BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28490.1
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489650 jgi|Araly1|489650|fgenesh2_kg.6__2784__AT5G28490.1 1190 0.0
> Ahg489650 jgi|Araly1|489650|fgenesh2_kg.6__2784__AT5G28490.1
Length=760
Score = 1190 bits (644), Expect = 0.0
Identities = 723/760 (95%), Gaps = 10/760 (1%)
Strand=Plus/Plus
Query 55 TTTTCCAAAATCAAGAACAA-G-AAAAAGCCATGGATTTGATCTCTCACCAACCAAACAA 112
|||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 1 TTTTCCAAAATCAAGAACAAGGAAAAAAACCATGGATTTGATCTCTCACCAACCAAACAA 60
Query 113 GAACCCTAATTCCTCAACACAACTAACACCACCTTCCTCAAGCCGGTACGAGAACCAAAA 172
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 61 GAACCCTAATTCCTCAACACAATTAACACCACCTTCCTCAAGCCGGTACGAGAACCAGAA 120
Query 173 ACGCCGTGACTGGAACACTTTCTGTCAATACCTCCGGAACCACCGTCCTCCGCTCTCTCT 232
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 ACGCCGTGACTGGAACACTTTCTGTCAATACCTCAGGAACCACCGTCCTCCGCTCTCTCT 180
Query 233 CCCCTCGTGTAGCGGCGCACACGTGCTCGAGTTCCTCCGCTACCTTGACCAGTTCGGGAA 292
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 181 CCCGTCGTGTAGCGGCGCACACGTGCTCGAGTTCCTCCGCTACCTCGACCAGTTCGGAAA 240
Query 293 AACAAAAGTTCACCACCAGAACTGTGCCTTCTTTGGCCTCCCTAACCCTCCTGCTCCTTG 352
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 241 AACAAAAGTTCACCACCAGAACTGTGCCTTCTTCGGCCTCCCCAACCCTCCTGCTCCTTG 300
Query 353 TCCTTGTCCTCTCCGGCAAGCTTGGGGCTCACTCGACGCTCTTATCGGCCGCCTCCGCGC 412
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 301 TCCTTGCCCTCTCCGGCAAGCTTGGGGATCACTCGACGCTCTCATCGGCCGCCTCCGCGC 360
Query 413 CGCCTACGAGGAGAACGGTGGCCCACCTGAAGCTAACCCATTTGGCTCACGCGCCGTCAG 472
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 CGCCTACGAGGAGAACGGTGGCCCTCCTGAAGCTAACCCATTTGGCTCACGCGCCGTCAG 420
Query 473 GTTATTCCTCCGTGAAGTCAGAGACTTTCAAGCCAAAGCTCGAGGTGTTAGCTATGAGAA 532
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 GTTATTCCTCCGTGAAGTCAGAGACTTTCAAGCCAAAGCTCGTGGTGTTAGCTATGAGAA 480
Query 533 GAAGAGGAAGAGAGTCAACAGGCAGAAACCGCAAACGCAGCCGCCTCTACAGCTTCAGCA 592
|||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||||
Sbjct 481 GAAGAGGAAGAGAGTCAATAGACAGAAACTGCAAACGCAGCCGCCTCTACCGCTTCAGCA 540
Query 593 ACA---GCA--A-CAGCAGCCACAACAAGGTCAGTCTATGATGGCTAATTACTCGGGTGC 646
||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 541 ACAACAGCAGCAGCAGCAGCCTCAACAAGGTCAGTCTTTGATGGCTAATTACTCGGGTGC 600
Query 647 AACAGTATGATCATATTTATATAATTTCCCCTTTT--CTATATGTATTGTCTCTTATTTG 704
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 AACAGTATGATCATATTTATATAATTTCCCCTTTTTACTATATGTATTGTCTCTTATTTG 660
Query 705 CTTTCTCTAAGATATTAATGTAAAACCTTCTTTTACATTATCTACTGATGCTTTTGTTTC 764
|||| |||||| | ||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 661 CTTTATCTAAGTTTTTAATGTAATATCTTCTTTTACATTATCCACTGATGCTTTTGTTTC 720
Query 765 TGTACTAGTTGTTTATGAATAAGAAAAACTACGATTATTT 804
|||||||||||||||||||||||| |||||||||||||||
Sbjct 721 TGTACTAGTTGTTTATGAATAAGATAAACTACGATTATTT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29697752343
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5