BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G28750.1

Length=648
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489661 jgi|Araly1|489661|fgenesh2_kg.6__2795__AT5G28750.1         765    0.0  


> Ahg489661 jgi|Araly1|489661|fgenesh2_kg.6__2795__AT5G28750.1
Length=535

 Score =  765 bits (414),  Expect = 0.0
 Identities = 473/501 (94%), Gaps = 6/501 (1%)
 Strand=Plus/Plus

Query  1    CACAGATAACATTTAGAACCAGaa-aa-aaaaaaaaaaGTAGCAGCAATGGCGACATCTG  58
            |||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct  1    CACAGATAACATTTAGAACCAGAAGAAGAAAAAAACAAGTAGCAGCAATGGCGACATCTG  60

Query  59   TTGCGActctatcttctccaccaccagtatctctacctctcctctcatcatctcgctctt  118
            ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   TTGCGACTCTATCTTCTCCTCCACCAGTATCTCTATCTCTCCTCTCATCATCTCGCTCTT  120

Query  119  ccttcttctccaATTGCTTCACAGTCACGACCCGACCAAAC-ACTCGTTCTCTGGTAGCG  177
            |||||||||||||||| |||||||||||||||||||||||| || |||||| |||| |||
Sbjct  121  CCTTCTTCTCCAATTGTTTCACAGTCACGACCCGACCAAACAAC-CGTTCTTTGGTTGCG  179

Query  178  ATTGGA-CGCAGAATCCGACAAGAACCAACGAGAAAGCCACTGACTTGTAATGCTTTGTT  236
            ||| || || ||||||||||| ||||| ||| |||||| ||| |||||||||||||||||
Sbjct  180  ATTCGACCG-AGAATCCGACAGGAACCGACGCGAAAGCGACTCACTTGTAATGCTTTGTT  238

Query  237  TGGTCTCGGTGTGCCTGAGCTTGCTGTGATTGCTGGCGTCGCTGCGTTGCTTTTTGGACC  296
            |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct  239  TGGTCTCGGTGTACCTGAACTTGCTGTGATTGCTGGCGTCGCTGCGTTGCTCTTTGGACC  298

Query  297  TAAGAAACTTCCTGAGATTGGCAAGAGTATTGGCAAAACCGTCAAGAGCTTTCAACAGGC  356
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  TAAGAAGCTTCCTGAGATTGGCAAGAGTATTGGCAAAACCGTCAAGAGCTTTCAACAGGC  358

Query  357  TGCAAAAGAGTTCGAGTCTGAGCTTAAGACAGAACCCGAAGAGTCTGTTGCAGAATCATC  416
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  359  TGCAAAAGAGTTCGAGTCTGAGCTTAAGACAGAACCCGAAGATTCTGTTGCAGACTCATC  418

Query  417  TCAGGTAGCAACGAGTAACAAAGAAGAGGAGaaaaaaaCTGAGGTTTCTTCAAGCTCAAA  476
            ||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  419  TCAGGTAACAATGAGCAACAAAGAAGATGAGAAAAAAACTGAGGTTTCTTCAAGCTCAAA  478

Query  477  GGAGAATGTATGAAGATGAGA  497
            |||||||||||||||||||||
Sbjct  479  GGAGAATGTATGAAGATGAGA  499



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23750577291


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5