BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28680.1
Length=2577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942461 jgi|Araly1|942461|scaffold_603005.1 3958 0.0
Ahg928023 jgi|Araly1|928023|scaffold_300480.1 2045 0.0
> Ahg942461 jgi|Araly1|942461|scaffold_603005.1
Length=2614
Score = 3958 bits (2143), Expect = 0.0
Identities = 2435/2579 (94%), Gaps = 7/2579 (0%)
Strand=Plus/Plus
Query 1 ATGAACGAGAAACTCCGGATTCTGTTCTCCTTCCTCTGTTTCTTCTATGTTCTTCTAGTT 60
||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |||
Sbjct 21 ATGAACGAGAAACTCCGGATTTTGTTTTCCGTCCTCTGTTTCTTCTATGTTCTTCTGGTT 80
Query 61 TCTCCATCTCAATCTAATGGCCAAGACATCTCCTTGAGCTGCGGAGCATCAGAACCAGCT 120
|||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 81 TCTCTATCTCAATCTAATGGCCAAGATATCTCGTTGAGCTGCGGAGCGTCAGAACCAGCT 140
Query 121 GTTGATCAAGACAAGAAAAAATGGGAACCCGATACCAAATTCTTGAAAACACCAAACACG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 141 GTTGATCAAGACAAGAAAAAATGGGAACCCGATACCAAATTCTTGAAAACGCCAAACACG 200
Query 181 GTTCATGCACCAGCTACTTATCAAGATCCTTCACTTCTTTCAACGGTTCCTTACATGACA 240
|| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 201 GTCCATGCACCAGCGACTTATCAAGATCCTTCGCTTCTTTCGACGGTTCCTTACATGACT 260
Query 241 TCAAGAATCTTTACAGCTCCAGCAACGTATGAGATCCCGGTTAAAGGCGACAAAAGACAT 300
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 261 TCAAGAATCTTTACAGCTCCAGCGACTTATGAGATCCCGGTTAAAGGAGACAAAAGACAT 320
Query 301 ATGCTCCGCTTACATTTCTATCCATCAACATACACAGGACTCAACATTCTCGACTCTTAT 360
|||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 321 TTGCTTCGCTTACATTTCTATCCATCGACATACACAGGACTCAACATTAGCGACTCTTAT 380
Query 361 TTCTCCGTGGCTGCTAATGATCTTACCCTTCTCAGCAATTTTAGTGCAGCTATCACATGT 420
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 381 TTCTCCGTGGCGGCTAACGATGTTACCCTTCTCAGCAATTTTAGTGCAGCTATCACATGT 440
Query 421 CAAGCCTTGACTCAAGCTTACCTCGTGAGAGAATATTCTCTTGCACCATCCGAAAAAGAT 480
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CAAGCCTTGACGCAGGCTTACCTCGTGAGAGAATATTCTCTTGCACCATCCGAAAAAGAT 500
Query 481 GTTTTGAGCATCATATTTACTCCCTCGGATAAACATCCAAAAGCGTTTGCTTTCATTAAT 540
||||||||||| | ||||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct 501 GTTTTGAGCATTACATTTACTCCTTCGGATAAACACCCAAAAGCTTTTGCTTTCATAAAT 560
Query 541 GGTATTGAGGTCATTCCGATGCCAGAATTGTTTGATACAGCTTCTCTTGTTGGATTCTCA 600
