BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28510.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478241 jgi|Araly1|478241|fgenesh2_kg.3__942__AT3G09260.1 1253 0.0
Ahg475732 jgi|Araly1|475732|fgenesh2_kg.2__862__AT1G66280.1 1057 0.0
Ahg905006 jgi|Araly1|905006|Al_scaffold_0003_2134 791 0.0
Ahg359476 jgi|Araly1|359476|fgenesh1_pg.C_scaffold_275000001 691 0.0
> Ahg478241 jgi|Araly1|478241|fgenesh2_kg.3__942__AT3G09260.1
Length=1941
Score = 1253 bits (678), Expect = 0.0
Identities = 1306/1601 (82%), Gaps = 76/1601 (5%)
Strand=Plus/Plus
Query 28 TCT-ATTGGGCTGCTTTGGCTACTAATCATCGTAGGTCCGCT--GGTAAATGCCGATGGA 84
||| ||||||||||||| ||| |||| |||||| | || || | |||||| ||||||
Sbjct 240 TCTCATTGGGCTGCTTTTGCTCCTAACCATCGT-CG-CCTCTCCAGCAAATGCAGATGGA 297
Query 85 CCTGTTTGCCCACCGAAACCGTCGGA-CAAACTAAGCCGGGCACA-TTTTCCTAAAGGTT 142
||||| || | ||| || || || |||||||||||||||| | ||| ||| ||||||
Sbjct 298 CCTGTATG--C-CCG---CCTTC-GACCAAACTAAGCCGGGCA-AGTTTCCCTGAAGGTT 349
Query 143 TTTTATTTGGCACAGCGACTGCGGCATATCAGGTTGAAGGTGCAGTGAATGAAACTTGTC 202
||||||||||||| || ||||||||||| ||||| ||||||||| | |||||||||||||
Sbjct 350 TTTTATTTGGCACCGCTACTGCGGCATACCAGGTCGAAGGTGCAATTAATGAAACTTGTC 409
Query 203 GTGGACCATCCGTATGGGATATCTATTGTAAAAAATATCCAGAAAAATGCAATGGCGATA 262
|||||||| | ||||||| ||||| |||| | |||||| || | ||||||| |||||
Sbjct 410 GTGGACCAGCTTTATGGGACATCTACTGTAGGAGATATCCTGAGAGATGCAATAACGATA 469
Query 263 ATGGT-ACTCAAGCTGTTGATTTCTTCTATCGTTACAAGGAAGATATTCAATTAATGAAG 321
| ||| | | || |||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 470 ACGGTGA-TGTGGCCGTTGATTTCTTCCATCGTTATAAGGAAGATATTCAACTAATGAAG 528
Query 322 AATCTAAACACAGATTCCTTCAGATTATCTATCTCATGGACAAGAATTTTTCCTCACGGG 381
|| ||||||||||| | |||||| | |||||| ||||| ||||||| |||||||| |||
Sbjct 529 AACCTAAACACAGACGCTTTCAGAATGTCTATCGCATGGCCAAGAATATTTCCTCATGGG 588
Query 382 AGAGAA-GAGAATGGAGTGAGTAAATCTGGTGTTCAATTCTACCATGACCTCATTGACGA 440
||| || ||||| ||||||||| || ||||||| ||||| |||||||||||||| |||||
Sbjct 589 AGA-AAGGAGAAAGGAGTGAGTCAAGCTGGTGTGCAATTTTACCATGACCTCATCGACGA 647
Query 441 GCTCAAAAGAAACGGTATAATTCCGTTCGTGACTGTTTTTCATTGGGACACGCCACAA-A 499
||||| |||||| ||||||| ||| ||||| ||||||||||| |||||||| |||||| |
Sbjct 648 GCTCATAAGAAATGGTATAACTCCATTCGTTACTGTTTTTCACTGGGACACTCCACAAGA 707
Query 500 CTCTAG-AGAATGAATATGGGGGCTTCTTAAGCGCACA-CATTGTGAAAGATTTTCGGGA 557
| ||| || | |||||||| || || ||||||| | | |||||||| ||||| || ||
Sbjct 708 -TTTAGAAG-ACGAATATGGCGGATTTTTAAGCG-ATAGGATTGTGAAGGATTTCCGAGA 764
Query 558 GTATGCTGAGTTTGTTTTCAAAGAATATGGTGGAAAAGTTAAACATTGGATCACTTTTAA 617
