BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28646.1
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894792 jgi|Araly1|894792|Al_scaffold_0006_2788 874 0.0
> Ahg894792 jgi|Araly1|894792|Al_scaffold_0006_2788
Length=624
Score = 874 bits (473), Expect = 0.0
Identities = 575/622 (92%), Gaps = 15/622 (2%)
Strand=Plus/Plus
Query 78 ATGAGAAGAGAAGTTTTTGAGTCGGTGAGCACCAATGCTTCTAATGAAAGGGTTCACGTG 137
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAAGAGAAGTTGTTGAGTCGGTGAGCACCAATGCTTCTAATGAAAGGGTTCACGTG 60
Query 138 GCTCCCAAAATAGCGGCAGAGGAACAAGATTATGAGGAGAAAGAATGCACTGAGGAGAAT 197
|||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 61 GCTCCCAAGATAGCTGCAGAGGAAGAAGATTATGAGGTGAAAGAATGCACTGAGGAGAAT 120
Query 198 TCTCTCTCTCAGAATCATAAATCTTCTAATGTAATCACAGAGAATGATTCGAAGAAGAAG 257
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 121 TCTCTCTCTCTGAATCATAAATCTTCTAATGTAATCAGAGAGAATGATTTGAAGAAGAAG 180
Query 258 AATTTGGATGAAGAGGATGATTGTTCTGTTGCTTCTTCGATGAAGAATGCTAAGTCTAAA 317
||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 181 CATTTGGATGAAGAAGATGATTGTTCTGTCGCTTCTTCGGTGAAGAATGCTAAGTCTAAA 240
Query 318 GTAACTCATGGAACCGCTCCACGATTTAGGAGTGCTCAGCGCGCTGAGAAACGAAAAGAG 377
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 GTAACTCATGGAACCGCTCCCCGATTTAGGAGTGCTCAGCGAGCTGAGAAACGCAAAGAG 300
Query 378 TATTACCAAAAGCTTGAAGAGAAACACCAAGCACTTGAAGCTGAAAGGATCGAGCTCGAA 437
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 301 TATTATCAAAAGCTTGAAGAGAAACACCAAGCACTTGAAGCCGAAAGGATCGAGCTTGAA 360
Query 438 CAAAGACAAAAGG-AAGAA-C-----A-A-GAA---G---CAGCTATTAAACAGCTTCGG 482
||||| ||||||| ||||| | | | ||| | |||| |||||||||||||||
Sbjct 361 CAAAGGCAAAAGGCAAGAATCTTTTTAGAAGAACAAGAAGCAGCCATTAAACAGCTTCGG 420
Query 483 AAAAACCTTAAGTTTAAGGCTAATCCTGTTCCTGACTTCTATTACCAACGACCTCCCGTG 542
|||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 421 AAAAACCTTAAGTTTAAGGCTAATCCCGTTCCCGACTTCTATTACCAAGGACCTCCCGTG 480
Query 543 AAACCAGAGCTTAAGAAGTTTCCTCTGACGCGTCCTAAGTCGCCGAAACTCAATCTGTCC 602
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 481 AAACCAGAGCTTAAGAAGTTTCCTTTGACGCGTCCAAAGTCGCCGAAACTCAATCTGTCC 540
Query 603 AGGAGAAAGAGTTGCAGCGATGCGATTACCTCGTCTGGTGAAGAGAATTCGAACTCACAG 662
|||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 CGGAGAAAGAGCTGTAGCGATGCGATTACCTCGTCTGGTGAAGAGAATTCGAAGTCACAG 600
Query 663 AATCGCCAGAGTGTGGTAGAAT 684
|| ||||| || ||||||||||
Sbjct 601 AACCGCCACAGCGTGGTAGAAT 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48339858756
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5