BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28740.1
Length=2923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489660 jgi|Araly1|489660|fgenesh2_kg.6__2794__AT5G28740.1 4220 0.0
Ahg924966 jgi|Araly1|924966|scaffold_200527.1 1434 0.0
> Ahg489660 jgi|Araly1|489660|fgenesh2_kg.6__2794__AT5G28740.1
Length=2875
Score = 4220 bits (2285), Expect = 0.0
Identities = 2664/2843 (94%), Gaps = 42/2843 (1%)
Strand=Plus/Plus
Query 31 ATGGCGATTTCCAAAGATCTCTATCCTTCTCAAGAGGATCTACTCTATGAGGAAGAGCTT 90
|||||||||||||||||||| || |||||||| |||||||| ||||||||||||||| ||
Sbjct 1 ATGGCGATTTCCAAAGATCTATACCCTTCTCAGGAGGATCTTCTCTATGAGGAAGAG-TT 59
Query 91 CTT-CGAAACCAATTCAGCTTAAAGCTATGGTGGAGATACCTAATCGCAAAAGCTGAATC 149
|| || |||| |||||||||||||||||||||||| || | || || ||||| |||||
Sbjct 60 ATTGCGGAACCCATTCAGCTTAAAGCTATGGTGGAGGTATTTGATAGCGAAAGCGGAATC 119
Query 150 TCCTTTTAAGAA-ACGCTTCATCATCTACGAGAGAGCTTTAAAAGCACTTCCTGGAAGCT 208
|| |||||||| | | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 GCCATTTAAGAAGA-GATTCATCATCTACGAGAGAGCTTTGAAAGCACTTCCTGGAAGCT 178
Query 209 ATAAACTGTGGTACGCTTATCTTAGAGAACGACTCGATATCGTTAGGAATTTGCCTGTTA 268
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 179 ATAAATTGTGGTACGCTTATCTTAGAGAACGACTCGATATCGTTAGGAATTTGCCAGTTA 238
Query 269 CTCATCCACAGTACGATTCTCTCAACAATACTTTTGAGAGAGGTCTT-GTTACTATGCAT 327
||||||| ||||| ||||||||||| ||||||||||| |||| | || ||||||||||||
Sbjct 239 CTCATCCTCAGTATGATTCTCTCAATAATACTTTTGAAAGAGCT-TTGGTTACTATGCAT 297
Query 328 AAGATGCCTAGGATTTGGGTTATGTATCTTCAGACTCTTACGGTTCAGCAATTGATTACT 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGATGCCTAGGATTTGGGTTATGTATCTTCAGACTCTTACGGTTCAGCAATTGATTACT 357
Query 388 CGGACTCGGCGAACTTTCGACCGTGCGCTTTGTGCTTTACCTGTTACTCAACATGATAGG 447
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 358 CGGACTCGGAGAACTTTCGACCGTGCGCTTTGTGCGTTGCCTGTTACTCAACATGATAGG 417
Query 448 ATTTGGGAACCGTATCTTGTGTTTGTGAGTCAAAATGGGATTCCTATTGAGACTTCACTT 507
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 418 ATTTGGGAACCGTATCTTGTGTTTGTGAGTCAGGATGGGATTCCTATTGAGACTTCTCTT 477
Query 508 AGGGTTTATAGAAGGTATCTTATGTATGATCCTAGTCATATTGAGGAGTTTATTGAGTTT 567
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGAGTTTATAGGAGGTATCTTATGTATGATCCTAGTCATATTGAGGAGTTTATTGAGTTT 537
Query 568 CTTGTCAAGTCTGAGCGTTGGCAAGAATCTGCAGAGAGATTAGCTTCTGTGTTGAATGAT 627