|||||| || ||||||||| ||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 765 GTATGCAGACTTTGTTTTCCAAGAATACGGTGGAAAAGTGAAACATTGGATCACTTTCAA 824
Query 618 CGAGCCATGGGTTTTCGCGCATGCCGGTTATGACGTTGG-AAAGAAAGCACCTGGACGTT 676
||||||||||||||| |||| || ||||||||||| || ||| || |||||||||||||
Sbjct 825 TGAGCCATGGGTTTTCTCGCACGCTGGTTATGACGTAGGCAAA-AAGGCACCTGGACGTT 883
Query 677 GTTCTCCTTACGCCAAGGACGAAACTGTCAAGGGAGATTGTCTAGGCGGACGATCAGGTT 736
| ||| |||||| ||| | | ||| || | | | | | |||||||||||| |
Sbjct 884 GCTCTTCTTACGTCAATG-CTAAA-TG-C----CA-A--G---A--CGGACGATCAGGAT 928
Query 737 ATGAGGCTTATCTAGTCAGTCACAACCTCC-TCAACGCTCATGCAGAAGCCGTTGAAGCT 795
| ||||||||||| |||| |||||| |||| || | |||| |||||||||||||||||
Sbjct 929 ACGAGGCTTATCTCGTCACTCACAATCTCCTTC-TCTCTCACGCAGAAGCCGTTGAAGC- 986
Query 796 TTTC-GACAATGTGAAAAATGTAAGGGTGGAAAGATCGGAATCGCACATAGTCCGGCTTG 854
|| | || |||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 987 TTACAGAAAATGCGAAAAGTGTAAAGGTGGGAAGATTGGAATCGCACATAGTCCGGCTTG 1046
Query 855 GTTTGAACCACATGACTTTAAAGATGAACAAAG-TGGTGCGACCATTGACCGTGCACTTG 913
||| ||| |||||||| || ||| || ||| |||||| |||| |||||||||||||
Sbjct 1047 GTTCGAAGCACATGACCTTGCTGATTCAC-AAGACGGTGCGTCCATCGACCGTGCACTTG 1105
Query 914 ACTTTATAATGGGATGGCATCTGGACACAACTATGTTTGGGGATTATCCACAGA-CAATG 972
||||||| ||||||||||||| |||||||| | |||||| ||||||||||||| | |||
Sbjct 1106 ACTTTATTTTGGGATGGCATCTAGACACAACGACGTTTGGAGATTATCCACAGATC-ATG 1164
Query 973 AAAGACATTGTTGGACATAGATTGCCTAAATTTACTACTGAGCAGATAGCAAAACTCAAA 1032
|||||||||||||||||||||||||| |||||||| |||||||||| ||||||| | |||
Sbjct 1165 AAAGACATTGTTGGACATAGATTGCCCAAATTTACAACTGAGCAGAAAGCAAAATTGAAA 1224
Query 1033 AACTC-AGCCGATTTCGTAGGGATCAATTACTATACTTCTACATTTTCAAAACACTTGGA 1091
| || | |||||||||| ||| |||| ||||||||||| |||||||| || |||||
Sbjct 1225 GATTCTA-CCGATTTCGTTGGGCTCAACTACTATACTTCGGTGTTTTCAAACCATTTGGA 1283
Query 1092 GAAGCCAAA-CCATGCAGAACCAAAATTTAAACAAGATTCTCTTGTTGA-ATGGAAAAAT 1149
||| || | || | || |||||| || | |||||||||||| || | |||| | |
Sbjct 1284 GAAACCTGATCCTT-CAAAACCAAGATGGATGCAAGATTCTCTTATT-ACATGGGAGTCT 1341
Query 1150 AAAAAT--GTAAACAATA-TCACTATTGGTAGCAAGCCTGAAACCGGTCCATTGC-CAGT 1205
|| ||| | ||| | || || | ||||||||||||||| |||| | ||||| | ||
Sbjct 1342 AAGAATCCGCAAA-ATTACTC-C-ATTGGTAGCAAGCCTTTGACCGCTGCATTGAAC-GT 1397
Query 1206 TTATTCTACAGGCTTTAGAAAAGTTTTGAAATACGTCAAAGATAAATACGCAAATCCTGA 1265
||| || | ||| ||||||| ||||||| ||| |||| ||||||||||||||||| ||
Sbjct 1398 TTACTCGAGAGGGTTTAGAAGTCTTTTGAAGTACATCAAGGATAAATACGCAAATCCCGA 1457
Query 1266 AATTATCATCATGGAAAACGGATATGGAGAA-AACCTTAAAGAGA-ACGATTCGGTTGAA 1323