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 561 GGTATTGAGGTCATTCAGATGCCAGAACTGTTTGATACAGCTTCTCTTGTTGGATTCTCA 620
Query 601 GACCAGACTTCAGATACTAAGACCGCGAATCTTCAAACGATGTTTAGGCTCAATGTCGGT 660
|||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 621 GACCAGACATCAGATACTAAGACCGCGAATCTTCAGACGATGTTTAGGCTTAATGTTGGT 680
Query 661 GGGCAGGATATTCCCGGAAGTCAAGACTCTGGTGGATTAACAAGAACTTGGTACAATGAC 720
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 681 GGGCAGGATATTCCTGGAAGCCAAGACTCCGGTGGATTAACCAGAACTTGGTACAATGAC 740
Query 721 GCGCCTTATATATTCAGCGCAGGTCTTGGTGTTACTTTACAAGCAAGCAACAATTTTAGA 780
|||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||
Sbjct 741 GCGCCTTATATATTCAGCGCAGGTCTCGGTGTTACCTTGCAAGCAAGCAACAATTTCAGG 800
Query 781 ATTGATTATCAGAAAATGCCGGTTTCTACCGCTCCAGCGGATGTTTACAAAACAGCTCGA 840
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 801 ATCGATTATCAGAAAATGCCGGTTTCTACCGCTCCAGCTGATGTTTATAAAACAGCTCGA 860
Query 841 TCACAAGGACCAAACGGAGATATCAACATGAAGTCAAATCTCACATGGATGTTTCAAGTT 900
|||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 861 TCACAAGGGCCAAACGGAGATATCAACATGAAATCAAATCTTACTTGGATGTTTCAAGTT 920
Query 901 GACACTAATTTCACCTATATCATGAGGCTCCACTTCTGTGAATTCCAGCTTGCTAAAATC 960
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 921 GACACTAATTTCACCTATATCATGAGGCTCCATTTCTGTGAATTCCAGCTTTCTAAAATC 980
Query 961 AACCAGAAAGTATTCAACATTTTCATCAACAACAGAACCGCGCAAGGGGATACAAACCCC 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AACCAGAAAGTTTTCAACATTTTCATCAACAACAGAACCGCGCAAGGGGATACAAACCCC 1040
Query 1021 GCAGATATACTCGGGTGGACAGGTGGGAAAGGTATCCCTACTTACAAAGATTACGCGATA 1080
||||||||||||| ||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct 1041 GCAGATATACTCGCTTGGTCAGGTGGGAAAGGTGTCCCAACTTACAAAGATTACGCGATA 1100
Query 1081 TATGTTGATGCTAATACCGGAGGAGGAGGGGAAGAGATATCGCTTCAAATGACGCCTTCG 1140
|||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 1101 TATGTTGATGCTAACACCGGAGGAGGAGGTGAGGAGATTTCGCTTCAAATGACGCCATCA 1160
Query 1141 ACATTTGGTCAACCGGAATATTACGATTCACAGCTTAATGGGCTAGAGATTTTCAAGATT 1200
||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||
Sbjct 1161 ACATTTGGTAAACCGGAATATTACGATGCACAGCTTAACGGGCTGGAGATTTTCAAGATG 1220
Query 1201 GACACAATGAAGAACCTTGCCGGTCCAAACCCTAAGCCATCACCTATGCAAGCTAATGAA 1260
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 1221 GACACAATGAAGAACCTTGCCGGTCCAAACCCGAAGCCATCGCCTATGCAAGCTAACGAA 1280
