BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G28720.1

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936575 jgi|Araly1|936575|scaffold_500766.1                        300    5e-81


> Ahg936575 jgi|Araly1|936575|scaffold_500766.1
Length=1555

 Score =  300 bits (162),  Expect = 5e-81
 Identities = 252/293 (86%), Gaps = 15/293 (5%)
 Strand=Plus/Plus

Query  51   GAATTTGGTGAAACCAACAAAAATATATATAACTGTGCTACAAAATAAGCCTCTTCCTTT  110
            ||||| |||||||| |||||||| ||||||||| ||| ||||||||||||||||||| ||
Sbjct  441  GAATTCGGTGAAACAAACAAAAA-ATATATAACCGTGTTACAAAATAAGCCTCTTCCGTT  499

Query  111  CAAAGATTTACTAGATGTTATACATAGCAAACATGATCTTGAGCAAGATTTTCGCTATTC  170
            | ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct  500  CCAAGATTTACTAGATGTTATACATAGCAAACACGATCTTGAGCAAGACTCTCGCTATTC  559

Query  171  ACCCCACACACTTGGAGTTCAGCTTGATCTCGAACAAGAACCATAT---GATGATGATG-  226
            ||||||||  ||||||||||| |||||||||||| |||||||||||   |||||||||| 
Sbjct  560  ACCCCACATGCTTGGAGTTCATCTTGATCTCGAAAAAGAACCATATAATGATGATGATGA  619

Query  227  -G-TG-TG-----CCAGCAGATGACATAGAAGAACATGGTCAAACAGCACCTCCCTTTG-  277
             | || ||     ||||  ||||||| ||||||| |||||| ||| | |  ||| |  | 
Sbjct  620  TGATGATGATGTGCCAGTGGATGACACAGAAGAAAATGGTCGAACCGTAGTTCC-TCCGG  678

Query  278  AGAATTCTAATCTAAGAGCATATGATGATGATTTACCACGACTCTCTCGGTCA  330
            | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  679  ATAATTCTAATTTAAGAGCATATGATGATGATTTACCACGACTCTCTCGGTCA  731



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12133477302


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5