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTGTGAAGTCAGAGCGTTGGCAGGAATCTGCAGAGAGATTAGCTTCTGTGTTGAATGAT 597
Query 628 GATAAGTTTTATTCTATTAAAGGGAAGACTAAGCATAAACTGTGGTTGGAGTTGTGTGAG 687
|||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 598 GATAAGTTTTATTCGATTAAAGGGAAGACGAAGCATAAGCTGTGGATGGAGTTGTGTGAG 657
Query 688 CTTCTTGTGCATCATGCTAATGTGATTTCGGGTCTTAATGTTGATGCTATTATAAGAGGA 747
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 658 CTTCTTGTGCATCATGCTAATGTGATTTCGGGTCTTAATGTTGATGCTATCATTAGAGGA 717
Query 748 GGTATTAGGAAGTTTACGGATGAAGTTGGAATGCTGTGGACTTCTCTTGCGGATTATTAC 807
|||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 718 GGTATTAGGAAGTTTACGGATGAAGTGGGTATGTTGTGGACTTCTCTTGCGGATTATTAC 777
Query 808 ATTAGGAAGAATTTGTTGGAGAAAGCTAGGGATATTTATGAGGAGGGTATGATGAAGGTA 867
||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 778 ATTAGGAAGAATTTGCTGGAGAAAGCTAGGGATATCTATGAAGAGGGTATGATGAAAGTT 837
Query 868 GTAACTGTAAGGGATTTTAGTGTGATATTTGACGTTTATTCACGGTTCGAGGAGAGTACG 927
|| || || || ||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 838 GTTACGGTGAGAGATTTTAGTGTGATATTTGACGTTTATTCACGGTTTGAGGAAAGCACT 897
Query 928 GTCGCgaagaagatggagatgatgagttcaagtgatgaagaagatgagaatgaagagaat 987
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTCGCTAAAAAGATGGAGATGATGAGTTCAAGTGATGAAGAAGATGAGAATGAAGAGAAT 957
Query 988 ggcgtagaggatgatgaagagGATGTTCGCCTTAATTTTAATCTGTCGGTGAAAGAGTTG 1047
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 958 GGCGTAGAGGATGAAGATGAGGATGTTCGCCTCAATTTTAATCTGTCGGTGAAAGAGCTG 1017
Query 1048 CAGAGGAAGATACTGAATGGGTTTTGGTTGAATGATGATAATGATGTTGATCTGAGATTG 1107
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1018 CAGAGGAAGATACTGAATGGGTTTTGGTTGAACGATGATAATGATGTGGATCTGAGATTG 1077
Query 1108 GCTCGTTTGGAAGAACTGATGAACAGAAGACCTGCACTGGCAAACAGTGTGCTCCTTAGG 1167
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1078 GCTCGCTTGGAAGAACTGATGAACAGAAGACCTGCACTAGCAAACAGTGTGCTCCTTAGG 1137
Query 1168 CAGAATCCTCACAATGTTGAGCAATGGCATCGTAGAGTCAAAATATTTGAGGGAAACGCA 1227
|| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1138 CAAAATCCACACAATGTTGAGCAATGGCATCGTAGAGTCAAAATATTCGAAGGAAACGCA 1197
Query 1228 GCAAAGCAGATTCTCACATACACAGAAGCAGTGAGGACTGTTGATCCTATGAAAGCAGTT 1287