Query 1261 GATGTTAAAAAGGACTTTCAAGGTGACAAAAGAATCACAGCTTTTGTCATTGGTTCTGCT 1320
|||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 1281 GATGTTAAAAAGGAATTTCAAGGTAACAAAAGAATCACAGCTTTCGTCATTGGTTCCGCT 1340
Query 1321 GGAGGAGTAGCAGCTGTTTTATTTTGTGCATTGTGTTTCACAATGTACCAGAGAAAA-AG 1379
|||||||||||| | |||||| |||| ||||||||||||||||||||||| |||||| |
Sbjct 1341 GGAGGAGTAGCAACGGTTTTACTTTGCGCATTGTGTTTCACAATGTACCAAAGAAAACA- 1399
Query 1380 AAAGTTTTCGGGCAGCGATTCTCACACATCAAGCTGGCTTCCTATATATGGAAACTCACA 1439
||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1400 AAAATTTTCGGGCAGCGAATCTCACACATCGAGTTGGCTTCCTATATATGGAAACTCCCA 1459
Query 1440 CACATCTGCAACAAAATCTACTATATCGGGTAAGAGCAACAACGGAAGCCACCTATCGAA 1499
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1460 CACATCTGCAACAAAATCTACAATATCCGGTAAGAGCAACAACGGAAGCCATCTATCGAA 1519
Query 1500 TCTTGCAGCGGGTTTATGTCGAAGATTCTCATTGTCCGAAATAAAACACGGAACTCATAA 1559
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1520 TCTTGCAGCGGGTTTATGTCGAAGATTTTCATTGTCGGAAATAAAACACGGAACTCATAA 1579
Query 1560 CTTCGATGAGTCAAACGTAATCGGAGTAGGAGGGTTTGGTAAGGTTTACAAAGGAGTTAT 1619
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1580 CTTTGATGAGTCAAACGTAATAGGAGTAGGAGGGTTTGGTAAGGTTTACAAAGGAGTTAT 1639
Query 1620 AGATGGAGGCACAAAAGTGGCAATCAAGAAATCAAACCCTAATTCAGAACAAGGGCTCAA 1679
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1640 AGATGGAGGCACAAAAGTAGCAATCAAGAAGTCTAACCCTAATTCAGAACAAGGGCTCAA 1699
Query 1680 CGAATTCGAGACAGAAATCGAACTTCTCTCAAGATTAAGACACAAACACTTAGTCTCATT 1739
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1700 CGAATTCGAGACGGAAATTGAACTTCTCTCAAGATTAAGACACAAACACTTAGTCTCTTT 1759
Query 1740 AATTGGATACTGCGATGAAGGTGGAGAAATGTGTCTAATATACGATTACATGTCTCTTGG 1799
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1760 AATCGGATACTGCGATGAAGGTGGGGAAATGTGTCTAATATACGATTACATGTCTCTTGG 1819
Query 1800 AACACTCAGAGAACATCTTTACAACACAAAGAGACCTCAGTTAACTTGGAAACGAAGACT 1859
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1820 AACACTCAGAGAACATCTTTACAACACAAAGAGACCTCAGTTAACTTGGAAAAGAAGACT 1879
Query 1860 CGAAATCGCCATTGGAGCTGCAAGAGGATTACATTACCTACACACAGGAGCAAAGTACAC 1919
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1880 CGAAATCGCCATTGGAGCTGCAAGAGGATTACATTACCTACACACTGGAGCAAAGTACAC 1939
Query 1920 TATCATTCACCGTGACGTCAAAACAACTAACATCTTACTAGATGAGAATTGGGTTGCTAA 1979
