BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28500.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489651 jgi|Araly1|489651|fgenesh2_kg.6__2785__AT5G28500.1 2126 0.0
Ahg905007 jgi|Araly1|905007|Al_scaffold_0003_2135 217 3e-55
> Ahg489651 jgi|Araly1|489651|fgenesh2_kg.6__2785__AT5G28500.1
Length=1424
Score = 2126 bits (1151), Expect = 0.0
Identities = 1339/1428 (94%), Gaps = 20/1428 (1%)
Strand=Plus/Plus
Query 1 AACAACCACCATCATCGTCTCCA--CTCTC-TCA--T---CACCACCATGCTTTCTCTAA 52
|||||| |||||| ||||||||| ||||| ||| | |||||||||||||||||| |
Sbjct 1 AACAACAACCATCTTCGTCTCCACTCTCTCATCACCTCACCACCACCATGCTTTCTCTCA 60
Query 53 CTGCAACAACTCTCAGTTCCTCCA-TTTTCACACAATCCAAAACCCATGGATTCTTCAAT 111
||||||||||||||| |||| || | |||||||||||||||||||||||||||| || |
Sbjct 61 CTGCAACAACTCTCAAATCCT-CACTCTTCACACAATCCAAAACCCATGGATTCTCCACT 119
Query 112 ACCCGACCCGTTTACCGAAAACCCTTCACCACCATCACCTCCGCTTTAATCCCCGCTTCA 171
|||||||||||||||| |||||||||||||||||| ||| |||| |||||||||||||||
Sbjct 120 ACCCGACCCGTTTACCCAAAACCCTTCACCACCATAACCGCCGCCTTAATCCCCGCTTCA 179
Query 172 AACCGTCAAGCTCCACCAAAACAACAACTCTATCAACCATTCCGTCCACCACCATCACCA 231
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AACCGTCAAGCTCCACCACAACAACAACTCTATCAACCATTCCGTCCACCACCATCACCA 239
Query 232 ATCCCTCCAAAGTTCCGATCACTCGACACCGCCGGAAAAATCGAAGTCCTCGCTGATCGT 291
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATCCCTCCAAAATTCCGATCACTCGACACCGCCGGAAAAATCGAAGTCCTCGCTGATCGT 299
Query 292 CTCGGTCTCTGGTTCGAATACGCTCCACTCATTTCCTCCTTATACACTGAAGGATTCACT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 300 CTCGGTCTCTGGTTCGAATACGCTCCACTCATTTCCTCCTTATACACTGAAGGCTTCATT 359
Query 352 CCTCCATCAATCGAAGAACTCACCGGAATCTCCGGTGTCGAACAGAA-CAGTCTCATCGT 410
||||||||||||||||||||||||||| | || |||||||||||||| | ||||||||||
Sbjct 360 CCTCCATCAATCGAAGAACTCACCGGACTTTCTGGTGTCGAACAGAATC-GTCTCATCGT 418
Query 411 CGGCGCGCAAGTTCGAGACTCTTTAGTTCAATCCGGTGCCAAACCGGAGCTTATAGCTGC 470
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 419 CGGCGCGCAAGTTCGTGACTCTTTAGTTCAATCCGGTGCCAAACCGGAGCTGATCGCTGC 478
Query 471 GTTTGACACAAATGGAGCCGAGCTTCTCTACGAGATTCGTCTTTTAAACACAACTCAACG 530
||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 479 GTTTGACACCGGTGGAGCCGAGCTTCTCTACGAGATTCGTCTTTTGAATACAACTCAACG 538
Query 531 TGTAGCTGCTGCTGAATACATTGTTGATCACGGTTTCGATACGAAAGGAGCTGGAGATCT 590
| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 539 TATAGCTGCTGCTGAATACATTGTTGATCACGATTTCGATACGAAAGGAGCTCAAGATCT 598
Query 591 TGCGAGAGCGATTAAAGATTTTCCGCATCGTCGTGGCGACGTTGGTTTGGGA-GACTTTG 649
|||||||||||||||||||| |||||||||||| || || ||||| | |||| || ||||
Sbjct 599 TGCGAGAGCGATTAAAGATTATCCGCATCGTCGCGGTGATGTTGGAT-GGGAAGATTTTG 657
Query 650 ATTATAACTTACCTGGAGATTGTTTGTCTTTTATGCTTTATAGGAAAAGTAGAGAGCATC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 ATTATAACTTACCTGGAGATTGTTTGTCTTTTATGCTTTATAGGAAAAGTAGAGAATATC 717
Query 710 GGAGTCCGTCGGAGATTCGAACTACATTACTCGAACAAGCTCTTGAAACCGCGGTAACAG 769
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 718 GGAGTCCGTCGGAGATTCGAACTACATTGCTCGAACAAGCTCTTGAAACTGCGGTAACAG 777