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1198 GCGAAGCAGATTCTCACATACACAGAAGCAGTGAGGACTGTGGATCCTATGAAAGCAGTT 1257
Query 1288 GGGAAGCCTCACACCTTGTGGGTTGCTTTTGCCAAGTTGTATGAAAACCACAAAGACCTG 1347
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1258 GGGAAGCCTCACACGTTGTGGGTTGCTTTTGCCAAGTTGTATGAAAATCACAAAGACCTG 1317
Query 1348 GTCAATACTAGAGTGATTTTTGACAAAGCAGTCCAGGTAAACTACAAAACCGTAGATCAT 1407
|||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1318 GTCAATACAAGAGTGATTCTTGACAAGGCAGTCCAGGTAAACTACAAAAACGTAGATCAT 1377
Query 1408 CTCGCCAGTGTGTGGTGTGAGTGGGCTGAGATGGAGCTGAGACACAAGAATTTCAAAGGA 1467
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1378 CTCGCCAGTGTGTGGTGTGAGTGGGCTGAGATGGAATTGAGACACAAGAATTTCAAAGGA 1437
Query 1468 GCATTAGAGCTGATGAGGCGTGCTACAGCTGTACCGACAGTAGAAGTCAGACGGAGAGTT 1527
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1438 GCACTAGAGCTGATGAGGCGTGCTACAGCTGTACCAACAGTAGAAGTCAGACGGAGAGTT 1497
Query 1528 GCTGCTGATGGCAATGAACCAGTCCAGATGAAGCTGCATAGATCCTTGAGGCTTTGGTCC 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GCTGCTGATGGCAATGAACCAGTCCAGATGAAGCTGCATAGATCCTTGAGGCTTTGGTCC 1557
Query 1588 TTTTATGTTGATCTGGAAGAAAGTCTGGGGACGTTAGAATCGACAAGAGCTGTCTATGAG 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TTTTATGTTGATCTGGAAGAAAGTCTGGGGACGTTAGAATCGACAAGAGCTGTCTATGAG 1617
Query 1648 AAAATATTGGATTTGAGAATAGCTACACCTCAAATTATAATGAATTATGCTTTTCTTCTT 1707
||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||
Sbjct 1618 AAAATATTGGATTTGAGAATAGCTACACCACAGATTATATTGAATTATGCTTTCCTTCTT 1677
Query 1708 GAGGAAAATAAGTACTTTGAAGATGCGTTCAAGGTGTATGAAAGAGGTGTCAAGATATTC 1767
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GAGGAAAATAAGTACTTCGAAGATGCGTTCAAGGTGTATGAAAGAGGTGTCAAGATATTC 1737
Query 1768 AAGTATCCTCATGTGAAAGACATTTGGGTAACCTATCTTACAAAGTTTGTCAAGAGATAC 1827
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1738 AAGTATCCTCATGTGAAAGACATCTGGGTAACCTATCTTACAAAGTTTGTCAAGAGATAT 1797
Query 1828 GGGAAGACAAAGCTGGAGCGGGCAA-GAGAGTTGT-TTGAGCATGCTGTTTCAATGGCCC 1885
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct 1798 GGGAAGACAAAGCTGGAGCGGGCAAAGAGAGTTGTATTGAGCATGCTGTTTCAATGTTCC 1857
Query 1886 -CA------T---CT---GATGCT------G-T-C----AGGACGTTATACCTTCAGTAT 1920
|| | || |||||| | | | |||||||||||||||||||||
Sbjct 1858 TCAGAGAACTTGTCTATTGATGCTCCATCTGATGCTGTCAGGACGTTATACCTTCAGTAT 1917
