BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28664.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323065 jgi|Araly1|323065|fgenesh1_pm.C_scaffold_5000609 627 8e-179
Ahg942705 jgi|Araly1|942705|scaffold_603249.1 351 6e-96
Ahg900106 jgi|Araly1|900106|Al_scaffold_0004_756 278 1e-73
Ahg323064 jgi|Araly1|323064|fgenesh1_pm.C_scaffold_5000608 75.0 1e-12
> Ahg323065 jgi|Araly1|323065|fgenesh1_pm.C_scaffold_5000609
Length=813
Score = 627 bits (339), Expect = 8e-179
Identities = 428/472 (91%), Gaps = 2/472 (0%)
Strand=Plus/Plus
Query 838 TATTATCTCGTTGATTCTAGCTATCCAAACAAATAAGAATTTCTGGCTCCTTATAGATCA 897
|||||||| ||||||||| | |||||||||||| |||| ||| |||||||||||||||||
Sbjct 343 TATTATCTTGTTGATTCTGGTTATCCAAACAAACAAGAGTTTTTGGCTCCTTATAGATCA 402
Query 898 TCCCGAAACCGCGTTGTGAGATATCATATGTCTCAATTCTATTATGGTCCTCCTCCTAGG 957
|| |||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct 403 TCACGAAACCGAGTTGTGAGATATCATATGTCACAATTCTATTCTGGTCCTCCTCCAAGG 462
Query 958 AATACACATGAATTATTCAACCAATGTCACACATCTTTACGTTCTGTTATCGAGAGAACT 1017
|||| ||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 463 AATAAACATGAACTGTTCAACCAATGTCACGCATCTTTACGTTCGGTTATCGAGAGAACT 522
Query 1018 TTTGGAGTTTGGAAGAAAAAATGGAGAATTATTTCTGATTTTCCAAGATATAATGTTCAC 1077
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 523 TTTGGAGTTTGGAAGAAAAAATGGAGGATTATTTCTGATTTCCCAAGATATAATGTTCAC 582
Query 1078 ATTCAAAAAAGAGT-GATAATGGCTACAATGAGATTACATAATTTTATGAGAAGTTCAAA 1136
|||||||||||||| | ||||||||||| || ||||||||||||| || |||| ||||||
Sbjct 583 ATTCAAAAAAGAGTAG-TAATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAA 641
Query 1137 TTTTTTGGATTCAGATTTTGTAGATGTAATGACAGAAACAAATATAAACAACCGAGATTT 1196
||| | ||| ||||||||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 642 TTTCTCAGATGCAGATTTTGCAGATGTAATGACAGAAACAAATATAAACAACGGTGATTT 701
Query 1197 TGAGCATGATGTAAGCGACATGGATGCAGCATAGTTAGCAGATGGAGAACATATGACGCA 1256
||||||||||||| | |||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 702 TGAGCATGATGTATGTGACATGGATGCAACAGAGTTAGCAGATGGAGAATATATGACGCA 761
Query 1257 AATAAGAGACAATATTGAAAATATTTTATGGAAAAATCAAAGTAGTCGATAA 1308
||||||||||||||||| |||||| |||||| |||||||| || | |||||
Sbjct 762 AATAAGAGACAATATTGCAAATATGTTATGGGGAAATCAAAATAATAGATAA 813
> Ahg942705 jgi|Araly1|942705|scaffold_603249.1
Length=2035
Score = 351 bits (190), Expect = 6e-96
Identities = 254/285 (89%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 1033 AAAAAATGGAGAATTATTTCTGATTTTCCAAGATATAATGTTCACATTCAAAAAAGAGT- 1091
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1740 AAAAAATGGAGGATTATTTCTGATTTCCCAAGATATAATGTTCACATTCAAAAAAGAGTA 1799
Query 1092 GATAATGGCTACAATGAGATTACATAATTTTATGAGAAGTTCAAATTTTTTGGATTCAGA 1151
| ||||||||||| || ||||||||||||| || |||| ||||||||| | ||| ||||
Sbjct 1800 G-TAATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAATTTCTCAGATGCAGA 1858
Query 1152 TTTTGTAGATGTAATGACAGAAACAAATATAAACAACCGAGATTTTGAGCATGATGTAAG 1211
||| | ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1859 TTTCGCAGATGTAGTGACAGAAACAAATATAAACAATGGAGATTTTGAGCATGATGTAGG 1918
Query 1212 CGACATGGATGCAGCATAGTTAGCAGATGGAGAACATATGACGCAAATAAGAGACAATAT 1271
||||||||||||||| | |||||||||||||||||||||||| |||||| |||||||||
Sbjct 1919 TGACATGGATGCAGCAGAATTAGCAGATGGAGAACATATGACGGAAATAAAAGACAATAT 1978
Query 1272 TGAAAATATTTTATGGAAAAATCAAAGTAGTCGATAATA-TTTTT 1315
|| |||||| |||||| ||||||||| || | ||||||| |||||
Sbjct 1979 TGCAAATATGTTATGGGAAAATCAAAATAATAGATAATACTTTTT 2023
> Ahg900106 jgi|Araly1|900106|Al_scaffold_0004_756
Length=213
Score = 278 bits (150), Expect = 1e-73
Identities = 192/213 (90%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 1096 ATGGCTACAATGAGATTACATAATTTTATGAGAAGTTCAAATTTTTTGGATTCAGATTTT 1155
||||||||| || ||||||||||||| || |||| ||||||||| | ||| |||||||
Sbjct 1 ATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAATTTCTCAGATGCAGATTTC 60
Query 1156 GTAGATGTAATGACAGAAACAAATATAAACAACCGAGATTTTGAGCATGATGTAAGCGAC 1215
| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 61 GCAGATGTAATGACAGAAACAAATATAAACAACGGAGATTTTGAGCATGATGTAGGTGAC 120
Query 1216 ATGGATGCAGCATAGTTAGCAGATGGAGAACATATGACGCAAATAAGAGACAATATTGAA 1275
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 ATGGATGCAGCAGAGTTAGCAGATGGAGAACATATGACGCAAATAAGAGACAATATTGCA 180
Query 1276 AATATTTTATGGAAAAATCAAAGTAGTCGATAA 1308
||||| |||||| ||||||||| || | |||||
Sbjct 181 AATATGTTATGGGAAAATCAAAATAATAGATAA 213
> Ahg323064 jgi|Araly1|323064|fgenesh1_pm.C_scaffold_5000608
Length=1227
Score = 75.0 bits (40), Expect = 1e-12
Identities = 80/98 (82%), Gaps = 7/98 (7%)
Strand=Plus/Plus
Query 35 ATGTAATCTAATCGTCGACGGAACACAAATCCTTCCACAAGAATCG-GTTCAACTCATCC 93
|||| |||||||||||||||||||||||||||||||| || | | |||||||||||||
Sbjct 1 ATGTCATCTAATCGTCGACGGAACACAAATCCTTCCATAACTA-CAAGTTCAACTCATCC 59
Query 94 T---GAAGTTTCAGCTCCTCCCTCC-GAAACAACAGTG 127
||| ||| ||||||| | | ||||||||||||
Sbjct 60 CAACGAAACATCAACTCCTCC-TACAGAAACAACAGTG 96
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5