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 AATCATACACCGTGACGTGAAAACAACTAACATCTTACTAGATGAGAATTGGGTTGCTAA 1999
Query 1980 AGTCTCAGA-TTTCGGATTGTCCAAAACCGGACCAAACATGAATGGTGGTCATGTCACAA 2038
||| ||||| ||| |||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 2000 AGTTTCAGACTTT-GGATTGTCCAAAACAGGACCAAACATGAACGGAGGTCATGTCACAA 2058
Query 2039 CCGTTGTGAAAGGAAGTTTCGGTTACTTGGATCCAGAGTATTTCAGAAGACAACAGTTAA 2098
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2059 CCGTTGTTAAAGGAAGTTTCGGTTACTTGGATCCAGAATATTTCAGAAGACAACAGTTAA 2118
Query 2099 CTGAGAAGTCAGATGTGTACTCATTTGGAGTTGTTCTATTCGAGGTTTTATGCGCTAGGC 2158
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 2119 CTGAGAAGTCAGATGTGTATTCATTTGGAGTTGTTCTTTTCGAGGTTTTATGCGCTAGAC 2178
Query 2159 CAGCGTTAAACCCTAGTTTATCTAAAGAACAAGTTAGTCTTGGAGATTGGGCTATGAACT 2218
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2179 CAGCTTTAAACCCTAGTTTATCTAAAGAACAAGTTAGTCTTGGAGATTGGGCTATGAATT 2238
Query 2219 GTAAACGTAAAGGGACATTAGAAGACATCATTGATCCTAATCTTAAAGGAAAGATTAATC 2278
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2239 GTAAACGTAAAGGGACTTTAGAAGACATTATTGATCCTAATCTTAAAGGAAAGATTAATC 2298
Query 2279 CAGAGTGTTTGAAGAAATTTGCGGATACGGCGGAGAAGTGTTTATCTGATAGTGGCTTAG 2338
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2299 CAGAGTGTTTGAAGAAATTTGCAGATACGGCGGAGAAGTGTTTATCTGATAGTGGATTAG 2358
Query 2339 ATCGACCAACGATGGGAGATGTCTTGTGGAATCTTGAATTTGCACTTCAGTTACAAGAAA 2398
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2359 ATCGGCCAACGATGGGAGATGTTTTGTGGAATCTTGAATTTGCACTTCAGTTACAAGAAA 2418
Query 2399 CTGCTGATGGATCACGTCACCGAACGCCGAGCAATGGTGGTGGTTCTGTGGATTTAGGTG 2458
|||||||||| |||||||||||||| |||||| |||| |||||||| || ||||||||||
Sbjct 2419 CTGCTGATGGGTCACGTCACCGAACACCGAGCCATGGCGGTGGTTCCGTTGATTTAGGTG 2478
Query 2459 GAGGAGGAGGAGGTGTGACGGTGAACATCAGCGCCGGAGAAAGTGACTTGGGTGATGACT 2518
|||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2479 GAGGAGGAGGTG-TG-G-CGGTGAACATCGGCGCCGGAGAAAGTGACTTGGGTGATGACT 2535
Query 2519 TGTCATCTGAAGAAAACAGTGGAATATTTTCTCAGATTGTAAACCCTAAAGGACGATAA 2577
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2536 TGTCATCTGAAGAAAACAGTGGAATATTTTCTCAGATTGTAAATCCTAAAGGACGATAA 2594
> Ahg928023 jgi|Araly1|928023|scaffold_300480.1
Length=2593
Score = 2045 bits (1107), Expect = 0.0
