BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28690.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351825 jgi|Araly1|351825|fgenesh1_pg.C_scaffold_6002418 850 0.0
> Ahg351825 jgi|Araly1|351825|fgenesh1_pg.C_scaffold_6002418
Length=588
Score = 850 bits (460), Expect = 0.0
Identities = 548/589 (93%), Gaps = 11/589 (2%)
Strand=Plus/Plus
Query 296 ATGGTGAGGAGAAGAGAAGGTCTTACCTTACCAATCTCGTCTTCGACGCCATCTCTTCCC 355
|||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1 ATGGTGAGAAGAAGAGAAGGTCTTACCTTACCAATTTCGTCTTCAACGCCATCGCTTCCT 60
Query 356 GAGTCACTACCTGATATTAAAACAGTGGCTCCTCATAAACCAAAACAACGGTTATCTAAG 415
|| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 61 GAATCACTACCCGATATTAAAACAGTGGCGCCACATAAACCAAAACAACGGTTATCTAAG 120
Query 416 CAGTTATCAATGCGTGAGACACCTCGAGATGTTGCTTGGGAAAAAAGGCGCCGTCAGATG 475
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CAATTATCAATGCGTGAGACACCGCGAGATGTTGCTTGGGAAAAAAGGCGCCGTCAGATG 180
Query 476 TTAAAGATTCAGGAGAAGAAACAAAAAAGCGTCTCTGAAAACGATAACGATTCGCCGGAT 535
|||||||||||||||||||| |||||| |||||||||||||||||| ||| |||| |||
Sbjct 181 TTAAAGATTCAGGAGAAGAAGCAAAAAGGCGTCTCTGAAAACGATAGTGATCCGCCAGAT 240
Query 536 CTAACTGATGAAGATTTAAGGGAGCTTAAAGGGTCGATCGAGTTAGGGTTTGGTTTCAGT 595
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 CTAACCGATGAAGATTTAAGGGAGCTTAAAGGGTCGATCGAGTTAGGGTTTGGTTTCAAT 300
Query 596 GAAGAAGCCGGACAGAAG-TTGTGCAACACGTTACCAGCATTGGACCTTTACTTTGCTGT 654
|||||||| ||||||| | || |||||||| ||||||||||| || ||||||||||||||
Sbjct 301 GAAGAAGCTGGACAGATGCTT-TGCAACACATTACCAGCATTAGATCTTTACTTTGCTGT 359
Query 655 GAATAGGCAGCTTTCGCCTCTCCCTTCACCTAGTAGCAGC---A--A----TGGAGGAGA 705
||||||||||||||||||||| |||||||||||||||||| | | |||||||||
Sbjct 360 GAATAGGCAGCTTTCGCCTCTTCCTTCACCTAGTAGCAGCCGTAGCAGCAATGGAGGAGA 419
Query 706 TGGATCCTTGTCTTCTACTTCTGTTTCCTCAAGCAGCATACCTTGTAGTCCAAAAACCGA 765
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 TGGATCCTTGTCTTCTACTTCTGTTTCCTCAAGCAGCATACCTTGTAGCCCAAAAACCGA 479
Query 766 CTCGGATTCATTAAAGATCTTATGTCCAGGGGACAATCCTCAACAAGTGAAGCAAAGATT 825
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 480 CTCGGATTCATTAAAGATCCTATGCCCAGGGGACAATCCTCAACAGGTGAAGCAAAGATT 539
Query 826 ACGACATTGGGCACAAGCCGTTGCATGTTCTTTGATGCAATCTCACTGA 874
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 ACGACATTGGGCACAAGCTGTTGCATGTTCTTTGATGCAATCTCACTGA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5