BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28830.1
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327025 jgi|Araly1|327025|fgenesh1_pm.C_scaffold_6002245 1266 0.0
> Ahg327025 jgi|Araly1|327025|fgenesh1_pm.C_scaffold_6002245
Length=978
Score = 1266 bits (685), Expect = 0.0
Identities = 893/990 (90%), Gaps = 27/990 (3%)
Strand=Plus/Plus
Query 11 ATGTCGAACACGGCGGGATTAACGATTTTCGACGGTGATCTACTTAGATCCATCGATCTA 70
||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 1 ATGTCGAACTCGGCGGGATTAACGATCTTCGACGGTGATCTTCTTGGATCCATCGATCTC 60
Query 71 AACCTACCGGAACACCAACACAGAGTCACCGGAGCTCAACTTCTCGAGATCTCTGAATCA 130
||||||||||||| ||||||| | |||||||||||||| |||||||| |||||||||||
Sbjct 61 AACCTACCGGAACTCCAACACGGCGTCACCGGAGCTCAGCTTCTCGAAATCTCTGAATCT 120
Query 131 AAAGTTTCTCAATCTCTCTCTGGTCTCTCACTACCACCACATCTCAAAGAA-ACAGCGAT 189
|| ||||||||||||||||| || ||||||||||| |||||||||||| || |||||||
Sbjct 121 AAGGTTTCTCAATCTCTCTCGGGACTCTCACTACCGCCACATCTCAAA-AACGCAGCGAT 179
Query 190 TTCTCAAGTCTCCGATGGAGATCACGTCACTTTCCGTCGTAC-GATGTTCAATAAACAAC 248
||||| || |||||||||||| |||||| |||||| || || || ||||||| ||||||
Sbjct 180 TTCTCGTGTTTCCGATGGAGATGACGTCAATTTCCGACGAACGGA-GTTCAATCAACAAC 238
Query 249 AAGCTTCTGAGAAACTCGGAGTTTTCTTCTCCACCGTCGCCGATGCTCTCAAAGATACAC 308
|||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| || |
Sbjct 239 AAGCTTCTGAGAAACTCGGAGTTTTCTTCTCCGCCGTTGCCGATGCTCTTAAAGAGACTC 298
Query 309 CAATTGTGGTGTCAATATTGGATGGGACTATGTTGAAGATGTTTTTGGAGGATGAAGATG 368
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 CAATTGTGGTGTCAATTTTGGATGGGACTATGTTGAAGATGTTTTTGGAGGACGAAGATG 358
Query 369 ATTTTGCAATGTTGGCAGAGAATTTGTTCACTGATTTAGATGAAGAAGATAAAGGAAAGC 428
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 ATTTTGCAATGTTGGCAGAGAATTTGTTCACTGATTTGGATGAAGAAGATAAAGGAAAGC 418
Query 429 TTTGTAAGAGTGAGATACGAAAAGCTCTTGTACATATGGGTGTTGAAATGGGTGTTCCTC 488
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TTTGTAAAAGCGAGATACGAAAAGCTCTTGTGCATATGGGTGTTGAAATGGGTGTTCCTC 478
Query 489 CACTCTCAGAATTTCCCATATTAGATGATATCATTAAGAAGCATGATGCTGATAGTGATG 548
||||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||
Sbjct 479 CACTCTCAGAATTTCCCATCTTAGATGACATTGTTAAGAAGCATGATGCTGATGGTGATG 538
Query 549 AAGAGCTTGGACAAGCACAATTTGCAGAACTACTGCAACAAGTTCTACAAGAAATAGCAG 608
||||||||||||||||||||||||||||| || |||||| |||||||||||| |||||||
Sbjct 539 AAGAGCTTGGACAAGCACAATTTGCAGAATTATTGCAACCAGTTCTACAAGATATAGCAG 598
Query 609 ATGTCCTTCATGAGAAACCAATAACTATTGTCCTA-AACGTTGAGATTTTCACTGGATCA 667
||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 599 ATGTCCTTCATGAGAAACCAATAACCATTGTCC-AGAACGTTGAGATTTTCACTGGATCA 657
Query 668 AGGATTCGTAAGATTCTTGCTGATGAGAAGACACTCAAGTGTCTTGTAGAGAAAACGATT 727
||||||| ||||||||| | || ||||||| ||||||||||||||||||||||||||||
Sbjct 658 AGGATTCATAAGATTCTGGGAGACGAGAAGAAACTCAAGTGTCTTGTAGAGAAAACGATT 717
Query 728 TTGGAAGAGTCGAACGGAAAAGAGAGCCAAGGATGGTTAAGGACGTTGATAATAAAGAAT 787
|||||||||||||||||||||| || || | | || ||| |||||||||||||||
Sbjct 718 TTGGAAGAGTCGAACGGAAAAG-GAT----GG--G-T-AATGACTTTGATAATAAAGAAT 768
Query 788 GGGAAAGAGTTAGGATTGCCTCCGTTATCTTCAGAAAACGAACAAGTGGCTCTTCTCTAT 847
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 769 GGAAAAGAGTTGGGATTGCCTCCGTTATCTTCAGATAACGAACAAGTGGCTCTTCTCTAT 828
Query 848 GAGACCATAATTTCTCAGTTGAATAACAAA--GA--GAA-----TG---CTTCTACAAAA 895
||||||||| |||||||||||||||||||| || ||| || |||||||||||
Sbjct 829 GAGACCATATTTTCTCAGTTGAATAACAAAAAGAAAGAAACCGCTGATGCTTCTACAAAA 888
Query 896 GAGGAGTTTATGGATGCTCTAAAGGATATACTTAAGAAATTTGAGGAGTTGCTCGAAACA 955
| ||||||||||||||||||||| || ||||| |||| ||||||||| | ||||||||
Sbjct 889 GTGGAGTTTATGGATGCTCTAAAAGACATACTCAAGAGATTTGAGGACCTACTCGAAACC 948
Query 956 ACACCGGTGTTTTCTGCTATCAATCTCTAG 985
|||||||| | |||||||| ||||||||||
Sbjct 949 ACACCGGTATATTCTGCTACCAATCTCTAG 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47043679578
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5