Identities = 2091/2558 (82%), Gaps = 100/2558 (4%)
Strand=Plus/Plus
Query 59 TTTCTCCATCTCA-ATCTAATGGCCAAGACATCTCCT-TGAGCTGCGGAGCATCAGAACC 116
||| |||| || | ||||||||||||||| | | || |||||||||| ||||| ||| |
Sbjct 77 TTT-TCCAACT-AGATCTAATGGCCAAGA-TTTTGCTCTGAGCTGCGGGGCATCGGAAGC 133
Query 117 AGCTGTTGATCAAGACAAGAAAAAATGGGAACCCGATACCAAA-TTCTTGAAA-ACACCA 174
||| ||| ||||| ||||||||||||||||| |||| |||| || || ||| | |
Sbjct 134 TTCTGCTGACCAAGATAAGAAAAAATGGGAACCAGATA-CAAAGTT-TTTAAAGGCGGGA 191
Query 175 AACACGGTTCATGCACCAGCTACTTATCAAGATCCTTCACTTCTTTCAACGGTTCCTTAC 234
||| | |||||||| | ||||| |||||||| ||||||||||| ||||| |||||||
Sbjct 192 AACTCAATTCATGCAACGGCTACATATCAAGACCCTTCACTTCTCTCAACAATTCCTTAT 251
Query 235 ATGACATCAAGAATCTTTACAGCTCCAGCAACGTATGAGATCCCGGTTAAAGGCGACAAA 294
|||||| ||||||||||||||||||||||||| ||||| |||||| ||||||| || |||
Sbjct 252 ATGACAGCAAGAATCTTTACAGCTCCAGCAACTTATGAAATCCCGATTAAAGGAGATAAA 311
Query 295 AGACATATGCTCCGCTTACATTTCTATCCATCAACATACACAGGACTCAACA-TTCTCGA 353
|||||| |||| || ||| ||||||| |||||||||||||| || ||||||| ||| | |
Sbjct 312 AGACATTTGCTTCGGTTATATTTCTACCCATCAACATACACCGGTCTCAACATTTC-CAA 370
Query 354 CTCTTATTTCTCCGTGGC-TGCTAATGATCTTACCCTTCTCAGCAATTTTAGTGCAGCTA 412
||| |||||| || || ||||| ||| ||||||| || |||||||| || || || |
Sbjct 371 CTCGTATTTCAATGT-GCAAGCTAACGATGTTACCCTACTGAGCAATTTCAGCGCCGCGA 429
Query 413 TCACATGTCAAGCCTTGACTCAAGCTTACCTCGTGAGAGAATATTCTCTTGCA-CCATCC 471
| || |||||||| ||||| |||||||| | || | |||||| ||||||||| |||| |
Sbjct 430 TTACGTGTCAAGCTTTGACACAAGCTTATTTGGTTAAAGAATACTCTCTTGCACCCAT-C 488
Query 472 GAAAAAGATGTTTTGAGCATCATATTTACTCCC-TCGGATAAACATCC-A-AAAGCGTTT 528
|||||||||||||||||||||| ||||| ||| || |||||| | || | | | | |||
Sbjct 489 GAAAAAGATGTTTTGAGCATCACGTTTAC-CCCATCAGATAAATA-CCGAGACA-CATTT 545
Query 529 G-CTTTCATTAATGGTATTGAGGTCATTCCGATGCCAGAATTGTTTGATACAGCTTCTCT 587
| |||| || || ||||||||||| |||| |||||| |||||||||||||| || ||||
Sbjct 546 GCCTTT-ATAAACGGTATTGAGGTGATTCAGATGCCGGAATTGTTTGATACGGCGGCTCT 604
Query 588 TGTTGGATTCTCAGACCAGAC-TTCAGATACTAAGACCGCGAATCTTCAAACGATGTTTA 646
|||||| ||| |||| || || | ||| | |||||||||||| |||| | |||||||
Sbjct 605 TGTTGGTTTCACAGATCAAACAGT-GGATGCCAAGACCGCGAATTTTCAGTCAATGTTTA 663
Query 647 GGCTCAATGTCGGTGGGCAGGATATTCCCGGAAGTCAAGACTCTGGTGGATTAACAAGAA 706
|||| ||||| ||||| ||||| ||||| ||||| |||||||||||||| || |||||||
