BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28823.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344066 jgi|Araly1|344066|fgenesh1_pg.C_scaffold_4000408 418 7e-116
Ahg922091 jgi|Araly1|922091|scaffold_103372.1 379 3e-104
Ahg926656 jgi|Araly1|926656|scaffold_202217.1 346 3e-94
Ahg917661 jgi|Araly1|917661|Al_scaffold_0008_2412 316 3e-85
Ahg952246 jgi|Araly1|952246|scaffold_4800002.1 209 4e-53
Ahg911526 jgi|Araly1|911526|Al_scaffold_0001_1780 134 3e-30
> Ahg344066 jgi|Araly1|344066|fgenesh1_pg.C_scaffold_4000408
Length=576
Score = 418 bits (226), Expect = 7e-116
Identities = 304/341 (89%), Gaps = 7/341 (2%)
Strand=Plus/Plus
Query 1088 CATTAGATACGGCTATTGTTTCTAATGGTGCAGCGATATTGAAAGGGTTTCACAAAACTG 1147
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 5 CATTAGATACGGCTGTTGTTTCTAATGGTGCAGCGATATTGAACGGGTTTCACCAAACAG 64
Query 1148 TTGATGACACATCGGTTTTACCCCTTCAA---GTTATAGGTACTATCACCGACTTTCTCT 1204
||| |||| |||||||| ||||| |||| ||| || | ||| |||||| |||||||
Sbjct 65 TTGTTGACTCATCGGTTAAACCCCATCAAGTTGTTGTAAATCCTAACACCGAGTTTCTCT 124
Query 1205 CCTCTTCAAACTCGAAAGAAGAAACTGTCATTGGCTTGGGATCAGTAGCAATTACTGATG 1264
||||||||||||| ||||||||| ||||| |||||||| ||||| |||||||||||||||
Sbjct 125 CCTCTTCAAACTCAAAAGAAGAAGCTGTCTTTGGCTTGAGATCATTAGCAATTACTGATG 184
Query 1265 CAAGTAAAGATGTGGTTGTCGGTCCTCAGCTAGTTGAGAAGGAGGTCTTGCAAATTTCAG 1324
||||||| | ||||||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 185 CAAGTAAGGTTGTGGTTGTCGTTCATCAGCTAGTTGAGAAGGACGTCTTGCAAATTTCAG 244
Query 1325 ATTCAAATACTGCCATACTTTCTTCAACCATGAAAGTGATGGCTACTCCCGCAAAGGTCT 1384
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 245 ATTCAACTACTGCCATGCTTTCTTCAACCATGAAAGTGATGGCTACTCCCGCAAAAGTCT 304
Query 1385 C-TACAAATA-ACACTACCTCTACTGCAGGGGTCAAATCTA 1423
| | |||||| | ||||||||| || |||||||||||||||
Sbjct 305 CCT-CAAATATA-ACTACCTCTGCTTCAGGGGTCAAATCTA 343
Score = 268 bits (145), Expect = 7e-71
Identities = 193/215 (90%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 1484 CATCGGATGTGGTTCTGCGCGAAGATTCAAACATGGTTGATTCTGACAAGTCTGAGGATT 1543
||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |
Sbjct 344 CATCGGATGTGGTGCTGCCCGAAGATTCAGACATGGTTGATTCTGACAAGTCTGAGGACT 403
Query 1544 CAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCAGGAAAACATCTCCAAGACA 1603
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||
Sbjct 404 CAGATGAGGATCTCATAATGAATCAAAAGTCACCATTTTCAGAAAAACATCTCCACGACA 463
Query 1604 GACCGTTGCAATT-TCCGAACAAGGCAATAAATATTGGTCATGGAGGAAGAGGAAGAGGA 1662
||||||||||||| || |||||||||||||| |||||||| |||||||||||||||| |
Sbjct 464 GACCGTTGCAATTGTC-GAACAAGGCAATAATTATTGGTCGTGGAGGAAGAGGAAGACGC 522
Query 1663 AGACGAGGTCGAGGAAATCGTGGTCGACGAG-GTG 1696
| | ||||||||||| ||||||||||| |||
Sbjct 523 GGTC----TCGAGGAAATCATGGTCGACGAGTGTG 553
> Ahg922091 jgi|Araly1|922091|scaffold_103372.1
Length=383
Score = 379 bits (205), Expect = 3e-104
Identities = 303/350 (87%), Gaps = 7/350 (2%)
Strand=Plus/Plus
Query 1356 GAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCTCTACTGCAGGGGT 1415
