BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28590.1
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489653 jgi|Araly1|489653|fgenesh2_kg.6__2787__AT5G28590.1 845 0.0
> Ahg489653 jgi|Araly1|489653|fgenesh2_kg.6__2787__AT5G28590.1
Length=654
Score = 845 bits (457), Expect = 0.0
Identities = 543/582 (93%), Gaps = 16/582 (3%)
Strand=Plus/Plus
Query 72 GAAAACTGGGCAATGTTTTACTCCACACATTGTTAATATAACTCCTGGTGAGGATGTGGC 131
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 GAAAACTGGGCAAAGTTTTACTCCACACATTGTTAATATAACTCCTGGTGAGGATGTGGC 146
Query 132 GGAGAAGATTGTTCTTTTCACTCAGCAAAGCAAGCATCAGTTATGTGTTCTTTCTGCATC 191
| |||| ||||| |||||| ||||||||||||||||| |||| || ||||||||||||||
Sbjct 147 GCAGAAAATTGTCCTTTTCGCTCAGCAAAGCAAGCATGAGTTGTGCGTTCTTTCTGCATC 206
Query 192 TGGCTCCATCTCTAATGCATCCTTGTCTCACCTTG-CATCAGGAACCAGTCACGGGGGTA 250
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 207 TGGCTCCATCTCTAATGCATCCTTGTCTCAC-TTGGCATCAGGAACCAGTCACGGTGGTA 265
Query 251 AAACTGGTGGCCTTAGCGTTTGTTTATCTAATTCAGATGGTCAGATCTTTGGTGGAGGAG 310
|||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 266 AAACTGGTGGCCTTAGTGTTTGTTTATCTAGTTCAGATGGTCAGATATTTGGTGGAGGAG 325
Query 311 TTGGGGGACTCCTAAAGGCTGCTGGTCCAGTCCAGGTGGTTCTTGGCACGTTTCAGCTAG 370
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 326 TTGGGGGACTCCTAAAGGCTGCTGGTCCAGTTCAGGTGGTTCTTGGCACGTTTCAGCTAG 385
Query 371 AGAAAAAGAAGGATGGAAGAAATGGTGCGAAAGGAGATGATGCTTCGGGAAGTAGAAACA 430
| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 386 AAAAAAAGAAGGATGGAAGAAATGGTGTGAAAGGAGATGATGCTTCGGGAAGTGGAAACA 445
Query 431 TGTTACCTTCTCCTTCTGGTACAGAATCTTTG-TTGGGCTACCATCCCGATATGGAATCT 489
||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||
Sbjct 446 TGTTACCTTCTCCTTCTGGCACAGAATCTTTGCTTGG-CTACCATCCTGATATGGAA--- 501
Query 490 TCCGGAAGAAATCCAAACGATGAGCATCATACTATTACTAGTAGTGCATTGGGTGGTGGA 549
|| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 502 -----AA----TCCAAACGATGAGCATCACACTATTACTAGTAGTGCATTGGGTGGTGGA 552
Query 550 GCTCATTTCATGATGAAACCACCTCAGGGCATGCACATGACACATGCCCGACCTTCTGAA 609
||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 553 GCTCATTTCATGATGCAACCATCTCAGGGCATGCAAATGACACATGCCCGACCTTCTGAA 612
Query 610 TGGGGCGGTACTGGGTATGATTTGTCAGGTAAAAGTAGCTAA 651
|||||||||||||||||||||||||||||||||| |||||||
Sbjct 613 TGGGGCGGTACTGGGTATGATTTGTCAGGTAAAATTAGCTAA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23864946042
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5