|||||| ||||||||||||||||| |||||| ||| || | | |||||| | |
Sbjct 1458 AATTATGATCATGGAAAACGGATACGGAGAAGAAC-TTGGGGCCTCA-GATTCGATCGCT 1515
Query 1324 AATGGTACTGCTGATTACAACAGGGAA-AGTTATCTTAAGAAGCATCTTTGGAGTATGCA 1382
|||||| |||||||||||||| || | ||||||| ||| |||||||| |||||||||
Sbjct 1516 GTTGGTACCGCTGATTACAACAGAAAATA-TTATCTTCAGAGGCATCTTTTGAGTATGCA 1574
Query 1383 CA-AAGCTATTTGCGAA-GACAAGGTAAATGTTACAGGATATTTTGTATGGTCATTGATG 1440
| ||||| ||||| | ||||| || |||||||||||||| ||||||||||||||| ||
Sbjct 1575 -AGAAGCTGTTTGC-ATCGACAAAGTGAATGTTACAGGATACTTTGTATGGTCATTGTTG 1632
Query 1441 GATAACTTTGAGTGGCAAGATGGTTTTAAAAACAGATTTGGACTGTATTACATTGATTAC 1500
|||||||| |||||||||||||||| |||||||||||| ||||| || |||||||||| |
Sbjct 1633 GATAACTTCGAGTGGCAAGATGGTTATAAAAACAGATTCGGACTCTACTACATTGATTTC 1692
Query 1501 AAAAACAACCTCACACGTCATGAGAAAGTTTCGGGCAAGTATTATAGAGAA-TTCCTTAG 1559
||||| |||||||||||| | ||||||| || ||||||||||| | || | ||||| ||
Sbjct 1693 AAAAATAACCTCACACGTTACGAGAAAGAATCCGGCAAGTATTACA-AGGAGTTCCTCAG 1751
Query 1560 TGAGGGAGTTCGTCCATCCGCTATCAAGAAGGATGAGCTTT 1600
| | || ||||||||||| || |||||||||||||||||||
Sbjct 1752 TCAAGGTGTTCGTCCATCAGCGATCAAGAAGGATGAGCTTT 1792
> Ahg475732 jgi|Araly1|475732|fgenesh2_kg.2__862__AT1G66280.1
Length=1756
Score = 1057 bits (572), Expect = 0.0
Identities = 1305/1643 (79%), Gaps = 113/1643 (7%)
Strand=Plus/Plus
Query 1 ATGGTATTGCAAAAACTTCCTCTCATGTCTATTGGGCTGCTTTGGCTACTAATCATCGTA 60
|||| ||||||||| ||||||||||| |||||||||| ||| |||| ||||||
Sbjct 1 ATGGCATTGCAAAAGTTTCCTCTCATG------GGGCTGCTTTTGCTCCTAACCATCGT- 53
Query 61 GGTCCGC-TGGTA-AAT-G-C--CGATGGA-CCTGTTTGCCCACCGA-AACCGTCGGACA 112
|| | | | | | ||| | | |||| || |||||||| | |||| | |||| ||
Sbjct 54 CGT-CTCTTCG-ACAATAGCCGTCGAT-GATCCTGTTTG--C-CCGACTA-CGTC---CA 103
Query 113 AACTAAGCCGGGCACA-TTTTCCTAAAGGTTTTTTATTTGGCACAGCGACTGCGGCATAT 171
|||||||||| ||| | ||| ||||| |||||||| |||||||| || ||||| || | |
Sbjct 104 AACTAAGCCGAGCA-AGTTTCCCTAACGGTTTTTTGTTTGGCACGGCTACTGCTGCGTTT 162
Query 172 CAGGTTGAAGGTGCAGTGAATGAAACTTGTCGTGGACCATC-CGTATGGGATATCTATTG 230
||||||||||||||| | ||||||||||| |||||||| | | |||||||||||| |||
Sbjct 163 CAGGTTGAAGGTGCAATTAATGAAACTTGCCGTGGACCGGCTC-TATGGGATATCTTTTG 221
Query 231 TA-AAAAATATCCAGAAAAATGCAATGGCGATAATG--GTACTCAAGCTGTTGATTTCTT 287
|| | || ||||||| | ||| | |||| | || | | | | || |||||||||||
Sbjct 222 TAGGAGAA-ATCCAGAGAGATGTAGTGGCCACAACGCCG-A-TGTGGCCGTTGATTTCTT 278
Query 288 CTATCGTTACAAGGAAGATATTCAATTAATGAAGAATCTAAACACAGATTCCTTCAGATT 347
| ||||||| ||||||||||||||| |||||||||||||||||||||| | |||||| |
