BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28550.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492420 jgi|Araly1|492420|fgenesh2_kg.7__1853__AT5G28550.1 699 0.0
> Ahg492420 jgi|Araly1|492420|fgenesh2_kg.7__1853__AT5G28550.1
Length=726
Score = 699 bits (378), Expect = 0.0
Identities = 482/530 (91%), Gaps = 15/530 (3%)
Strand=Plus/Plus
Query 335 AGATCACTAACCGTCTAGTTGAGGATGTAATTGCTAGTCCGTGGATTTCACCTCCAGAGC 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 AGATCACTAACCGTCTAGTTGAGGATGTAATTGCTAGTCCGTGGATTTCACCTCCAGAGC 268
Query 395 TCAAATTTTTATTTGCTTCATTTCACGATATCAGTGTAGCTTTCTACAATAATAAGCACC 454
|||||| | ||| ||||||||||||||||||| |||||| ||||||||| | ||||||||
Sbjct 269 TCAAATATCTATCTGCTTCATTTCACGATATCGGTGTAGATTTCTACAAGATTAAGCACC 328
Query 455 TAGAAAA-GGCTTCCATGGTGTTCAAGCTATGTATTAGAACAGTGTGGACTTGTGTTAGA 513
|| |||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 329 TA-AAAATGGCTTCCATGGCGTTCAAGATATGTATCAGAACAGTGTGGACTTGTGTTAGA 387
Query 514 CTCCTCTGTCAGATATATGTAAATAAGTCTGACCTATCTGAGGATTGTCTTCCCAAAGAA 573
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 388 CTCCTCTGTCAGATATATGTAAATAAGTCTGACCTATCTGAGGATTGTCTTCCCGAAGAA 447
Query 574 GCAATTATTGATTTTGTGAGTGAAGCATGTAGCAAATCTGCATTTTATCTAGATAATCTC 633
|||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 448 GCAATTGTTGATTTCGTGAGTGAAGCATGTAGCAAATCTGCATTTTATCTGGATGTTCTC 507
Query 634 CATCAACATGGTGCACGAGAAACCGAGAAGTTGCATGTGTTTATTCTAGAAAATTGGCCT 693
|| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||
Sbjct 508 CAGCAACATGGTGCACGAGAAATCGACAAGTTGCTTGTGTTTATTCTAGAAAATTGGTCT 567
Query 694 GAAGCTGAAGACCTCATCAAAAAGTTGCCAGACCCTACACCGATAGTAAAGCAATGGGTT 753
| ||||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||
Sbjct 568 GCAGCTGAAGACCTCATCAAAAAGTTGTCAGACCCTACGCCGATAATAAAACAATGGGTT 627
Query 754 AAG-C-TAGTACATGAGCTTTTCTTGGGATGTGCACAAAGGTGTAGCCGTGTAGGTATGA 811
||| | | |||||| |||||||||||||||||| |||||||||||| || | | ||
Sbjct 628 AAGGCCTGGTACATAAGCTTTTCTTGGGATGTGAACAAAGGTGTAG--GT--A--T--GA 679
Query 812 TCTCCCTCAACCATGTTTTTGATGTCCCTCATATAAGTGGCATACTGTGA 861
||| |||| ||||| || ||||||||| ||||||||||||||||||||
Sbjct 680 TCTACCTCTACCATCTT---GATGTCCCTGATATAAGTGGCATACTGTGA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5