Sbjct 664 GGCTTAATGTTGGTGGTCAGGACATTCCTGGAAGCCAAGACTCTGGTGGGTTGACAAGAA 723
Query 707 CTTGGTACAATGACGCGCCTTATATATTCAGCGCAGGTCTTGGTGTTAC-TTTACAAGCA 765
||||||||||||| || ||||| || || || || |||||||||||||| || ||||||
Sbjct 724 CTTGGTACAATGATGCACCTTACATCTTTAGTGCGGGTCTTGGTGTTACACTT-CAAGCA 782
Query 766 AGCAACAATTTTAGAATTGATTATCAGAAAATGCCGGTTTCTACCGCTCCAGCGGATGTT 825
|||||||||||||| || | || |||||||||||||| |||| |||||||| |||||
Sbjct 783 AGCAACAATTTTAGGATCAACTACCAGAAAATGCCGGTGTCTATAGCTCCAGCCGATGTA 842
Query 826 TACAAAACAGCTCGATCACAAGGACCAAACGGAGATATCAACATGAAGTCAAATCTCACA 885
|||||||| || |||| ||||| || ||||||||||||||| | || || ||||| |||
Sbjct 843 TACAAAACCGCAAGATCTCAAGGCCCGAACGGAGATATCAACCTCAAATCCAATCTTACA 902
Query 886 TGGATGTTTCAAGTTGACACTAATTTCACCTATATCATGAGGCTCCACTTCTGTGAATTC 945
|||||||| ||| | || | || ||||| || || |||| ||||| ||||| ||||||
Sbjct 903 TGGATGTTCCAAATCGATAAGAACTTCACTTACATTTTGAGACTCCATTTCTGCGAATTC 962
Query 946 CAGCTTGCTAAA-ATCAACCAGAAAGTATTCAACATTTTCATCAACAACAGAACCGCGCA 1004
|||||| | ||| ||||||||||| || ||||| || | |||||| |||||||| |||||
Sbjct 963 CAGCTTTC-AAAGATCAACCAGAAGGTTTTCAATATCTACATCAATAACAGAACAGCGCA 1021
Query 1005 AGGGGATACAAACCCCGCAGATATACTCGGGTGGACAGGTGGGAAAGGTATCCCTACTTA 1064
|| ||||| || || ||||||||||||||||||||||| | |||||| ||||| || ||
Sbjct 1022 AGCAGATACCAATCCTGCAGATATACTCGGGTGGACAGGAGAGAAAGGAATCCCAACATA 1081
Query 1065 CAAAGATTACGCGATATATGTTGATGCTAATACCGGAGGA-GGAGGGGAAGAGA-TATCG 1122
|||||| ||||||||||||||||||||| | | | | | ||||| ||||||| || |
Sbjct 1082 CAAAGACTACGCGATATATGTTGATGCT-A-A-C--A--ATGGAGGCGAAGAGATTA-CA 1133
Query 1123 CTTCAAATGACGCCTTCGA-CATTTGGTCAACCGGAATATTACGATTC-ACAGCTTAATG 1180
||||| ||||| || || | |||||| |||| |||||||| ||||| | ||||| |
Sbjct 1134 CTTCAGATGACTCCATC-AGTTTTTGGTGAACCAGAATATTATGATTCGTC-TCTTAACG 1191
Query 1181 GGCTAGAGATTTTCAAGATTGACACAATGAAGAACCTTGCCGGTCCAAACCCTAAGCCAT 1240
||||||||||||||||||| |||||| |||| || ||||| ||||||||||| ||||||
Sbjct 1192 GGCTAGAGATTTTCAAGATGGACACATTGAAAAATCTTGCGGGTCCAAACCCCGAGCCAT 1251
Query 1241 CACCTATGCAAGCTAATGAAGATGTTAAAAAGGACTTTCAAGGTGAC-AAAAGA-ATCAC 1298
| |||||||||||| | | ||| ||||||||||| ||||| | || |||||| | ||
Sbjct 1252 CGCCTATGCAAGCTGAGGGAGAGGTTAAAAAGGA-ATTCAA-G-AACGAAAAGAGA-AAC 1307
Query 1299 AGCTTTTGTCATTGGTTCTGCTGGAGGAGTAGCAGCTGTTTTATTTTGTGCATTGTGTTT 1358
||||| ||||||| || || |||||||| ||| |||||| | ||||| ||||||||