Sbjct 279 CCATCGTTATAAGGAAGATATTCAACTAATGAAGAATCTAAACACAGACGCATTCAGACT 338
Query 348 ATCTATCTCATGGACAAGAATTTTTCCTCACGGGAGAGAA-GAGAATGGAGTGAGTAAAT 406
|| ||||||||| ||||||| |||||||| || ||| || ||||| ||||||||| |||
Sbjct 339 CTCAATCTCATGGTCAAGAATATTTCCTCATGGAAGA-AAGGAGAAGGGAGTGAGTCAAT 397
Query 407 CTGGTGTTCAATTCTACCATGACCTCATTGACGAGCT-CAAAAGAAACGGTATAATTCCG 465
||||||| |||||||||| || |||| || ||||| | ||| ||| || ||| ||||
Sbjct 398 CTGGTGTGAAATTCTACCACGATGTCATCGATGAGCTCCTAAA-AAATGGCATACTTCC- 455
Query 466 TT-CGTGACTGTTTTTCATTGGGACACGCCACAA-ACTCTAG-AGAATGAATATGGGGGC 522
|| |||||||||||||||||||||||| |||||| | | ||| || | |||||||| ||
Sbjct 456 TTCCGTGACTGTTTTTCATTGGGACACTCCACAAGA-TTTAGAAG-ACGAATATGGCGGT 513
Query 523 TTCTTAAGCGC-ACACATTGTGAAAGATTTTCGGGAGTATGCTGAGTTTGTTTTCAAAGA 581
||||||||| | | ||||||| |||||||| ||||| ||||| || |||||||||| |||
Sbjct 514 TTCTTAAGC-CAAAACATTGTAAAAGATTTCCGGGAATATGCAGATTTTGTTTTCACAGA 572
Query 582 ATATGGTGGAAAAGTTAAACATTGGATCACTTTTAACGAGCCATGGGTTTTCGCGCATGC 641
||| ||||||||||| ||| | ||||||||||| |||||||||||||| ||||| |||||
Sbjct 573 ATACGGTGGAAAAGTGAAAAACTGGATCACTTTCAACGAGCCATGGGTCTTCGCTCATGC 632
Query 642 CGGTTATGACGTTGGAAAGAAAGCACCTGGACGTTGTTCTCCTTACGCCAAGGACGAAAC 701
||||| ||||| || ||||| ||||| ||||||||||||| ||||| || | |
Sbjct 633 AGGTTACGACGTAGGCAAGAAGGCACCAGGACGTTGTTCTCGTTACGTTAA--A-G--GT 687
Query 702 TGTCAAGGGAGATTGTCTAGGCGGACGATCAGGTTATGAGGCTTATCTAGTCAGTCACAA 761
|| | | ||| | || |||||||| |||||||||||||||||||||||||||||
Sbjct 688 TG-C---GAAGA---CCGAGATGGACGATCCGGTTATGAGGCTTATCTAGTCAGTCACAA 740
Query 762 CCTCCTCAACGCTCATGCAGAAGCCGTTGAAGCTTTTCGACAATGTGAAAAATGT-AAGG 820
||||||||||||||| |||||||| ||||||| ||||| | | |||| || || |
Sbjct 741 CCTCCTCAACGCTCACGCAGAAGCTGTTGAAG-TTTTC--C---GCCAAAAG-GTTAAAG 793
Query 821 GT-GGAAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCACATGACTTTAAAGAT 879
|| ||||| || |||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 794 GTTGGAAAT-TCTGAATGGCACATAGTCCGGCTTGGTTCGAACCACATGACCTTAAAGAT 852
Query 880 GAACAAAGTGGTGCGACCA--T-T-GACCGTGCACTTGACTTTATAATGGGATGGCATCT 935
|||| || | ||| | | | ||||| |||||||||||| |||||||||||||
Sbjct 853 T--CAAA-TGACACT-CCAACTGTCGGCCGTGTACTTGACTTTATGTTGGGATGGCATCT 908
Query 936 GGACACAACTA-TGTTTGGGGATTATCCACAGA-CAATGAAAGACATTGTTGGACATAGA 993
||| |||||| | ||||| ||||||||||| | || |||||||| || |||| || |||
Sbjct 909 AGACCCAACTACT-TTTGGAGATTATCCACAAATCA-TGAAAGACCTTCTTGGCCACAGA 966
Query 994 TTGCCTAAATTTACTACTGAGCAGATAGCAAAACTCAAAAACTC-AGCCGATTTCGTAGG 1052
|||||||||||||| | || ||| | ||||||| | ||| | || | |||||||||||||
