BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28664.1 Length=1365 Score E Sequences producing significant alignments: (Bits) Value Ahg323065 jgi|Araly1|323065|fgenesh1_pm.C_scaffold_5000609 627 8e-179 Ahg942705 jgi|Araly1|942705|scaffold_603249.1 351 6e-96 Ahg900106 jgi|Araly1|900106|Al_scaffold_0004_756 278 1e-73 Ahg323064 jgi|Araly1|323064|fgenesh1_pm.C_scaffold_5000608 75.0 1e-12 > Ahg323065 jgi|Araly1|323065|fgenesh1_pm.C_scaffold_5000609 Length=813 Score = 627 bits (339), Expect = 8e-179 Identities = 428/472 (91%), Gaps = 2/472 (0%) Strand=Plus/Plus Query 838 TATTATCTCGTTGATTCTAGCTATCCAAACAAATAAGAATTTCTGGCTCCTTATAGATCA 897 |||||||| ||||||||| | |||||||||||| |||| ||| ||||||||||||||||| Sbjct 343 TATTATCTTGTTGATTCTGGTTATCCAAACAAACAAGAGTTTTTGGCTCCTTATAGATCA 402 Query 898 TCCCGAAACCGCGTTGTGAGATATCATATGTCTCAATTCTATTATGGTCCTCCTCCTAGG 957 || |||||||| |||||||||||||||||||| |||||||||| |||||||||||| ||| Sbjct 403 TCACGAAACCGAGTTGTGAGATATCATATGTCACAATTCTATTCTGGTCCTCCTCCAAGG 462 Query 958 AATACACATGAATTATTCAACCAATGTCACACATCTTTACGTTCTGTTATCGAGAGAACT 1017 |||| ||||||| | ||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 463 AATAAACATGAACTGTTCAACCAATGTCACGCATCTTTACGTTCGGTTATCGAGAGAACT 522 Query 1018 TTTGGAGTTTGGAAGAAAAAATGGAGAATTATTTCTGATTTTCCAAGATATAATGTTCAC 1077 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 523 TTTGGAGTTTGGAAGAAAAAATGGAGGATTATTTCTGATTTCCCAAGATATAATGTTCAC 582 Query 1078 ATTCAAAAAAGAGT-GATAATGGCTACAATGAGATTACATAATTTTATGAGAAGTTCAAA 1136 |||||||||||||| | ||||||||||| || ||||||||||||| || |||| |||||| Sbjct 583 ATTCAAAAAAGAGTAG-TAATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAA 641 Query 1137 TTTTTTGGATTCAGATTTTGTAGATGTAATGACAGAAACAAATATAAACAACCGAGATTT 1196 ||| | ||| ||||||||| ||||||||||||||||||||||||||||||| | ||||| Sbjct 642 TTTCTCAGATGCAGATTTTGCAGATGTAATGACAGAAACAAATATAAACAACGGTGATTT 701 Query 1197 TGAGCATGATGTAAGCGACATGGATGCAGCATAGTTAGCAGATGGAGAACATATGACGCA 1256 ||||||||||||| | |||||||||||| || ||||||||||||||||| |||||||||| Sbjct 702 TGAGCATGATGTATGTGACATGGATGCAACAGAGTTAGCAGATGGAGAATATATGACGCA 761 Query 1257 AATAAGAGACAATATTGAAAATATTTTATGGAAAAATCAAAGTAGTCGATAA 1308 ||||||||||||||||| |||||| |||||| |||||||| || | ||||| Sbjct 762 AATAAGAGACAATATTGCAAATATGTTATGGGGAAATCAAAATAATAGATAA 813 > Ahg942705 jgi|Araly1|942705|scaffold_603249.1 Length=2035 Score = 351 bits (190), Expect = 6e-96 Identities = 254/285 (89%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 1033 AAAAAATGGAGAATTATTTCTGATTTTCCAAGATATAATGTTCACATTCAAAAAAGAGT- 1091 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1740 AAAAAATGGAGGATTATTTCTGATTTCCCAAGATATAATGTTCACATTCAAAAAAGAGTA 1799 Query 1092 GATAATGGCTACAATGAGATTACATAATTTTATGAGAAGTTCAAATTTTTTGGATTCAGA 1151 | ||||||||||| || ||||||||||||| || |||| ||||||||| | ||| |||| Sbjct 1800 G-TAATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAATTTCTCAGATGCAGA 1858 Query 1152 TTTTGTAGATGTAATGACAGAAACAAATATAAACAACCGAGATTTTGAGCATGATGTAAG 1211 ||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1859 TTTCGCAGATGTAGTGACAGAAACAAATATAAACAATGGAGATTTTGAGCATGATGTAGG 1918 Query 1212 CGACATGGATGCAGCATAGTTAGCAGATGGAGAACATATGACGCAAATAAGAGACAATAT 1271 ||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||| Sbjct 1919 TGACATGGATGCAGCAGAATTAGCAGATGGAGAACATATGACGGAAATAAAAGACAATAT 1978 Query 1272 TGAAAATATTTTATGGAAAAATCAAAGTAGTCGATAATA-TTTTT 1315 || |||||| |||||| ||||||||| || | ||||||| ||||| Sbjct 1979 TGCAAATATGTTATGGGAAAATCAAAATAATAGATAATACTTTTT 2023 > Ahg900106 jgi|Araly1|900106|Al_scaffold_0004_756 Length=213 Score = 278 bits (150), Expect = 1e-73 Identities = 192/213 (90%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 1096 ATGGCTACAATGAGATTACATAATTTTATGAGAAGTTCAAATTTTTTGGATTCAGATTTT 1155 ||||||||| || ||||||||||||| || |||| ||||||||| | ||| ||||||| Sbjct 1 ATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAATTTCTCAGATGCAGATTTC 60 Query 1156 GTAGATGTAATGACAGAAACAAATATAAACAACCGAGATTTTGAGCATGATGTAAGCGAC 1215 | ||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| Sbjct 61 GCAGATGTAATGACAGAAACAAATATAAACAACGGAGATTTTGAGCATGATGTAGGTGAC 120 Query 1216 ATGGATGCAGCATAGTTAGCAGATGGAGAACATATGACGCAAATAAGAGACAATATTGAA 1275 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 121 ATGGATGCAGCAGAGTTAGCAGATGGAGAACATATGACGCAAATAAGAGACAATATTGCA 180 Query 1276 AATATTTTATGGAAAAATCAAAGTAGTCGATAA 1308 ||||| |||||| ||||||||| || | ||||| Sbjct 181 AATATGTTATGGGAAAATCAAAATAATAGATAA 213 > Ahg323064 jgi|Araly1|323064|fgenesh1_pm.C_scaffold_5000608 Length=1227 Score = 75.0 bits (40), Expect = 1e-12 Identities = 80/98 (82%), Gaps = 7/98 (7%) Strand=Plus/Plus Query 35 ATGTAATCTAATCGTCGACGGAACACAAATCCTTCCACAAGAATCG-GTTCAACTCATCC 93 |||| |||||||||||||||||||||||||||||||| || | | ||||||||||||| Sbjct 1 ATGTCATCTAATCGTCGACGGAACACAAATCCTTCCATAACTA-CAAGTTCAACTCATCC 59 Query 94 T---GAAGTTTCAGCTCCTCCCTCC-GAAACAACAGTG 127 ||| ||| ||||||| | | |||||||||||| Sbjct 60 CAACGAAACATCAACTCCTCC-TACAGAAACAACAGTG 96 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51084708780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5