BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28650.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489657 jgi|Araly1|489657|fgenesh2_kg.6__2791__AT5G28650.1 1447 0.0
> Ahg489657 jgi|Araly1|489657|fgenesh2_kg.6__2791__AT5G28650.1
Length=1025
Score = 1447 bits (783), Expect = 0.0
Identities = 939/1012 (93%), Gaps = 19/1012 (2%)
Strand=Plus/Plus
Query 257 AAA-ATGGAAGAAGTTGAAGCTGCAAACAAAGCAGCAGTGGAAAGTTGTCATGGAGTATT 315
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 6 AAACATGGAAGAAGTTGAAGCTGCAAACAAAGCAGCAGTGGAAAGCTGTAATGGAGTATT 65
Query 316 GAATCTCTTATCACAACAAACCAATGATTCCAAATCAATAATGGTTGAAACAAGAGAAGC 375
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 66 GAATCTCTTATCACAACAAACCAATGATTCCAAATCCATAATGGTTGAAACAAGAGAAGC 125
Query 376 TGTTTGCAAGTTCAAGAGAGTCTCCTCTCTTTT-GTCTAGAGGGTTAGGTCAAAGGAAGA 434
|||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 126 AGTTTCCAAGTTCAAGAGAGTCTCCTCTCTTTTAG-CTAGAGGGTTAGGTCAAAGGAAGA 184
Query 435 TAAAGAAACTCAACAACAACAACTACAAGTTTAGCTCTTCTTTGTTGCCACAACACATGT 494
| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 185 TTAAGAAACT------CAACAACTACAAGTTTAGCTCTTCTTTGTTGCCTCAACACATGT 238
Query 495 TTTTGGAGAGTCCTGTTTGCAGTAATAATGCTATAAGTGGTTGTATTCCAATTCTAGCAC 554
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 239 TTTTGGAGAGTCCCATTTGCAGTAATAATGCTATAAGTGGTAGTATTCCAGTTCTAGCAC 298
Query 555 CAAAGCCTCTTCAGATTGTACCAGCTGGTCCTCCTCCATTGATGTTGTTTAACCAGAATA 614
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 299 CAAAGCCTCTTCAGATTGTACCAGCAAGTCATCCTCCATTGATGTTGTTTAACCAGAAAA 358
Query 615 TGTGTCTTGATAAGTCGTTTCTCGAGCTGAAGCCACCCTCTTCACGAGCTGTTGATCCAA 674
||||| |||| ||||| ||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 359 TGTGTGTTGACAAGTCCTTTCTCGAGCTAAAGCCACCGTCTTTTCGAGCTGTTGATCCAA 418
Query 675 AACCTTATCAGTTTATTCATACCCATCAGCAAGGAGTGTACTCAAGGAGCAAAAGTGGTT 734
||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 419 AACCTTATCAGGTTATTCATAACCATCAGCAAGGAGTGTACTCTAGGAGCAAAAGTGGTT 478
Query 735 TGAATCTAAAGTTTGATGGGTCTATTGGTGCTAGTTGTTATTCACCAAGTATATCAAATG 794
| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 479 TAAATCTAAAGTTTGATGGGTCTGGTGGTGTTAGTTGTTATTCACCAAGTATGTCAAATG 538
Query 795 GGTCAAGATCGTTTGTTTCATCTCTTAGTATGGATGGTAGTGTGACGGATTACGATA-GA 853
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 539 GATCAAGATCGTTTGTTTCATCTCTTAGTATGGATGGTAGTGTGACAGATTACGATATG- 597
Query 854 AACTCTTTTCATTTGATTGGATTACCTCAAGGTTCCGATCATATATCGCAACATTCTAGG 913
||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 598 AACTCGTTTCATTTAATCGGATTACCTCAAGGATCCGATCATATATCGCAACATTCTAGG 657
Query 914 AGGACTAGTTGCTCTGGTAGTTTAAAATGTGGAAGTAAAAGCAAATGCCATTGTTCCAAG 973
||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 658 AGGACTAGTTGCTCTGGTAGTTTGAAATGTGGAAGTAGAAGCAAATGTCATTGTTCCAAG 717
Query 974 AAAAGG-AAA---T--TAAGGGTGAAACGATCGATTAAAGTACCGGCAATCAGTAACAAG 1027
|||||| ||| | |||||||||||||| | || | ||||||||||||||||||||||
Sbjct 718 AAAAGGAAAAGTGTCCTAAGGGTGAAACGAACAATCAGAGTACCGGCAATCAGTAACAAG 777
Query 1028 ATTGCGGACATACCTCCCGATGAATATTCATGGAGGAAATACGGACAAAAGCCGATTAAG 1087
|||||||| |||||||| ||||||||||| |||||||| || ||||| |||||||| |||
Sbjct 778 ATTGCGGATATACCTCCTGATGAATATTCGTGGAGGAAGTATGGACAGAAGCCGATAAAG 837
Query 1088 GGTTCTCCTCATCCTAGGGGATACTATAAATGTAGCAGTGTGCGCGGTTGTCCAGCGAGG 1147
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 GGTTCTCCACATCCTAGGGGATACTATAAATGTAGCAGTGTGCGCGGTTGTCCAGCAAGG 897
Query 1148 AAGCATGTTGAGCGATGTGTAGAAGAAACTTCGATGCTT-ATTGTGACTTATGAAGGCGA 1206
||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 898 AAGCATGTTGAGCGATGTGTAGATGAAACTTCGATG-TTAATTGTGACTTATGAAGGCGA 956
Query 1207 GCATAACCATTCAAGAATACTCTCTTCTCAATCAGCTCATACTTGATTGATT 1258
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 957 GCATAACCATTCAAGAATACTCTCTTCTCAATCAGCTCATACCTGATTGATT 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5