Sbjct 1308 -GCTTTCATCATTGGCTCGGCCGGAGGAGTTTTAGCGGTTTTAGTCTGTGCCTTGTGTTT 1366
Query 1359 CACAATGTACCAGAGAA-AAAGAAAGTTTTC-GGGCA-GCGATTCTCACACATCAAGCTG 1415
|| || | |||| ||| | | | | || | |||| |||||||||||||| ||
Sbjct 1367 TACGGCCTA-TA-AGAAGAAACATGGATACCAAGG-AGGCGACTCTCACACATCAAGTTG 1423
Query 1416 GCTTCCTATATATGGAAACTC-ACACACATCTGCAACAAAATCTACTATATC-GGGTAAG 1473
||||||||||||||||||||| || |||||| | ||| ||||| || || || ||| |||
Sbjct 1424 GCTTCCTATATATGGAAACTCTAC-CACATCAGGAACTAAATCAACCATCTCAGGG-AAG 1481
Query 1474 AGCAACAACGGAAGCCACCTATCGAATCTTGCAGCGGGTTTATGTCGAAGATTCTCATTG 1533
|||||||| ||||| |||||||| ||||||||||| ||||||||||| |||||||| |||
Sbjct 1482 AGCAACAATGGAAGTCACCTATCCAATCTTGCAGCAGGTTTATGTCGTAGATTCTCTTTG 1541
Query 1534 TCC-GAAATAAAACACGGAACTCATAACTTCGATGAGTCAAACGTAATCGGAGTAGGAGG 1592
|| ||||| |||||||| ||||| ||||||||||| || ||||| || ||||| |||||
Sbjct 1542 -CCTGAAATCAAACACGGGACTCAAAACTTCGATGATTCCAACGTCATTGGAGTTGGAGG 1600
Query 1593 GTTTGGTAAGGTTTACAAAGGAGTTATAGATGGAGGC-ACAAAAGTGGCAATCAAGA-AA 1650
|||||| || || ||||||||||||||||| || | || |||||||| |||| | |
Sbjct 1601 GTTTGGGAAAGTCTACAAAGGAGTTATAGACGG-CACAACCAAAGTGGCGGTCAA-ACGA 1658
Query 1651 TCAAACCCTAATTCAGAACAAGGGCTCAACGAATTCGAGACAGAAATCGAACTTCTCTCA 1710
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1659 TCAAACCCAAATTCAGAACAAGGACTCAACGAATTCGAGACAGAAATCGAACTTCTCTCA 1718
Query 1711 AGATTAAGACACAAACACTTAGTCTCATTAATTGGATACTGCGATGAAGGTGGAGAAATG 1770
|||||||||||||||||||| ||||| || || ||||||||||| || || || ||||||
Sbjct 1719 AGATTAAGACACAAACACTTGGTCTCCTTGATAGGATACTGCGACGACGGAGGCGAAATG 1778
Query 1771 TGTCTAATATACGATTACATGTCTCTTGGAACACTCAGAGAACATCTTTACAACACAAAG 1830
||||| ||||||||||||||| || ||||||||||| | |||||||| ||||||||||||
Sbjct 1779 TGTCTCATATACGATTACATGGCTTTTGGAACACTCCGTGAACATCTATACAACACAAAG 1838
Query 1831 AGACCTCAGTTAACTTGGAAACGAAGACTCGAAATCGCCATTGGAGCTGCAAGAGGATTA 1890
| ||| || ||||||||||||||||| || || ||||| |||||||||||||||||| ||
Sbjct 1839 AAACCACAATTAACTTGGAAACGAAGGCTAGAGATCGCTATTGGAGCTGCAAGAGGACTA 1898
Query 1891 CATTACCTACACACAGGAGCAAAGTACACTATCATTCACCGTGACGTCAAAACAACTAAC 1950
|||||||| |||||||||||||||||||| || || ||| | ||||| ||||||||||||
Sbjct 1899 CATTACCTTCACACAGGAGCAAAGTACACGATTATACACAGAGACGTAAAAACAACTAAC 1958
Query 1951 ATC-TTACTAGATGAGAATTGGGTTGCTAAAGTCTCAGA-TTTCGGATTGTCCAAAACCG 2008