Query 770 AGAAGGCGAAAAAGGCGGTG-TTGAGGGAGTTACATGgagagagtgaagaagagagagtt 828
|||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 778 AGAAAGCGAAAAAGGCGGTGGTT-AGGGAGTTACATGGAGAGAGTGAAGAAGAGAGAGCT 836
Query 829 aaagaagaggagaTAAAAATCATTCGTGTTCCTGTAGTGAGATTAAGGTTTGGAGAAGTA 888
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 AATGAAGAGGAGATAAAAATCATTCGTGTTCCTGTAGTGAGATTGAGGTTTGGAGAAGTA 896
Query 889 GCGGGAGCGAGTTCGGTTGTTGTTTTACCGGTTTGTAAAGCAGAAGAAGGAGAAGAGAAG 948
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 897 GCGGGAGCGAGTTCGGTTGTTGTTTTACCGGTTTGTAAAGCAGAGGAAGGAGAGGAGAAG 956
Query 949 CTTCTTGAAGCACCAATGGAGTTTGAAAGTGGAGGAGAGTTTGGTGTAGTGGAAGCTGAG 1008
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 957 CTTCTTGAAGCTCCAATGGAGTTTGAAACTGGAGGAGAGTTTGGTGTAGTGGAAGCTGAG 1016
Query 1009 AAAGATTGGAGTAGATGGGTGGTTTTACCGGGTTGGGATCCCGTGGTTGCGGTTAGGAAA 1068
|||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct 1017 AAAGATTGGAGTAGATGGGTTGTTTTACCGGGTTGGGAACCCGTTGTGGCGGTTAGGAAA 1076
Query 1069 GGAG---TGGCGGTTTCGTTTAGCGATGATAGGGAAGTTTTGCCGTGGAACGGGAAAGGA 1125
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1077 GGAGGAGTGGCGGTTTCGTTTAGAGATGATAGGGAAGTTTTGCCGTGGAACGGGAAAGAA 1136
Query 1126 GAGGCGATAATGGTTGTGATCGATAGGGAAAAGAAGACGGTGGAAGCTGATAATGGATAC 1185
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1137 GAGGCGATAATGGTTGTGATCGATAGGGAGAAGAAGACGGTGGAAGCGGATAATGGATAT 1196
Query 1186 TACTACCTTGTTGTGGCTGATGGTGGGATGAAGTTGGATAGAGGATTGGTGTTGAAGGAG 1245
||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1197 TACTATCTTGTTGTGGCTGAAGGTGGGATGAAGTTGGATAGAGGATCGGTGTTGAAGGAG 1256
Query 1246 AAAGGAGTGAATGAGAGCTTAGGAATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGAT 1305
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1257 AAAGGAGTGAATGAGAGTTTAGGGATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGAT 1316
Query 1306 GATGATGAGTGGCAGATAAATGATGAAGATTGGGATTAGAATTCAATTAGAAGAATAGTT 1365
|||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1317 GATGATGATTGGCAGATAAATGATGAAGATTGGGATTAGAATTCAATTAGAGGGATAGTT 1376
Query 1366 AAACAAATACTTA-TATGCTTTTGGTTTTGGCAAATATGTAAtttttt 1412
|||||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 1377 AAACAAATACTTTGTATGCTTTTGGTTCTGGAAAATATGTAATTTTTT 1424
> Ahg905007 jgi|Araly1|905007|Al_scaffold_0003_2135
Length=273
Score = 217 bits (117), Expect = 3e-55
Identities = 133/140 (95%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 1208 GTGGGATGAAGTTGGATAGAGGATTGGTGTTGAAGGAGAAAGGAGTGAATGAGAGCTTAG 1267
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 134 GTGGGATGAAGTTGGATAGAGGATCGGTGTTGAAGGAGAAAGGAGTGAATGAGAGTTTAG 193
Query 1268 GAATGGTTGTTTTGGTCGTTAGGCCGCCGAGAGATGATGATGATGA-G-T-GGCAGATAA 1324
| |||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||
Sbjct 194 GGATGGTTGTTTTGGTGGTTAGGCCGCCGAGAGATGATGATGATGATGATTGGCAGATAA 253
Query 1325 ATGATGAAGATTGGGATTAG 1344
||||||||||||||||||||
Sbjct 254 ATGATGAAGATTGGGATTAG 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5