||| ||||||||||||||||||||||||| | ||| || ||||||||| || |||||||
Sbjct 14 GAATGTGATGGCTACTCCCGCAAAGGTCTTTTCAATTATCACTACCTCGGCTTCAGGGGT 73
Query 1416 CAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATAAATTTGCGGTGCT 1475
| | ||||||||| | | |||||| |||||||| ||||| |||||||||| ||| |||||
Sbjct 74 CCATTCTAGTACT-A-A-TTCTTTTCGCAAAGCCTCTAGCTCAAATAAATATGCAGTGCT 130
Query 1476 GGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCA-AACATGGTTGATTCTGACAAG 1533
||||||||||||||||||||| |||| | || |||||| || | | || |||| | |
Sbjct 131 GGATTTAGCATCGGATGTGGTACTGC-CTGATGATTCAGAAGA-AGATGTTTCTTCCGGG 188
Query 1534 TCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCAGGAAAACAT 1593
|| || ||||| |||||||||||||| ||||||| |||||| ||||||||| |||||||
Sbjct 189 TCGGATGATTCGGATGAGGATCTCATTTTGAATCTCAAGTCACCATTTTCAGAAAAACAT 248
Query 1594 CTCCAAGACAGACCGTTGCAATTTCCGAACAAGGCAATAAATATTGGTCATGGAGGAAGA 1653
||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||
Sbjct 249 CTCCAAGACAGACCGTTGCAATTGCCGATCAAGGCAATTAATATTGGTCGTGGAGGAAGA 308
Query 1654 GGAAGAGGAAGACGAGGTCGAGGAAATCGTGGTCGACGAGGTGGGTTTGG 1703
||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 309 GGAAGGGGAAGACGCGGTCGAGGGAATCGTGGTCGACGAGGTGGGTTTGG 358
> Ahg926656 jgi|Araly1|926656|scaffold_202217.1
Length=1059
Score = 346 bits (187), Expect = 3e-94
Identities = 307/364 (84%), Gaps = 11/364 (3%)
Strand=Plus/Plus
Query 1344 TTCTTCA-ACCATGAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCT 1402
||||||| | || ||| ||||||||||||||||||||||| | | ||| || ||||||||
Sbjct 678 TTCTTCAGA-CACGAATGTGATGGCTACTCCCGCAAAGGTTTTTTCAATTATCACTACCT 736
Query 1403 CTACTGCAGGGGTCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATA 1462
| || ||| ||| |||||||| || | | |||||| ||||||||||||||||||||||
Sbjct 737 CGGCTTCAGTTGTCCAATCTAGTGCT-A-A-TTCTTTTCGCAAAGCTTCTAGTTCAAATA 793
Query 1463 AATTTGCGGTGCTGGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCAAACATG-G- 1519
||||||| ||||| |||||||||||||||||||| |||| | || |||||| | | | |
Sbjct 794 AATTTGCAGTGCTCGATTTAGCATCGGATGTGGTACTGC-CAGATGATTCAGA-AGGAGA 851
Query 1520 TTGATTCTGACAAGTCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACAT 1579
|| |||| | ||| || |||||||||||||||||||| ||||||| |||||| |||
Sbjct 852 TTT-TTCTTCCGGGTCGGATGATTCAGATGAGGATCTCATTTTGAATCTTAAGTCATCAT 910
Query 1580 TTTCAGGAAAACATCTCCAAGACAGACCGTTGCAATTTCCGAACAAGGCAATAAATATTG 1639
|||||| |||| |||| || ||||||||||||||||| |||| || |||||||||||| |
Sbjct 911 TTTCAGAAAAATATCTACATGACAGACCGTTGCAATTGCCGATCATGGCAATAAATATGG 970
Query 1640 GTCATGGAGGAAGAGGAAGAGGAAGACGAGGTCGAGGAAATCGTGGTCGACGAGGTGGGT 1699
||| ||||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||
Sbjct 971 GTCGTGGAGGAAGAGGAGGGGGAAGACGCGGTCGAGGGAATCGGGGTCGACGAGGTGGGT 1030
Query 1700 TTGG 1703
||||
Sbjct 1031 TTGG 1034
> Ahg917661 jgi|Araly1|917661|Al_scaffold_0008_2412
Length=642
Score = 316 bits (171), Expect = 3e-85
Identities = 298/358 (83%), Gaps = 13/358 (4%)
Strand=Plus/Plus
Query 1344 TTCTTCA-ACCATGAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCT 1402
||||||| | || ||| ||||||||||||||||||||||| | | ||| || ||||||||