||| || |||||||||| ||||| || ||||| ||||| ||| || || |||||||| |
Sbjct 1959 ATCCTTG-TAGATGAGAACTGGGTAGCGAAAGTTTCAGACTTTGGG-TTATCCAAAACTG 2016
Query 2009 GACCAAACATGAATGGTGGTCATGTCACAACCGTTGTGAAAGGAAGTTTCGGTTACTTGG 2068
|||||||||||||||| || ||||| ||||||||||| |||||||||||||| || || |
Sbjct 2017 GACCAAACATGAATGGAGGCCATGTAACAACCGTTGTCAAAGGAAGTTTCGGATATTTAG 2076
Query 2069 ATCCAGAGTA-TTTCAGAAGACAACAGTTAACTGAGAAGTCAGATGTGTACTCATTTGGA 2127
||||||| || ||| ||||||||||| | |||||||| |||||||| |||||||| |||
Sbjct 2077 ATCCAGAATACTTT-AGAAGACAACAACTGACTGAGAAATCAGATGTTTACTCATTCGGA 2135
Query 2128 GTTGTTCTATTCGAGGTTTTATGCGCTAGGCCAGCGTTAAACCCTAGTTTATCTAAAGAA 2187
|||||||||||||| | ||||||| || |||||||||||||| ||||| |||| |||
Sbjct 2136 GTTGTTCTATTCGAAATCCTATGCGCAAGACCAGCGTTAAACCCAAGTTTGCCTAAGGAA 2195
Query 2188 CAAGTTAGTCTTGGAGATTGGGCTATGAACTGTAAACGTAAAGGGACATT-AGAAGACAT 2246
||||| ||||| ||||||||||| ||||| || ||||| ||||||| ||| ||| || ||
Sbjct 2196 CAAGTGAGTCTCGGAGATTGGGCAATGAATTGCAAACGAAAAGGGA-ATTTAGAGGATAT 2254
Query 2247 CATTGATCCTAATCTTAAAGGAAAGATTAATCCAGAGTGTTTGAAGAAATTTGCGGATAC 2306
|| ||||| ||||| ||||| ||||| ||| |||||||||||||||||||||| || ||
Sbjct 2255 AATCGATCCAAATCTGAAAGGGAAGATCAATTCAGAGTGTTTGAAGAAATTTGCAGACAC 2314
Query 2307 GGCGGAGAAGTGT-TTATCTGATAGTGGCTTAGATCGACCAACGATGGGAGATGTCTTGT 2365
||||||||||||| ||| | |||||||| ||||| || || || ||||||||||| ||||
Sbjct 2315 GGCGGAGAAGTGTCTTAAC-GATAGTGGATTAGAACGGCCGACAATGGGAGATGTTTTGT 2373
Query 2366 GGAATCTTGAATTTGCACTTCAG-TTACAAGAAACTGCTGATGG-ATCACGTCACCGAAC 2423
||||||||||||| || |||||| || ||||||||||||||||| | | ||||| || ||
Sbjct 2374 GGAATCTTGAATTCGCGCTTCAGCTT-CAAGAAACTGCTGATGGGA-CTCGTCATCGGAC 2431
Query 2424 GCCGAGCAATGGTGGTGGTTCTGTGGAT-TTAGGTGGAGGAGGAGGAGGTGTGACGGTGA 2482
|| | | ||| || | || | |||| || || |||||||| | || | |||| |
Sbjct 2432 TCCTAATAGTGGAGGAAGCTCCGAGGATCTT-GGCGGAGGAGGC--A--TG-G-CGGTTA 2484
Query 2483 ACATCAGCGCCGG-AGAAAGTGACTTGGGTGATGACTTGTCATCTGAAGAAAACAGTG-G 2540
|| || || | || ||| | |||| | ||||| || || || || || |||| | |
Sbjct 2485 ACGTC-GC-C-GGTAGAGA-TGACGTCAGTGAT--CTA-TCCTCGGAGGATAACACCGAG 2537
Query 2541 AATATTTTCTCAGATTGTAAA-CCCTAAAGGACGATAA 2577
| |||| ||||| |||||||| ||| ||||||||||||
Sbjct 2538 A-TATTCTCTCAAATTGTAAATCCC-AAAGGACGATAA 2573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97168214995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5