BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28470.1
Length=1692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894779 jgi|Araly1|894779|Al_scaffold_0006_2775 2531 0.0
> Ahg894779 jgi|Araly1|894779|Al_scaffold_0006_2775
Length=1686
Score = 2531 bits (1370), Expect = 0.0
Identities = 1581/1685 (94%), Gaps = 6/1685 (0%)
Strand=Plus/Plus
Query 13 ATGGACGTCGAATCTTCATCACCATCGTCACATGCTCTTATTAAGAAGGAGAAAGGAGGA 72
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACGTTGAATCTTCATCTCCATCGTCACATGCTCTTATTAAGAAGGAGAAAGGAGGA 60
Query 73 TGGAGAGCTATCAAGTACATTATTGCAAACGAGTCTTTTGAGAAGCTGGCCTCAATGAGC 132
|||||||||||||||||||||||||| || ||||| |||||||||||||| || ||||||
Sbjct 61 TGGAGAGCTATCAAGTACATTATTGCCAATGAGTCGTTTGAGAAGCTGGCGTCGATGAGC 120
Query 133 TTAATTGGGAATCTATCGGTGTATCTCATGACAAAATATAATCTTGGTGGTGTCTTCTTG 192
|| ||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 121 TTGATTGGGAATTTATCGGTGTATCTCACGACAAAATACAATCTTGGTGGTGTTTTCTTG 180
Query 193 GTGAACGTCATCAACATATGGTTTGGTTCTTGCAACATTCTTACACTCGCTGGTGCTTTT 252
||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 181 GTGAACGTCATCAACATCTGGTTTGGTTCTTGCAACGTTCTTACTCTCGCAGGTGCTTTT 240
Query 253 GTCTCTGATGCTTACCTTGGAAGATTTTGGACTCTTCTACTCGGTTCCATCGCCTCCTTT 312
||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 241 GTCTCCGATGCTTACCTCGGAAGATTTTGGACTCTTCTCCTCGGTTCCATTGCCTCCTTT 300
Query 313 ATAGGAATGGGAATATTTGCTCTAACCGCTGCTCTCCCGAGTTTAAGACCTGATGCTTGC 372
|| |||||||||||| ||||||||||||| ||||||||| | ||||||||||| ||||||
Sbjct 301 ATCGGAATGGGAATAATTGCTCTAACCGCGGCTCTCCCGCGATTAAGACCTGAGGCTTGC 360
Query 373 ATTGATCCATCGAATTGTTCAAACCAGCCGGCGAAATGGCAGCTCGGGGTTCTATTCTCC 432
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 361 ATCGATCCATCGAATTGTTCAAACCAGCCCGCGAAATGGCAGCTTGGGGTTCTATTCTCC 420
Query 433 GGTCTAGGTTTACTAGCCATTGGAGCAGGAGGAGTAAGACCATGCAATATCGCATTTGGA 492
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 421 GGTCTAGGTTTACTAGCCATTGGTGCAGGAGGAATAAGACCATGCAATATCGCATTTGGA 480
Query 493 GCTGATCAATTCGATACAAGCACTAAAAAGGGCAAAGCTCACCTTGAAACATTCTTTAAC 552
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 481 GCTGATCAATTCGATACAAGCACTAAAAAAGGCAAAGCCCAGCTTGAAACATTCTTTAAC 540
Query 553 TGGTGGTACTTCTCTTTCACCGTGGCTCTAGTTATTGCACTGACAGGTGTTGTCTATATA 612
|||||||||||||| ||||| ||||||||||| |||||| |||||||||| |||||||||
Sbjct 541 TGGTGGTACTTCTCCTTCACGGTGGCTCTAGTCATTGCATTGACAGGTGTCGTCTATATA 600
Query 613 CAGACTAACATCAGTTGGGTCATTGGTTTCGTGATCCCCACGGCTTGTCTTGCACTCTCC 672
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAAACTAACATCAGTTGGGTCATTGGTTTCGTGATCCCCACGGCTTGTCTTGCACTCTCC 660
Query 673 ATCACAACCTTCGTCATTGGTCAGCATACTTACATATGTGCAAAAGCTGAGGGCAGTGTG 732
||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 ATCACCACCTTCCTCATTGGTCAGCATACTTACATATGTGCAAAACCTGAGGGCAGTGTG 720
Query 733 TTCGCAGACATAGTTAAGGTTGTTACTGCGGCTTGCAAGAAACGTAAGGTGAAACCTGGA 792
|||||||||||||||||||||||| | |||||||| |||||||||||| ||||| |||||
Sbjct 721 TTCGCAGACATAGTTAAGGTTGTTGCCGCGGCTTGTAAGAAACGTAAGTTGAAATCTGGA 780
Query 793 TCAGATATAACGTTCTATATAGGCCCTTCTAATGATGGATCACCCACCACTTTGGTCCGA 852
