BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G28730.1

Length=891
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg908332 jgi|Araly1|908332|Al_scaffold_0002_1413                    331    5e-90


> Ahg908332 jgi|Araly1|908332|Al_scaffold_0002_1413
Length=270

 Score =  331 bits (179),  Expect = 5e-90
 Identities = 217/235 (92%), Gaps = 4/235 (2%)
 Strand=Plus/Plus

Query  151  TCGACGAACATAAGCCTCGACGAGAGTGTTGCAATCTTTCTAATCATTTGTGCCTCAAA-  209
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct  37   TCGACAAACATAAGCCTCGACGAGAGTGTTGCAATCTTTCTAATCATTTGTGCC-CAAAA  95

Query  210  TGATACACAACGTGATATTGCATTAAGGTTTGGACATGCCCAAGAGACAATTTGGCGAAA  269
            |||||||||| ||||||||||| |||||||||| |||| ||| |||||||||||||||||
Sbjct  96   TGATACACAAGGTGATATTGCACTAAGGTTTGGGCATGTCCAGGAGACAATTTGGCGAAA  155

Query  270  GTTTCATGATGTGCTTAAAGCAATGGAACGATTGGCTGTAGAGTATATACG-CCCAAGAA  328
            |||||||||||| ||||||||||||||||||||||| ||||| |||||||  |||| |||
Sbjct  156  GTTTCATGATGTTCTTAAAGCAATGGAACGATTGGCAGTAGAATATATACTTCCCA-GAA  214

Query  329  AAGTCGAAGAACTTAGAGCTATCTCTAATCGTTTGCAAGATGATACAAGATATTG  383
             |||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct  215  CAGTCGAAGAACTTAGAGCTATCTCCAACCGTTTGCAAGACGATACAAGATATTG  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33014446122


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5