Query 1921 GCTAAGCTAGAAGAGGATTATGGTCTGGCTAAACGAGCCATGAAGGTTTATGAGGAAGCC 1980
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1918 GCTAAGCTAGAAGAGGATTATGGTCTGGCCAAGCGAGCCATGAAGGTTTATGAGGAAGCC 1977
Query 1981 ACCAAAAAAGTTCCAGAAGGTCAGAAGCTTGAGATGTACGAGATATACATTTCCCGAGCA 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1978 ACCAAAAAAGTTCCAGAAGGTCAGAAGCTTGAGATGTACGAGATATACATTTCTCGAGCA 2037
Query 2041 GCGGAGATATTTGGTGTTCCCAGAACAAGGGAAATATATGAACAAGCAATTGAATCTGGG 2100
|| ||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||
Sbjct 2038 GCAGAGATATTTGGTGTTCCCAGAACAAGGGAGATTTATGAGCAAGCAATAGAATCTGGG 2097
Query 2101 CTTCCACATAAGGATGTGAAGATCATGTGCATAAAATTTGCTGAGCTGGAGAGAAGCTTG 2160
|||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 2098 CTTCCACACAAGGATGTGAAGATCATGTGCATAAAATTCGCAGAGCTTGAGAGAAGCTTG 2157
Query 2161 GGAGAGATTGATCGTGCTCGTGCACTCTATAAGTATTCCTCCCAGTTTGCAGATCCAAGG 2220
||||| || |||||||||||||||||||| |||||| |||| |||||||||||||| |||
Sbjct 2158 GGAGAAATCGATCGTGCTCGTGCACTCTACAAGTATGCCTCTCAGTTTGCAGATCCGAGG 2217
Query 2221 TCCGACCCTGAATTCTGGAACAAATGGCATGAGTTCGAGGTCCAGCACGGGAACGAAGAT 2280
|||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2218 TCCGACCCCGAGTTCTGGAACAAGTGGCATGAGTTCGAGGTCCAGCACGGGAATGAAGAT 2277
Query 2281 ACCTACAGAGAAATGCTCCGTATCAAGCGAAGTGTTTCCGCAAGCTATAGTCAGACTCAT 2340
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2278 ACCTACAGAGAAATGCTCCGTATCAAGCGAAGTGTTTCCGCAAGCTACAGTCAGACCCAT 2337
Query 2341 TTCATTCTACCAGAGAACATGATGCAAAAGGACAAGCTGCTTGATGTGGAAGACGCAAAA 2400
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2338 TTCATTCTACCAGAGAACATGATGCAAAAGGACAAGCTGCTAGATGTGGAAGACGCAAAA 2397
Query 2401 GGCGAGCTGAAGAGAGCCGGTTTACCTGAAGACGAAATGGCGGCTCTGGAGAGGCAGCTT 2460
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 GACGAGCTGAAGAAAGCCGGTTTACCTGAAGACGAAATGGCGGCTCTGGAGAGGCAGCTT 2457
Query 2461 TTG--T-CTACAACTAC--CC-CCACAGA-GCCAGCAAAAGATGGCGGGAGAAGAGTTGG 2513
||| | ||||||| || || ||||||| || |||||||||||||| |||||||||||
Sbjct 2458 TTGACTACTACAACAACTACCACCACAGATGC-AGCAAAAGATGGCGTAAGAAGAGTTGG 2516
Query 2514 GTTTGTAAGCGCAGGAGTCATCTCACAGTCCGGTGAGAATGAGGGGAAACCAGTGACAGG 2573
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2517 GTTTGTGAGTGCAGGAGTCATCTCACAGTCTGGTGAGAATGAGGGGAAACCAGTGACAGG 2576
