BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G28610.1

Length=488
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489654 jgi|Araly1|489654|fgenesh2_kg.6__2788__AT5G28610.1         604    1e-172


> Ahg489654 jgi|Araly1|489654|fgenesh2_kg.6__2788__AT5G28610.1
Length=450

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 393/423 (93%), Gaps = 11/423 (3%)
 Strand=Plus/Plus

Query  46   TAGACTCATCGCCAGAAAAGGAGATGGCAAAAA-CACATAAGCATAGAGGACTATTCCAC  104
            ||||||| ||||| |||||||||| || ||||| | |||||||||||||||||||| |||
Sbjct  38   TAGACTCGTCGCCGGAAAAGGAGAAGG-AAAAATCCCATAAGCATAGAGGACTATTTCAC  96

Query  105  CTCCACCACCACTCaaaagatgagaaagatgaagacaaaaagaaagaaggatcaaagaga  164
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  97   CTCCACCATCACTCAAAAGATGAGAAAGATGAAGACAAAAAGAAAGAAGGATCAAAGAGA  156

Query  165  gagaagatAGCTGCAGCAATGGTTGGTCTCGGAGCCACACTCAAGAAAGTTAAGCATCCA  224
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  157  GAGAAGATAGCTGCAGCAATGGTTGGTCTTGGAGCCACACTCAAGAAAGTTAAGCATCCG  216

Query  225  CGCCACCATggaagtggtggacaagaggaacaagaaggagcagcagaggaagaagaagta  284
            |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  217  CGCCACCATGGAAGCGGTGGAAAAGAGGAACAAGAAGGAGCAGCAGAGGAAGAAGAAGTA  276

Query  285  gaagaagaagaggaggaggaggaggaagatgatggtggagatgaagaagagggaggCAAG  344
            ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  277  GAAGAAGAAGAAGAAGAGGAAGAGGAAGATGATGGTGGAGATGAAGAAGAGGGAGGCAAG  336

Query  345  TTTAGTGCTTTCATTTCGATGATCGCCGAAGCATTTGAAGAATAGAAATTGTAATTTGTT  404
            |||||||||||||||||||||||||||||||||||||||||||||   ||||  |  || 
Sbjct  337  TTTAGTGCTTTCATTTCGATGATCGCCGAAGCATTTGAAGAATAGT--TTGT--T--GT-  389

Query  405  ATATTTTGTTTATTCAAACTTGCTATCAAATTTAGTATTTGTAATGTTTCCTTCTTAGCA  464
            || ||| |||||| | |||||| ||||||||||||||||||||| |||||| ||||||||
Sbjct  390  AT-TTT-GTTTATCCTAACTTGTTATCAAATTTAGTATTTGTAACGTTTCCCTCTTAGCA  447

Query  465  AAC  467
            |||
Sbjct  448  AAC  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17704193296


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5