Sbjct 967 TTGCCTAAATTTACGAATGCGCAAAAAGCAAAATTGAAAGATTCGA-CCGATTTCGTAGG 1025
Query 1053 GA-TCAATTACTATACTTCTACATTTTCAAAACACT--TGGAGAAGCCAAA-CCATGC-A 1107
| | || ||||||||||| ||||||||||| || | || |||||||| | || | | |
Sbjct 1026 -ACTTAACTACTATACTTCAACATTTTCAAACCA-TAATG-AGAAGCCAGATCCGT-CTA 1081
Query 1108 GAACCAAAATTTAAA-CAAGATTCTCTTGTTGAATGGAAAAATAAAAATGTAAACAATAT 1166
| |||| || || |||||||||||||||| ||| || ||| ||||| || | |
Sbjct 1082 CA-CCAAG-TTGGAAGCAAGATTCTCTTGTTGCCTGGGAACCTAAGAATGTCGACCACAG 1139
Query 1167 CACTATTGGTAG-CAAGCCTGAAACCGGTCCATTGCCAGTTTATTCTACAGGCTTTAGAA 1225
| | |||||||| || |||| || | | | ||||| || || ||| ||| |||||||
Sbjct 1140 CGCCATTGGTAGTCA-GCCTCTTACTGCTGCGTTGCCCGTCTACGCTAAAGGTTTTAGAA 1198
Query 1226 AAGTTTTGAAA-TACGTCAAAGATAAATACGCAAATCCTGAAATTATCATCATGGAAAAC 1284
|||| ||| ||| |||| |||||||||||||| || |||||||| |||||||||||
Sbjct 1199 GTCTTTT-AAAGTACATCAAGGATAAATACGCAAACCCCGAAATTATGATCATGGAAAAT 1257
Query 1285 GGATATGGAGA-AAACCTTAAAG-AGAACGATTCGGTTGAAAATGGTACTGCTGATTACA 1342
||||||||||| |||| | || | | || ||||||||||| ||||||||||||| | |
Sbjct 1258 GGATATGGAGATAAAC-T-AAGGGACAAAGATTCGGTTGAGGTTGGTACTGCTGATCATA 1315
Query 1343 ACAGGGAA-AGTTATCTTAAGAAGCATCTT-TGGAGTATGCACAAAGCTATTTGCGAA-G 1399
||||| || | ||||||| ||| ||||||| ||| |||| || | ||||||||| | |
Sbjct 1316 ACAGGAAATA-TTATCTTCAGAGGCATCTTCTGGC-TATGAACGAGGCTATTTGC-ATCG 1372
Query 1400 ACAAGGTAA-ATGTTACAGGATATTTTGTATGGTCATTGATGGATAACTTTGAGTGGCAA 1458
||||||| | | ||||| ||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 1373 ACAAGGTGAGA-GTTACGGGATACTTTGTATGGTCATTGTTGGATAACTTTGAATGGCAA 1431
Query 1459 GATGGTTTTAAAAACAGATTTGGACTGTATTACATTGATTACAAAAACAACCTCACACGT 1518
||||||| ||| || ||||| ||||| |||||| | |||| |||||| ||||||||||||
Sbjct 1432 GATGGTTATAATAATAGATTCGGACTCTATTACGTCGATTTCAAAAATAACCTCACACGT 1491
Query 1519 CATGAGAAAGTTTCGGGCAAGTATTATAGAGAATTCCTTAG-TGAGGGAGTTCGTCCATC 1577
||||||||| || | ||||||||| | ||| ||||| || | | || |||||||||||
Sbjct 1492 TATGAGAAAGAATCAGCCAAGTATTACAAAGATTTCCT-AGCTCAAGGTGTTCGTCCATC 1550
Query 1578 CGCTATCAAGAAGGATGAGCTTT 1600
||| ||||||| |||||||||||
Sbjct 1551 CGCGATCAAGAGGGATGAGCTTT 1573
> Ahg905006 jgi|Araly1|905006|Al_scaffold_0003_2134
Length=1428
Score = 791 bits (428), Expect = 0.0
Identities = 565/631 (90%), Gaps = 10/631 (2%)
Strand=Plus/Plus
Query 977 ACATTGTTGGACATAGATTGCCTAAATTTACTACTGAGCAGATAGCAAAACTCAAAAACT 1036
||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| | |||||
Sbjct 803 ACATTGTTGGACATAGATTACCTAAGTTTACCACTGAGCAGAAAGCAAAACTGAGAAACT 862