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCAGATATAATGTTCTACATAGGCCCTTCTAATGATGGATCACCCACCACTTTGGTCCGA 840
Query 853 GACAAACACAGATTAAGGTTCTTTGACAAAGCATCTATCGTAACGAATCCGAACGAGTTA 912
|||||||| || |||||||| |||||||||||||| | ||||| |||||||||||||||
Sbjct 841 GACAAACAAAGGTTAAGGTTTTTTGACAAAGCATCGGTGGTAACTAATCCGAACGAGTTA 900
Query 913 AACGAAGACGGTAACGCGAAGTACAAATGGAGATTATGTAGTGTGCAGCAGGTGAAAAAC 972
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AACGAAGAAGGTAATGCGAAGTACAAATGGAGATTATGTAGTGTGCAGCAGGTGAAAAAC 960
Query 973 CTCAAGTGTGTGACAGCAATTTTACCAGTTTGGGTCACGGGAATCGCGTGTTTCATACTG 1032
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTCAAGTGTGTGACCGCAATTTTACCAGTTTGGGTCACGGGAATCGCGTGTTTCATACTG 1020
Query 1033 ACTGACCAACAAAACATTTACGGGATCCTTCAAGCAATGCAGATGGATAAAACGTTTGGA 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 ACTGACCAACAAAACATTTACGGGATCCTTCAAGCAATGCAGATGGATAAAACGTTCGGA 1080
Query 1093 CCACATAACTTCCAAGTCCCGGCAGGATGGATGAATCTCGTCTCCATGATCACTCTAGCG 1152
| |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 1081 CGACATAATTTCCAAGTCCCAGCAGGATGGATGAATCTCGTCTCTATGATCACTCTCGCG 1140
Query 1153 ATTTGGATCTCACTTTACGAGTGTGTTATCATACCAATAGTGAAACAAATCACGGGTCGG 1212
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 1141 ATTTGGATCTCACTTTACGAGTGCGTTATCATACCAATAGTGAAACAAATCACAGGACGG 1200
Query 1213 AAAAAACGGTTAACGTTAAAACATAGAATCGAGATAG-TA----A-TGGGAATCATTTGT 1266
||||||||||| ||| | ||||| ||||||||||||| || | |||||||| ||||
Sbjct 1201 AAAAAACGGTTGACGATGAAACAAAGAATCGAGATAGGTATCGTAATGGGAATCGCTTGT 1260
Query 1267 ATGATTGTCGCGGGTTTCCAAGAGAAGAAGCGAAGAGCATCCGCTCTAAAGAATGGCTCA 1326
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1261 ATGATTGTCGCGGCTTTCCAAGAGAAGAAGCGAAGAGCCTCCGCTCTAAAGAATGGCTCA 1320
Query 1327 TTCGTGTCGCCGGTTTCTATTGTAATGCTCCTTCCTCAGTTCGCTCTTGCCGGTTTAACC 1386
||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1321 TTCGTATCGCCCATTTCTATTGTAATGCTCCTTCCTCAGTTTGCTCTTGCGGGTTTAACC 1380
Query 1387 GAAGCGTTTTCCGCGGTGGCTCTGATGGAGTTTCTGACGGTTAGGATGCCTGAGCATATG 1446
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1381 GAAGCGTTTTCCGCGGTGGCTCTTATGGAGTTTCTGACGGTTAGGATGCCTGAGCATATG 1440
Query 1447 AGAGCGGTTGCTGGAGCGATCTTCTTCTTGAGCTCGTCGATTGCGAGTTACATATGCACA 1506
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGAGCAGTTGCTGGAGCAATCTTCTTCTTGAGCTCGTCGATTGCGAGTTACATATGCACG 1500
Query 1507 CTTCTTATAAATGTGATTGATGCCGTGACGCGCAAGGAAGGGAAATCTTGGTTAGGAGAC 1566
||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1501 CTTCTAATAAATGTGATAGATGCCGTGACACGCAAGGAAGGGAAATCGTGGTTAGGAGAC 1560
Query 1567 AAAGACTTGAACAAGAACAGGCTTGAGAATTACTTTTTCATAATAGCCGGCATTCAAGTC 1626
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1561 AAAGATTTGAACAAGAACAGGCTTGAGAACTACTTTTTCATAATAGCCGGCATTCAAGTC 1620
Query 1627 GCGAATCTTCTCTATTTTAGGTTATTTGCTTCAAGGTATGCCACTGAAAACAAAAAAGGA 1686
|||||||| |||||||||| ||| | ||||||||||| ||||||||| ||||||||||||
Sbjct 1621 GCGAATCTGCTCTATTTTAAGTTCTATGCTTCAAGGTTTGCCACTGATAACAAAAAAGGA 1680
Query 1687 CACTA 1691
|||||
Sbjct 1681 CACTA 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63458348170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5