BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28640.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942456 jgi|Araly1|942456|scaffold_603000.1 1118 0.0
> Ahg942456 jgi|Araly1|942456|scaffold_603000.1
Length=670
Score = 1118 bits (605), Expect = 0.0
Identities = 651/673 (97%), Gaps = 3/673 (0%)
Strand=Plus/Plus
Query 253 tatataaaatagcaaaagaaatGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCTG 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATATAAAATAGCAAAAGAAATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCTG 60
Query 313 GTTACTACCCCAGCAATGTTACCTCTGATCATATCCAACAGTACTTGGACGAAAACAAAT 372
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GTTACTACCCCAGCAATGTTACCTCTGATCATATCCAACAGTACTTGGACGAGAACAAAT 120
Query 373 CGTTGATTCTGAAGATTGTTGAGTCTCAAAACTCTGGAAAGCTTAGCGAATGCGCCGAGA 432
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 121 CGTTGATTCTGAAGATTGTTGAGTCTCAAAACTCAGGAAAGCTTAGCGAGTGCGCCGAGA 180
Query 433 ATCAAGCAAGGCTTCAACGCAACCTAATGTACCTAGCTGCAATAGCAGATTCTCAGCCTC 492
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 ATCAGGCAAGACTTCAACGCAACCTAATGTACTTAGCTGCAATAGCAGATTCTCAGCCTC 240
Query 493 AGCCACCAAGTGTGCATAGCCAGTATGGATCTGCTGGTGGTGGGATGATTCAGGGAGAAG 552
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCCTCCAAGTGTGCATAGCCAGTATGGATCTGCTGGTGGTGGGATGATTCAGGGAGAAG 300
Query 553 GAGGGTCACACTATTTGCAGCAGCAACAAGCGACTCAACAGCAACAGATGACTCAGCAGT 612
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 301 GAGGGTCACACTATTTGCAGCAGCAACAAGCGACTCAGCAGCAACAGATGACTCAACAGT 360
Query 613 CTCTAATGGCGGCTCGATCTTCAATGTTGTATGCTcagcaacagcagcagcagcagcCTT 672
||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||
Sbjct 361 CTCTAATGGCGGCTCGATCCTCAATGTTGTATGCTCAGCAGCAGCAGCA--A-CAGCCTT 417
Query 673 ACGCGACGCTTCAGCATCAGCAATTGCACCATAGCCAGCTTGGAATGAGCTCGAGCAGCG 732
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACGCAACGCTTCAGCATCAGCAATTGCACCATAGCCAGCTTGGAATGAGCTCGAGCAGCG 477
Query 733 GAGGAGGAGGAAGCAGTGGTCTCCATATCCTTCAGGGAGAGGCTGGTGGGTTTCATGATT 792
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 478 GAGGAGGAGGAAGCAGTGGTCTCCATATCCTTCAAGGAGAGGCTGGGGGGTTTCATGATT 537
Query 793 TTGGCCGTGGGAAGCCGGAAATGGGAAGTGGTGGTGGCGGTGAAGGCAGAGGAGGAAGTT 852
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTGGCCGTGGGAAGCCCGAAATGGGAAGTGGTGGTGGCGGTGAAGGCAGAGGAGGAAGTT 597
Query 853 CAGGGGATGGTGGAGAAACCCTTTACTTGAAATCATCAGATGATGGGAATTGAAAGAGTG 912
|||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 CAGGTGATGGTGGCGAAACCCTTTACTTGAAATCATCAGATGATGGGAATTAAAAGAGTG 657
Query 913 TGGCACAAGGAAT 925
||||||||||||
Sbjct 658 AGGCACAAGGAAT 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5