Query 1037 CAGCCGATTTCGTAGGGATCAATTACTATACTTCTACATTTTCAAAACACT-TGGAGAAG 1095
|||| ||||||||||||||||| ||||||||||| ||||||||||| || | ||||||||
Sbjct 863 CAGCTGATTTCGTAGGGATCAACTACTATACTTCCACATTTTCAAACCA-TATGGAGAAG 921
Query 1096 CCAAACCATGCAGAACCAAAATTTAAACAAGATTCTCTTGTTGAATGGAAAAATAAAAAT 1155
||||| |||||||||| || ||||||||||||||||||||||||||||||| ||||||||
Sbjct 922 CCAAATCATGCAGAACTAAGATTTAAACAAGATTCTCTTGTTGAATGGAAAGATAAAAAT 981
Query 1156 GTAAAC-AATATCACTATTGGTAGCAAGCCTGAAACCGGTCCA-TTGCCAGTTTATTCTA 1213
||||| || ||| ||||||||||||||||| |||| | | || | ||||||||||
Sbjct 982 ATAAACGAA-GTCAGTATTGGTAGCAAGCCTGCGACCGCT-GAGCTGGCGGTTTATTCTA 1039
Query 1214 CAGGCTTTAGAAAAGTTTTGAAATACGTCAAAGATAAATACGCAAATCCTGAAATTATCA 1273
||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1040 GAGGCTTTAGAAAAGTTTTGAAGTACGTCAAGGATAAATACGCAAATCCAGAAATTATCA 1099
Query 1274 TCATGGAAAACGGATATGGAGA-AAACCTTAAAGAGAACGATTCGGTTGAAAATGGTACT 1332
|||||||||| ||||||||||| ||| ||| ||| |||||| | |||| | |||||||
Sbjct 1100 TCATGGAAAATGGATATGGAGAGAAA-CTTGGAGACAACGATACAGTTGCAGTTGGTACT 1158
Query 1333 GCTGATTACAACAGGGAAAGTTATCTTAAGAAGCATCTTTGGAGTATGCACAAAGCTATT 1392
|||||||||||||| |||| ||||||||||| |||||||| ||||||| || ||||||||
Sbjct 1159 GCTGATTACAACAGAGAAACTTATCTTAAGAGGCATCTTTTGAGTATGTACGAAGCTATT 1218
Query 1393 TGCGAAGACAAGGTAAATGTTACAGGATATTTTGTATGGTCATTGATGGATAACTTTGAG 1452
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1219 TGCGAAGACAAGGTGAATGTTACAGGATATTTTGTATGGTCATTGCTGGATAACTTCGAG 1278
Query 1453 TGGCAAGATGGTTTTAAAAACAGATTTGGACTGTATTACATTGA-TTACAAAAACAACCT 1511
|||||||| || ||||||| |||||||||||| ||||||||||| || ||||||||||||
Sbjct 1279 TGGCAAGAAGGCTTTAAAACCAGATTTGGACTATATTACATTGACTT-CAAAAACAACCT 1337
Query 1512 CACACGTCATGAGAAAGTTTCGGGCAAGTATTATAGAGAATTCCTTAGTGAGGGAGTTCG 1571
||||||||||||||||||||| |||||||||||||||||||| |||||| | || |||||
Sbjct 1338 CACACGTCATGAGAAAGTTTCAGGCAAGTATTATAGAGAATTTCTTAGTCAAGGTGTTCG 1397
Query 1572 TCCATCCGCTATCAAGAAGGATGAGCTTTGA 1602
||||||||| |||||||||||||||||||||
Sbjct 1398 TCCATCCGCGATCAAGAAGGATGAGCTTTGA 1428
Score = 643 bits (348), Expect = 0.0
Identities = 417/451 (92%), Gaps = 2/451 (0%)
Strand=Plus/Plus
Query 455 GTATAATTCCGTTCGTGACTGTTTTTCATTGGGACACGCCACAAACTCTAGAGAATGAAT 514
||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 353 GTATAATTCCGTTTGTGACTGTTTTTCATTGGGACACTCCACAATCTCTAGAAAATGAAT 412
Query 515 ATGGGGGCTTCTTAAGCGCACACATTGTGAAAGATTTTCGGGAGTATGCTGAGTTTGTTT 574
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 413 ATGGCGGCTTCTTAAGCGCAAACATTGTGAAAGATTTTCGGGAGTATGCTGAGTATGTTT 472