Query 2574 GAATGGAGAAGACATCGAGCTTCCCGATGAAAGTGATGATGAGTCTGATGGAGATGACCA 2633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577 GAATGGAGAAGACATCGAGCTTCCCGATGAAAGTGATGATGAGTCTGATGGAGATGACCA 2636
Query 2634 TGTGGAGATCTCTCAGAAAGAAGTCCCTGCCGCTGTTTTTGGAGGACTTGCTAGAAAGAG 2693
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2637 AGTGGAGATCGCTCAGAAAGAAGTCCCTGCTGCTGTTTTTGGAGGACTTGCTAGAAAGAG 2696
Query 2694 AGACGAAGACGGCGAAGAAGCTGGAGAAGACGGTGCTGCCCAGAAATTGGGTGCACTTGA 2753
||||||| ||| ||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 2697 AGACGAAAACGATGAAGAAGCTGGAGAAGACGGTGCAGCCAAGAAACTGGGTGCACTTGA 2756
Query 2754 GAGGATCAAGAGACAGAAGCTTAATCAGTGAACAAGCGAGTCGTAGACAATTAGTCTTGT 2813
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2757 GAGGATCAAGAGACAGAAGCTTAATCAGTGAACAAGCGAGTCATAGACAATTAGTCTTGT 2816
Query 2814 GCTT-AGTGATTCTGGAACCAAA 2835
|||| |||||||||||||| |||
Sbjct 2817 GCTTCAGTGATTCTGGAACTAAA 2839
> Ahg924966 jgi|Araly1|924966|scaffold_200527.1
Length=2464
Score = 1434 bits (776), Expect = 0.0
Identities = 1791/2267 (79%), Gaps = 125/2267 (6%)
Strand=Plus/Plus
Query 110 TAAAGCTATGGTGGAGATACCTAATCGCAAAAGCTGAA-TCTCCTTTTAAGAAACGCTTC 168
|||||| |||||||||||| | || | ||| || || ||||||| ||| | || |||
Sbjct 88 TAAAGCCATGGTGGAGATATTTGATTTCGAAATCT-AAGGCTCCTTTCAAGGATCGATTC 146
Query 169 ATCATCTACGAGAGAGCTTTAAAAGCACTTCCTGGAAGCTATAAACTGTGGTACGCTTAT 228
||||||| |||||||| | ||||| ||||| || ||||| || || |||||||| |||
Sbjct 147 GTCATCTATGAGAGAGCCATCAAAGCTCTTCCCGGTAGCTACAAGCTTTGGTACGCGTAT 206
Query 229 CTTAGAGAACGACTCGATATCGTTAG-GAATTTGCCTGTTACTC-ATCCACAGTACGA-T 285
|| | ||||| |||||| ||||||| | ||||| |||||| | |||||| ||||||
Sbjct 207 CTCCGGGAACGTCTCGATTTCGTTAGTG-ATTTGTGTGTTAC-CGATCCACCGTACGAGA 264
Query 286 TCTCTCAACAATACTTTTGAGAGAGGTCTTGTTACTATGCATAAGATGCCTAGGATTTGG 345
||| | |||||||||||||| |||| ||| ||||| |||||||| ||||||||||| |||
Sbjct 265 TCT-TGAACAATACTTTTGAAAGAGCTCTGGTTACGATGCATAACATGCCTAGGATCTGG 323
Query 346 GT-TATGTATCTTCAGACTCTTACGGTT--CAGCA-ATTGATTACTCGGACTCGGCGAAC 401
| | | |||||||| || | || || ||| | |||||||||| ||||||| |||
Sbjct 324 CTCT-TCTATCTTCAAAC-CCTA-ATTTCGCAG-AGATTGATTACTAGGACTCGTAAAAC 379
Query 402 TTTCGACCGTGCGCTTTGTGCT-TTACCTGTTACTCAACATGATAGGATTTGGGAACCGT 460
|||||| || || || | |||| || || |||| ||||||| ||| ||||||||| | |
Sbjct 380 TTTCGATCGGGCTCTCTCTGCTCTT-CCCGTTAGACAACATGGTAGAATTTGGGAATCTT 438