Sbjct 279 TTCTTCAGA-CACGAATGTGATGGCTACTCCCGCAAAGGTTTTTTCAATTATCACTACCT 337
Query 1403 CTACTGCAGGGGTCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATA 1462
| || ||| ||| |||||||| || | | |||||| ||||||||||||||||||||||
Sbjct 338 CGGCTTCAGTTGTCCAATCTAGTGCT-A-A-TTCTTTTCGCAAAGCTTCTAGTTCAAATA 394
Query 1463 AATTTGCGGTGCTGGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCAAACATG-G- 1519
||||||| ||||| |||||||||||||||||||| |||| | || |||||| | | | |
Sbjct 395 AATTTGCAGTGCTCGATTTAGCATCGGATGTGGTACTGC-CAGATGATTCAGA-AGGAGA 452
Query 1520 TTGATTCTGACAAGTCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACAT 1579
|| |||| | ||| || |||||||||||||||||||| ||||||| |||||| |||
Sbjct 453 TTT-TTCTTCCGGGTCGGATGATTCAGATGAGGATCTCATTTTGAATCTTAAGTCATCAT 511
Query 1580 TTTCAGGAAAACATCTCCAA-GACAGACCGTTGCAATTTCCGAACAAGGCAATAAATATT 1638
|||||| |||| |||| | | ||||||||||||||| |||| |||||||||||||||
Sbjct 512 TTTCAGAAAAATATCTATATTG-CAGACCGTTGCAATTCCCGATCAAGGCAATAAATATG 570
Query 1639 GGTCATGGAGGAAGAGGAAGAGGAAGACGAGGTCGAGGAAATCGTGGTCGACGAGGTG 1696
|||| ||||||||||||| | |||||| | |||||||| ||||| |||||||||||||
Sbjct 571 GGTCGTGGAGGAAGAGGAGGGGGAAGATGCGGTCGAGGGAATCGGGGTCGACGAGGTG 628
> Ahg952246 jgi|Araly1|952246|scaffold_4800002.1
Length=238
Score = 209 bits (113), Expect = 4e-53
Identities = 195/233 (84%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 1356 GAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAA-TAACACTACCTCTACTGCAGGGG 1414
||| ||||||||||||||||||||||| | | |||| || ||||||||| || ||| ||
Sbjct 14 GAATGTGATGGCTACTCCCGCAAAGGT-TTTTCAAATTATCACTACCTCGGCTTCAGTGG 72
Query 1415 TCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATAAATTTGCGGTGC 1474
|| |||||||| ||||||| | ||| ||||||||||||||||||||||||||||| ||||
Sbjct 73 TCCAATCTAGTGCTAATAC-T-TTT-CGCAAAGCTTCTAGTTCAAATAAATTTGCAGTGC 129
Query 1475 TGGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCAAACATGGTTGATT--CTGACA 1531
| |||||||||||||||||||| |||| | || |||||| | | || |||| || |
Sbjct 130 TCGATTTAGCATCGGATGTGGTACTGC-CAGATGATTCAGA-A-GGA-GATTTTCTTCCG 185
Query 1532 AGTCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCA 1584
||| || |||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct 186 GGTCGGATGATTCAGATGAGGATCTCATTTTGAATCTTAAGTCATCATTTTCA 238
> Ahg911526 jgi|Araly1|911526|Al_scaffold_0001_1780
Length=741
Score = 134 bits (72), Expect = 3e-30
Identities = 119/141 (84%), Gaps = 6/141 (4%)
Strand=Plus/Plus
Query 1344 TTCTTCA-ACCATGAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCT 1402
||||||| | || ||| ||||||||||||||||||||||| | | ||| || ||||||||
Sbjct 606 TTCTTCAGA-CACGAATGTGATGGCTACTCCCGCAAAGGTTTTTTCAATTATCACTACCT 664
Query 1403 CTACTGCAGGGGTCAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATA 1462
| || ||| ||| |||||||| ||||| || |||| |||||||||||||||||||||
Sbjct 665 CGGCTTCAGTTGTCCAATCTAGTGCTAAT--TT-TTTC-GCAAAGCTTCTAGTTCAAATA 720
Query 1463 AATTTGCGGTGCTGGATTTAG 1483
||||||| ||||| |||||||
Sbjct 721 AATTTGCAGTGCTCGATTTAG 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5