Query 575 TCAAAGAATATGGTGGAAAAGTTAAACATTGGATCACTTTTAACGAGCCATGGGTTTTCG 634
|| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 473 TCCAAGAGTATGGTGGAAAAGTGAAGCATTGGATCACTTTTAACGAGCCATGGGTTTTCG 532
Query 635 CGCATGCCGGTTATGACGTTGGAAAGAAAGCACCTGGACGTTGTTCTCCTTACGCCAAGG 694
| || |||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 533 CACACGCCGGTTATGACGTGGGTAAGAAAGCTCCAGGACGTTGTTCTCCTTACGCCAAGG 592
Query 695 -ACGAAACTGTCAAGGGAGATTGTCTAGGCGGACGATCAGGTTATGAGGCTTATCTAGTC 753
| | ||| ||||||||||| || ||||| ||| ||||||||||||||||||||||||||
Sbjct 593 AAAG-AACCGTCAAGGGAGAATGCCTAGGTGGAAGATCAGGTTATGAGGCTTATCTAGTC 651
Query 754 AGTCACAACCTCCTCAACGCTCATGCAGAAGCCGTTGAAGCTTTTCGACAATGTGAAAAA 813
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 652 AGTCACAACCTGCTCAACGCTCACGCAGAAGCCGTTGAAGCTTTTCGACAATGCGAAAAA 711
Query 814 TGTAAGGGTGGAAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCACATGACTTT 873
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TGTAAAGGTGGGAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCACATGACTTT 771
Query 874 AAAGATGAACAAAGTGGTGCGACCATTGACC 904
|| |||| ||||| |||||||||| ||||||
Sbjct 772 AAGGATGCACAAAATGGTGCGACCGTTGACC 802
Score = 484 bits (262), Expect = 6e-136
Identities = 322/352 (91%), Gaps = 0/352 (0%)
Strand=Plus/Plus
Query 25 ATGTCTATTGGGCTGCTTTGGCTACTAATCATCGTAGGTCCGCTGGTAAATGCCGATGGA 84
||||| |||||||| |||| ||| ||||||||||| ||| | | ||||||||||||||||
Sbjct 1 ATGTCCATTGGGCTCCTTTTGCTCCTAATCATCGTCGGTTCTCCGGTAAATGCCGATGGA 60
Query 85 CCTGTTTGCCCACCGAAACCGTCGGACAAACTAAGCCGGGCACATTTTCCTAAAGGTTTT 144
|| ||||||||||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 61 CCGGTTTGCCCACCGACACCGTCCAACAAACTAAGCCGGGCACATTTTCCTGAAGGTTTC 120
Query 145 TTATTTGGCACAGCGACTGCGGCATATCAGGTTGAAGGTGCAGTGAATGAAACTTGTCGT 204
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TTATTTGGCACAGCGACTGCGGCATATCAGGTTGAAGGTGCAGTTAATGAAACTTGTCGT 180
Query 205 GGACCATCCGTATGGGATATCTATTGTAAAAAATATCCAGAAAAATGCAATGGCGATAAT 264
||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GGACCGTCCGTGTGGGATATCTATTGTAAGAAATATCCAGAAAAATGCAATGGCGATAAC 240
Query 265 GGTACTCAAGCTGTTGATTTCTTCTATCGTTACAAGGAAGATATTCAATTAATGAAGAAT 324
|||||||| || ||||| |||||||||||||| ||||||||| | |||||||||||||||
Sbjct 241 GGTACTCAGGCCGTTGAGTTCTTCTATCGTTATAAGGAAGATGTCCAATTAATGAAGAAT 300
Query 325 CTAAACACAGATTCCTTCAGATTATCTATCTCATGGACAAGAATTTTTCCTC 376
|| |||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 301 CTCAACACAGACGCCTTCAGATTATCTATCTCGTGGACGAGAATTTTTCCTC 352
> Ahg359476 jgi|Araly1|359476|fgenesh1_pg.C_scaffold_275000001