Query 461 ATCTTGTGTTTGTGAGTCA-AAATGG-GATTCCTATTGAGACTTC-ACTTAGGGTTTATA 517
|||| | ||||||| ||| || || | ||||| | |||||||| | |||| |||||||
Sbjct 439 ATCTCGAATTTGTGACTCAGGAA-GGTG-TTCCTGTGGAGACTTCGA-TTAGAGTTTATA 495
Query 518 GAAGGTATCTTATG-TATGATCCTAGTCATATTGAGGAGTTTATTGAGTTTCTTG-TCAA 575
|||||||||||| | |||||||| ||||| |||||| | ||||||||||||| || | ||
Sbjct 496 GAAGGTATCTTA-GCTATGATCCAAGTCACATTGAGAATTTTATTGAGTTTC-TGTTGAA 553
Query 576 GTCTGAG-CGTTGGCAAGAATCTGCAGAGAGA-TTAGCTTCTGTGTTGAAT-G---ATGA 629
||| | | ||||||||||| || |||||| | || || |||||||||| | | ||
Sbjct 554 GTC-GGGTCGTTGGCAAGAGTCCGCAGAG-TATTTGGCCTCTGTGTTGAGTGGCCAAT-T 610
Query 630 T-AAGTTTTATTCTATTAAAGGGAAGA-CTAAGCATAAACTGTGGTTGGAGT-TG-TGTG 685
| || ||| | |||| |||||| |||| | | ||| |||||| |||| | || | ||
Sbjct 611 TCAA-TTTCAGTCTAGTAAAGGCAAGAGC-ATTTATAGCCTGTGGATGGA-TCTGCT-TG 666
Query 686 AGCTTCTTGTGCATCATGCTAATGTGATTTCGGGTCTTAATGTTGATGCTATTATAAGAG 745
|| || |||| | |||||||||| | |||| |||||| |||| || |||||||| ||||
Sbjct 667 AGGTTGTTGTTAACCATGCTAATGAGGTTTCTGGTCTTGATGTGGAGGCTATTATCAGAG 726
Query 746 GAGGTATTAG-GAAGTTTACGGATGAAGTTGGAATGCTGTGGACTT-CTCTTGCGGATTA 803
|||| ||| | ||||||||||||||||| || ||||| ||||||| | |||||||||||
Sbjct 727 GAGGCATT-GCAAAGTTTACGGATGAAGTAGGGATGCTCTGGACTTAC-CTTGCGGATTA 784
Query 804 TTACATTAGGAAGAATTTGTTGGAGAAAGCTAGGGATATTTATGAGGAGGGTATGATGAA 863
|||||||| |||||| |||| ||||| || | ||||| ||||||||||| ||| ||||
Sbjct 785 CTACATTAGAAAGAATATGTTCGAGAAGGCCCGTGATATCTATGAGGAGGGGATGGTGAA 844
Query 864 GGTAGTAACTGTAAGGGATTTTAGTGTGATATTTGACGTTTATTCACGGTTCGAGGAGAG 923
||| || || || ||||| |||||||| || ||||| | ||||||| |||| ||||| ||
Sbjct 845 GGTGGTCACAGTTAGGGACTTTAGTGTTATTTTTGATGCTTATTCAAGGTTTGAGGAAAG 904
Query 924 TACG-GTCGCgaagaa-gatgg-agatgatg-agttcaa-gtgatgaagaagatgagaat 978
| | || || || || | ||| ||| | || || || ||| ||||||| || ||||
Sbjct 905 T-TGTGTTGCCAA-AAGGTTGGAAGAAGTTGAAG---AAGGTGGTGAAGAATAT--GAAT 957
Query 979 gaagagaatggcgtagaggatgatgaagagGATGTTCGCCTTAAT-TTTAATCTGTCGGT 1037
| | | ||||||||||| | || ||||| || | ||| || |||||| |
Sbjct 958 ---CCG-A--G-GTAGAGGATGA-G--GAAGATGTCCGTGTCAATACTT-CTCTGTC-CT 1005
Query 1038 GA-AAGAGTTGCAGAGGAAGATACTGAATGGGTTTTGGTTGAATGATGATAATGATGTTG 1096
| ||||| ||||||| || || ||| ||||| |||||||||||||| ||| |||||||
Sbjct 1006 TAGAAGAGATGCAGAGTAAAATCCTGGGTGGGTATTGGTTGAATGATGGTAACGATGTTG 1065
