTGGTAGAATGAATGCTTTAGTCTTGAAG 957
Query 986 ATGGATGAGGTGAAAATCCGGCCTGATGTTGTGACTTTAGGGATTCTTATTAACACTTTA 1045
||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 958 ATGGATGAGATGAAAATTCGGCCTGATGTTGTGACTTTAGGGATTCTTATCAACACTTTG 1017
Query 1046 TGCAAATCAAGAAGGGTAGATGAAGCTCTCGAAGTTTTTGAACAAATGCGTGGAAAGAGA 1105
||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1018 TGCAAATCAAGGAGGGTCGATGAAGCTCTCCAAGTTTTTGAACAAATGTGTGGAAAGAGA 1077
Query 1106 ACTGATGATGGAAATGTGATTAAAGCTGATTCGATTCATTTTAATACTCTCATTGACGGG 1165
||||||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1078 ACTGATGATGGGAATGTTATCAAAGCTGATTCGATTCACTTTAATACTCTCATCGACGGG 1137
Query 1166 CTCTGCAAGGTGGGGAGGTTGAAAGAAGCAGAGGAGTTATTGGTAAGGATGAAACTGGAA 1225
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1138 CTCTGCAAGGTGGGGAGGTTGAAAGAAGCAGAGGAGTTATTGGTAAGGATGAAAATGGAA 1197
Query 1226 GAGAGATGTGTGCCCAATGCAGTTACTTACAATTGCTTGATTGATGGGTATTGCAGAGCT 1285
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 GAGAGATGTGTGCCCAATACAGTTACTTACAATTGCTTGATTGATGGGTATTGCCGAGCT 1257
Query 1286 GGAAAGCTTGAGACGGCTAAAGAAGTCGTTTCTCGGATGAAAGAGGACGAGATTAAACCT 1345
|||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1258 GGAAAGCTTGAGACTGCTAAAGAAGTTGTTTCTCGGATGAAAGAGGACGGGATTAAACCT 1317
Query 1346 AATGTGGTAACTGTTAATACAATCGTTGGTGGGATGTGCAGGCACCATGGATTGAACATG 1405
|||||||| |||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 1318 AATGTGGTTACTGTTAATACAATTGTCGGTGGGATGTGCAGGTACCATGGATTGAACATG 1377
Query 1406 GCGGTTGTTTTCTTTATGGATATGGAAAAGGAAGGCGTGAAAGGGAATGTGGTTACTTAT 1465
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GCGGTTCTTTTCTTTATGGATATGGAAAAGGAAGGCGTGAAAGGGAATGTGGTTACTTAT 1437
Query 1466 ATGACATTGATTCATGCTTGTTGCAGCGTCAGTAATGTAGAGAAGGCTATGTATTGGTAT 1525
||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |
Sbjct 1438 ATGACATTGATTCATGCTTGTTGCAGCGTCAGTAACATAGAAAAGGCTATGCATTGGTTT 1497
Query 1526 GAAAAAATGTTGGAAGCTGGTTGTTCTCCTGATGCAAAGATCTATTATGCTTTGATCTCT 1585
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GATAAAATGTTGGAAGCTGGTTGTTCTCCTGATGCAAAGATCTATTATGCTTTGATCTCT 1557
Query 1586 GGATTGTGCCAAGTTAGACGGGATCATGACGCCATTAGAGTGGTGGAGAAACTGAAAGAA 1645
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1558 GGATTGTGCCAAGTTAGACGGGATCATGATGCCATTAGAGTGGTGGAGAAACTGAGAGAG 1617
Query 1646 GGAGGGTTTTCTCTTGACTTATTGGCTTACAACATGCTTATTGGGTTGTTTTGTGATAAG 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GGAGGGTTTTCTCTTGACTTATTGGCTTACAACATGCTTATTGGGTTGTTTTGTGATAAG 1677
Query 1706 AATAATGCAGAGAAAGTCTATGAGATGCTAACCGATATGGAAAAAGAAGGGAAGAAACCT 1765
|| ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct 1678 AACAATGCAGAGAAAGTCTACGAGATGCTAACCGATATGGAGAAAGAAGGGATGAAACCC 1737
Query 1766 GATTCCATCACTTACAACACTCTGATTTCGTTTTTCGGTAAACACAAGGACTTCGAGAGT 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 GATTCCATCACTTACAACACTCTGATTTCGTTTTTCGGTAAACACAAGGACTTCGAGAGT 1797
Query 1826 GTTGAGAGAATGATGGAGCAGATGAGAGAAGACGGGTTAGACCCGACTGTCACGACATAT 1885
|||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 1798 GTTGAGAGAATGATGGAGCAGATGAGAGAAGACGAGTTAGACCCGACTGTTGCAACATAT 1857
Query 1886 GGAGCGGTGATTGACGCTTATTGCTCAGTCGGCGAATTAGACGAAGCATTGAAGCTCTTT 1945
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1858 GGAGCGGTAATTGAAGCTTATTGCTCAGTCGGGGAATTAGACGAAGCATTGAAGCTCTTT 1917
Query 1946 AAGGACATGGGTTTGCACTCAAAGGTCAATCCGAACACTGTAATATACAACATTCTCATA 2005
|||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1918 AAGGACATGGGTTTGCGCTCAAAGGTCAATCCCAACACTGTGATATACAACATTCTCATA 1977
Query 2006 AACGCATTTTCTAAGCTGGGGAATTTCGGGCAAGCGCTCTCTCTGAAAGAGGAAATGAAG 2065
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1978 AACGCCTTTTCTAAGCTGGGGAATTTCGGACAAGCGCTGTCTCTGAAAGAGGAAATGAAG 2037
Query 2066 ATGAAGATGGTGAGACCTAATGTTGAAACTTACAATGCCTTGTTTAAGTGTCTTAACGAG 2125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2038 ATGAAGATGGTGAGACCTAATGTTGAAACTTACAATGCCTTGTTTAAGTGTCTTAAAGAG 2097
Query 2126 AA-AACCCAAG-GAGAGACATTACTTAAACTGATGGATGAGATGGTCGAACAGTCTTGTG 2183
|| |||| ||| | || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2098 AAGAACC-AAGCG-GAAACATTGCTTAAACTGATGGATGAGATGGTCGAACAGTCCTGTG 2155
Query 2184 AACCAAATCAGATCACAATGGAGATTCTAATGGAGCGTCTCTCAGGTTCTGATGAGTTAG 2243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2156 AACCAAATCAGATCACAATGGAGATTCTAATGGAGCGTCTCTCGGGTTCTGATGAGTTAG 2215
Query 2244 TTAAGCTGAGGAAGTTTATGCAAGGCTACTCTGTTGCTTCGCCGACCGAGAAAGCTTCAC 2303
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2216 TGAAGCTGAGGAAGTTTATGCAAGGTTACTCTGTTGCTTCTCCGACCGAGAAAGCTTCAC 2275
Query 2304 CTTTCGATGTCTTTAGCTTGGGATAATGTTCTTTTAGA-TACAGTAACC-A----TTACT 2357
|||||||||||||||||||||||||||||| || ||| | |||||||| | ||| |
Sbjct 2276 CTTTCGATGTCTTTAGCTTGGGATAATGTTGGTTCAGAGT-CAGTAACCTAAAGATTAGT 2334
Query 2358 ATAATGTTTTTAATAATTTCTTGATT 2383
||||||||| |||| |||||||||||
Sbjct 2335 ATAATGTTTCTAATCATTTCTTGATT 2360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90654783100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5