Length=729
Score = 691 bits (374), Expect = 0.0
Identities = 443/477 (93%), Gaps = 2/477 (0%)
Strand=Plus/Plus
Query 455 GTATAATTCCGTTCGTGACTGTTTTTCATTGGGACACGCCACAAACTCTAGAGAATGAAT 514
||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 251 GTATAATTCCGTTTGTGACTGTTTTTCATTGGGACACTCCACAATCTCTAGAAAATGAAT 310
Query 515 ATGGGGGCTTCTTAAGCGCACACATTGTGAAAGATTTTCGGGAGTATGCTGAGTTTGTTT 574
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 311 ATGGCGGCTTCTTAAGCGCAAACATTGTGAAAGATTTTCGGGAGTATGCTGAGTATGTTT 370
Query 575 TCAAAGAATATGGTGGAAAAGTTAAACATTGGATCACTTTTAACGAGCCATGGGTTTTCG 634
|| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 371 TCCAAGAGTATGGTGGAAAAGTGAAGCATTGGATCACTTTTAACGAGCCATGGGTTTTCG 430
Query 635 CGCATGCCGGTTATGACGTTGGAAAGAAAGCACCTGGACGTTGTTCTCCTTACGCCAAGG 694
| || |||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 431 CACACGCCGGTTATGACGTGGGTAAGAAAGCTCCAGGACGTTGTTCTCCTTACGCCAAGG 490
Query 695 -ACGAAACTGTCAAGGGAGATTGTCTAGGCGGACGATCAGGTTATGAGGCTTATCTAGTC 753
| | ||| ||||||||||| || ||||| ||| ||||||||||||||||||||||||||
Sbjct 491 AAAG-AACCGTCAAGGGAGAATGCCTAGGTGGAAGATCAGGTTATGAGGCTTATCTAGTC 549
Query 754 AGTCACAACCTCCTCAACGCTCATGCAGAAGCCGTTGAAGCTTTTCGACAATGTGAAAAA 813
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 550 AGTCACAACCTGCTCAACGCTCACGCAGAAGCCGTTGAAGCTTTTCGACAATGCGAAAAA 609
Query 814 TGTAAGGGTGGAAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCACATGACTTT 873
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TGTAAAGGTGGGAAGATCGGAATCGCACATAGTCCGGCTTGGTTTGAACCACATGACTTT 669
Query 874 AAAGATGAACAAAGTGGTGCGACCATTGACCGTGCACTTGACTTTATAATGGGATGG 930
|| |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 670 AAGGATGCACAAAATGGTGCGACCGTTGACCGTGCACTTGACTTTATAATGGGATGG 726
Score = 224 bits (121), Expect = 2e-57
Identities = 158/176 (90%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 1 ATGGTATTGCAAAAACTT-CCTCTCATGTCTATTGGGCTGCTTTGGCTACTAATCATCGT 59
|||| ||||| |||| || ||||||||||| |||||||| |||| ||| |||||||||||
Sbjct 1 ATGGCATTGC-AAAAGTTACCTCTCATGTCCATTGGGCTCCTTTTGCTCCTAATCATCGT 59
Query 60 AGGTCCGCTGGTAAATGCCGATGGACCTGTTTGCCCACCGAAACCGTCGGACAAACTAAG 119
||| | | |||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 60 CGGTTCTCCGGTAAATGCCGATGGACCGGTTTGCCCACCGACACCGTCCAACAAACTAAG 119
Query 120 CCGGGCACATTTTCCTAAAGGTTTTTTATTTGGCACAGCGACTGCGGCATATCAGG 175
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 120 CCGGGCACATTTTCCTGAAGGTTTCTTATTTGGCACAGCGACTGCGGCATATCAGG 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5