BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28630.1 Length=619 Score E Sequences producing significant alignments: (Bits) Value Ahg489655 jgi|Araly1|489655|fgenesh2_kg.6__2789__AT5G28630.1 662 0.0 Ahg489654 jgi|Araly1|489654|fgenesh2_kg.6__2788__AT5G28610.1 246 1e-64 > Ahg489655 jgi|Araly1|489655|fgenesh2_kg.6__2789__AT5G28630.1 Length=573 Score = 662 bits (358), Expect = 0.0 Identities = 496/558 (89%), Gaps = 28/558 (5%) Strand=Plus/Plus Query 1 AATTCACGATTTGGgagaaagaactaaaaacaccaagaaaataaaaaaagagaaagagga 60 ||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct 1 AATTCACGATTTGAGAGAAAGAACTAAAAACATCAAGAAAA-AAAAAGAGAGAAAGAGGA 59 Query 61 tggagaaagagTTACATGAATCCAAGGTGGCTACTTACACCGAAAGAGGCATTGGATCAC 120 |||||||| | ||||||||||||| || ||||||||| | ||||| |||||| ||| ||| Sbjct 60 TGGAGAAACAATTACATGAATCCATGGAGGCTACTTATATCGAAAAAGGCATCGGAACAC 119 Query 121 ACGACTCATCGCCTGAAAAGGAGAAGGAAAAATCTCATAAGCATAGAGGA-TTATTCCA- 178 | ||||||||||| |||||||||||||||||||| ||||||||||||||| || ||||| Sbjct 120 AAGACTCATCGCCGGAAAAGGAGAAGGAAAAATCCCATAAGCATAGAGGACTT-TTCCAT 178 Query 179 --CCTCCATCACTCaaaagatgagaaagatggagacaaaaagaaagaaggatcaaagaga 236 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 179 CTCCACCATCACTCAAAAGATGAGAAAGATGAAGACAAAAAGAAAGAAGGATCAAAGAGA 238 Query 237 gagaagatAGCTGCAGCAATGGTTGGTCTTGGAGCCACTTTTATGAAGAAGAAGCACAAA 296 ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| | Sbjct 239 GAGAAGATAGCTGCAGCAATGGTTGGTCTTGGAGCCACTCTTAAGAAGATTAAGCACGGA 298 Query 297 GGTGGTggaaaaaaggaaaaaagaggaggaggaggaggaaaagaggaagaaggaggagga 356 || |||||||||||| ||||||||||||||||||||| || ||||| | ||||||| | Sbjct 299 GGCGGTGGAAAAAAGAAAAAAAGAGGAGGAGGAGGAG-AA--GAGGA-G--GGAGGAG-A 351 Query 357 gaagaggagggagaagaagaagaggagtcgtcttcatcggaggaggaagaagaagaagaa 416 | |||||||||||||||||||||||||| | | |||||||||||||||||||||||| Sbjct 352 -A-GAGGAGGGAGAAGAAGAAGAGGAGTC-T-T-CATCGGAGGAGGAAGAAGAAGAAG-- 404 Query 417 gaaggaggaggtggtggtggagatgaagaagagggaggaggCAAGTTTAGTGCTTTCATT 476 || || | | |||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 405 GA-GGTG-A--TGGTGG-GGA--TGAAGAAGAGGGAGGAGGCAAGTTTAGTGCTTTCATT 457 Query 477 ACAATGATCGCCGAAGCCTTTGAAGAATGAAAATTTAATTTGTGATCACTTTCTTGTCAt 536 ||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| || ||| Sbjct 458 TCAATGATCGCCGAAGTCTTTGAAGAATGATAATTTCATTTGTGATCAGTTTGTTATCAG 517 Query 537 ttttttttttttCAAATT 554 ||||||||||| |||||| Sbjct 518 TTTTTTTTTTT-CAAATT 534 > Ahg489654 jgi|Araly1|489654|fgenesh2_kg.6__2788__AT5G28610.1 Length=450 Score = 246 bits (133), Expect = 1e-64 Identities = 164/178 (92%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 101 CGAAAGAGGCATTGGATCAC-ACGACTCATCGCCTGAAAAGGAGAAGGAAAAATCTCATA 159 |||| ||||||| ||| ||| | ||||| ||||| |||||||||||||||||||| |||| Sbjct 18 CGAACGAGGCATCGGAACACTA-GACTCGTCGCCGGAAAAGGAGAAGGAAAAATCCCATA 76 Query 160 AGCATAGAGGATTATTCCACCT---CCATCACTCaaaagatgagaaagatggagacaaaa 216 ||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 77 AGCATAGAGGACTATTTCACCTCCACCATCACTCAAAAGATGAGAAAGATGAAGACAAAA 136 Query 217 agaaagaaggatcaaagagagagaagatAGCTGCAGCAATGGTTGGTCTTGGAGCCAC 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 AGAAAGAAGGATCAAAGAGAGAGAAGATAGCTGCAGCAATGGTTGGTCTTGGAGCCAC 194 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22645012698 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5