BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28630.1
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489655 jgi|Araly1|489655|fgenesh2_kg.6__2789__AT5G28630.1 662 0.0
Ahg489654 jgi|Araly1|489654|fgenesh2_kg.6__2788__AT5G28610.1 246 1e-64
> Ahg489655 jgi|Araly1|489655|fgenesh2_kg.6__2789__AT5G28630.1
Length=573
Score = 662 bits (358), Expect = 0.0
Identities = 496/558 (89%), Gaps = 28/558 (5%)
Strand=Plus/Plus
Query 1 AATTCACGATTTGGgagaaagaactaaaaacaccaagaaaataaaaaaagagaaagagga 60
||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 1 AATTCACGATTTGAGAGAAAGAACTAAAAACATCAAGAAAA-AAAAAGAGAGAAAGAGGA 59
Query 61 tggagaaagagTTACATGAATCCAAGGTGGCTACTTACACCGAAAGAGGCATTGGATCAC 120
|||||||| | ||||||||||||| || ||||||||| | ||||| |||||| ||| |||
Sbjct 60 TGGAGAAACAATTACATGAATCCATGGAGGCTACTTATATCGAAAAAGGCATCGGAACAC 119
Query 121 ACGACTCATCGCCTGAAAAGGAGAAGGAAAAATCTCATAAGCATAGAGGA-TTATTCCA- 178
| ||||||||||| |||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 120 AAGACTCATCGCCGGAAAAGGAGAAGGAAAAATCCCATAAGCATAGAGGACTT-TTCCAT 178
Query 179 --CCTCCATCACTCaaaagatgagaaagatggagacaaaaagaaagaaggatcaaagaga 236
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 CTCCACCATCACTCAAAAGATGAGAAAGATGAAGACAAAAAGAAAGAAGGATCAAAGAGA 238
Query 237 gagaagatAGCTGCAGCAATGGTTGGTCTTGGAGCCACTTTTATGAAGAAGAAGCACAAA 296
||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |
Sbjct 239 GAGAAGATAGCTGCAGCAATGGTTGGTCTTGGAGCCACTCTTAAGAAGATTAAGCACGGA 298
Query 297 GGTGGTggaaaaaaggaaaaaagaggaggaggaggaggaaaagaggaagaaggaggagga 356
|| |||||||||||| ||||||||||||||||||||| || ||||| | ||||||| |
Sbjct 299 GGCGGTGGAAAAAAGAAAAAAAGAGGAGGAGGAGGAG-AA--GAGGA-G--GGAGGAG-A 351
Query 357 gaagaggagggagaagaagaagaggagtcgtcttcatcggaggaggaagaagaagaagaa 416
| |||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 352 -A-GAGGAGGGAGAAGAAGAAGAGGAGTC-T-T-CATCGGAGGAGGAAGAAGAAGAAG-- 404
Query 417 gaaggaggaggtggtggtggagatgaagaagagggaggaggCAAGTTTAGTGCTTTCATT 476
|| || | | |||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 405 GA-GGTG-A--TGGTGG-GGA--TGAAGAAGAGGGAGGAGGCAAGTTTAGTGCTTTCATT 457
Query 477 ACAATGATCGCCGAAGCCTTTGAAGAATGAAAATTTAATTTGTGATCACTTTCTTGTCAt 536
||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| || |||
Sbjct 458 TCAATGATCGCCGAAGTCTTTGAAGAATGATAATTTCATTTGTGATCAGTTTGTTATCAG 517
Query 537 ttttttttttttCAAATT 554
||||||||||| ||||||
Sbjct 518 TTTTTTTTTTT-CAAATT 534
> Ahg489654 jgi|Araly1|489654|fgenesh2_kg.6__2788__AT5G28610.1
Length=450
Score = 246 bits (133), Expect = 1e-64
Identities = 164/178 (92%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 101 CGAAAGAGGCATTGGATCAC-ACGACTCATCGCCTGAAAAGGAGAAGGAAAAATCTCATA 159
|||| ||||||| ||| ||| | ||||| ||||| |||||||||||||||||||| ||||
Sbjct 18 CGAACGAGGCATCGGAACACTA-GACTCGTCGCCGGAAAAGGAGAAGGAAAAATCCCATA 76
Query 160 AGCATAGAGGATTATTCCACCT---CCATCACTCaaaagatgagaaagatggagacaaaa 216
||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 77 AGCATAGAGGACTATTTCACCTCCACCATCACTCAAAAGATGAGAAAGATGAAGACAAAA 136
Query 217 agaaagaaggatcaaagagagagaagatAGCTGCAGCAATGGTTGGTCTTGGAGCCAC 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 AGAAAGAAGGATCAAAGAGAGAGAAGATAGCTGCAGCAATGGTTGGTCTTGGAGCCAC 194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22645012698
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5