Query 1097 ATCTGAGATTGGCTCGTTTGGAAGAACTGATGAACAGAAGACCTGCACTGGCAAACAGTG 1156
||||| |||||||||| | ||| |||||| ||||||| ||||| ||||| ||||||||||
Sbjct 1066 ATCTGCGATTGGCTCGCTGGGAGGAACTGCTGAACAGGAGACCCGCACTTGCAAACAGTG 1125
Query 1157 TGCTCCTT-AGGCAGAATCCTCACAATGTTGAGCAATGGCATCGTAGAGTCAAAATATTT 1215
| || ||| ||||| || || ||||||||||| |||||||||||||||||||| | |||
Sbjct 1126 TTCT-CTTGAGGCAAAACCCACACAATGTTGAACAATGGCATCGTAGAGTCAAGTTGTTT 1184
Query 1216 GAGGGAAACGCAGCA-AAGCAGATTCTCACATACACAGAAGCAGTGAGGACTGTTGATCC 1274
|||||| |||||| | |||||||| || || ||||||||||| ||||||||||| |||||
Sbjct 1185 GAGGGAGACGCAG-AGAAGCAGATACTGACTTACACAGAAGCTGTGAGGACTGTGGATCC 1243
Query 1275 TATGAAAGCAGTTGGGAAG---CCTCACACCTTGTGGGTTGCTTTTGCCAAGTTGTATGA 1331
|||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1244 CATGAAAGCAGTTGGTAAGTCTCCTCACACGTTATGGGTTGCTTTTGCCAAGTTGTATGA 1303
Query 1332 AAACCACAAAGACCTGGTCAATACTAGAGTGATTTTTGACAAAGCAGTCCAGGTAAACTA 1391
|| |||||| || |||||||| | |||||| || | |||||||||||||| ||||||||
Sbjct 1304 AACCCACAACGATTTGGTCAATGCAAGAGTGGTTCTGGACAAAGCAGTCCAAGTAAACTA 1363
Query 1392 CAAAACCGTAGATCATCTCGCCAGTGTGTGGTGTGAGTGGGCTGAGATGGAGCTGAGACA 1451
||||||||| |||||| | ||| | |||||||||||||||| | |||||||||||||||
Sbjct 1364 CAAAACCGTGGATCATTTGGCCTGCATGTGGTGTGAGTGGGCCGCGATGGAGCTGAGACA 1423
Query 1452 CAAGAATTTCAAAGGAGCATTAGAGCTGATGAGGCGTGCTACAGCTGTACCGACAGTAGA 1511
||| |||||||||||||| |||||||| |||||||| |||||||||| ||| | |||||
Sbjct 1424 CAATAATTTCAAAGGAGCTTTAGAGCTAATGAGGCGGGCTACAGCTGCACCCTCGGTAGA 1483
Query 1512 AGTCAGACGGAGAGTTGCTGCTGATGGCAATGAACCAGT-CCAG---A-T-GAAGCTGCA 1565
||||||| ||||||| || || ||| || ||||||| |||| | | ||||||| |
Sbjct 1484 AGTCAGAAACAGAGTTGTTGATGTTGGGAACGAACCAGAACCAGTGCAGTTGAAGCTGTA 1543
Query 1566 TA-GATCCTTGAGGCTTTGGTC-CTTTTATGTTGATCTGGAAGAAAGTCTGGGGACGTTA 1623
|| || || |||||| ||||| || | ||||||||||||| |||||| | ||||| |
Sbjct 1544 TAAGACCCC-GAGGCTGTGGTCACTCT-ATGTTGATCTGGAGGAAAGTGTAGGGACACTG 1601
Query 1624 GAATCGACAAGAGCTGTC-TATGAGAAAATATTGGATTTGAGAATAGCTACACCTCAAAT 1682
||||| || ||| | | | || |||| ||| |||| || |||||||| |||||||| ||
Sbjct 1602 GAATCCACGAGATCAG-CGTACGAGAGGATACTGGAATTAAGAATAGCCACACCTCATAT 1660
Query 1683 TATAATGAATTATGCTTTTCTTCTTGAGGAAAATAAGTACTTTGAAGATGCGTTCAAGGT 1742
|||| |||| || ||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct 1661 TATATTGAACTACGCTCAGCTTCTTGAGGAAAACAACTACTTTGAAGAGGCGTTCAAGGT 1720
Query 1743 GTATGAAAGAGGTGTCAAGATATTCAAGTATCCTCATGTGAAAGACATTTGGGTAACCTA 1802
||||||||||||||| ||||| || ||||||||||||||||||||||| ||| | || ||
Sbjct 1721 GTATGAAAGAGGTGTGAAGATGTTTAAGTATCCTCATGTGAAAGACATATGGCTGACGTA 1780
Query 1803 TCTTACAAAGTTTGTCAAGAGATACGGGAAGACAAAGCTGGAGCGGGCAAGAGAGTTGTT 1862
||| ||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 1781 TCTCACAAAGTTTGTTAAGAGATATGGGAAGACAAAGGTGGAGCGGGCGAGAGAGTTGTT 1840
Query 1863 TGAGCATGCTGTTTCAATGGCCC---CATCTGATGCTG-TCAGGACGTTATACCTTCAGT 1918
|||| |||||||||| |||| |||||||||||| || || | ||||||| |||
Sbjct 1841 TGAGAATGCTGTTTCGATGGTAAGTTCATCTGATGCTGCTCT--AC-T-ATACCTTGAGT 1896
Query 1919 ATGCTAAGCTAGAAGAGGATTATGGTCTGGCTAA-ACGAGCCATGAAGGTTTATGAGGAA 1977
|||| || | ||||| |||||||||||||| || | | || ||| | || || | ||
Sbjct 1897 ATGCAAAATTTGAAGAAGATTATGGTCTGGCGAAGAGG-GCGATGGATGTGTACAAACAA 1955
Query 1978 GCCACCAAAAAAGTTCCAGAAG-GTCAGAAGCTTGAGATGTACGAGATATACATTTCCCG 2036
|| |||| || |||| | || | | |||||||||||||||| ||||||||||| | ||
Sbjct 1956 GCTACCAGAAGAGTTGCGGATGAGA-AGAAGCTTGAGATGTATGAGATATACATAGCTCG 2014
Query 2037 AGCAGCGGAGATATTTGGTGTTCCCAGAACAAGGGAAATATATGAAC-AAGCAATTGAAT 2095
|||| |||| ||||||| || | ||| ||||| |||| | | |||| || ||||
Sbjct 2015 TTCAGCAGAGAGGTTTGGTGCTCAGAAAACTAGGGAGATAT-TCCAGGAAGCCATAGAAT 2073
Query 2096 C-T--GGGCTTCCACATAAGGATGTGAAGATCATGTGCATAAAATTTGCTGAGCTGGAGA 2152
| | |||||| || | || ||||||||||| |||||||| | |||||| ||||||||||
Sbjct 2074 CATCTGGGCTTGCAGAGAATGATGTGAAGATGATGTGCATCAGATTTGCAGAGCTGGAGA 2133
Query 2153 GAAGCTTGGGAGAGATT-GATCGTGCTCGTGCACTCTATAAGTATTCCTCCCAGTTTGCA 2211
|||| ||||||| | | ||||| ||| ||||| |||| |||||| |||| |||||||||
Sbjct 2134 AAAGCATGGGAGA-AGTCGATCGAGCTTGTGCAGTCTACAAGTATGCCTCACAGTTTGCA 2192
Query 2212 GATCCAAGGTCCGACCCTGAATTCTGGAACAAATGGCATGAGTTCGAGGTCCAGCACGGG 2271
|| || || | || | || | ||||||||||| || || | | || ||
Sbjct 2193 GACCC----TCA-AG--TG--T---GGCAGAAATGGCATGACTTGGAAATTGAACATGGC 2240
Query 2272 AACGAAGATACCTACAGAGAAATGCTCCGTATCAAGCGAAGTGTTTC 2318
|||||||||||||||||||||||||| || || ||||||| ||||||
Sbjct 2241 AACGAAGATACCTACAGAGAAATGCTTCGCATTAAGCGAACTGTTTC 2287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110347439765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5