BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28840.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489666 jgi|Araly1|489666|fgenesh2_kg.6__2800__AT5G28840.1 1853 0.0
> Ahg489666 jgi|Araly1|489666|fgenesh2_kg.6__2800__AT5G28840.1
Length=1541
Score = 1853 bits (1003), Expect = 0.0
Identities = 1139/1207 (94%), Gaps = 0/1207 (0%)
Strand=Plus/Plus
Query 120 ctctgactcttctctgcattatctcttcgatctctccaactctccAAAACCTTCCTCAGA 179
||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 85 CTCTGACCCTTCTCTGCATTATCTCTTCGATCTCTCCAACTCTCGAAAACCTTTCTCAGA 144
Query 180 ATGGGAACTACCAATGGAACAGACTATGGAGCATACACATACAAGGAGCTAGAAAGAGAG 239
||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct 145 ATGGGAACTACCAATGGAAGTGATTATGGTGCTTACACATACAAGGAGCTAGAAAGAGAG 204
Query 240 CAATATTGGCCATCTGAGAATCTCAAGATATCAATAACAGGAGCTGGAGGTTTCATTGCA 299
| ||||||||||||||||| ||||||||||| || || || |||||||||||||||||
Sbjct 205 CCTTATTGGCCATCTGAGAAGCTCAAGATATCGATTACCGGCGCTGGAGGTTTCATTGCG 264
Query 300 TCTCACATTGCTCGTCGTTTGAAGCACGAAGGTCATTACGTGATTGCTTCTGACTGGAAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TCTCACATTGCTCGTCGTTTGAAGCACGAAGGTCATTACGTGATTGCTTCTGACTGGAAG 324
Query 360 AAGAATGAACACATGACTGAAGACATGTTCTGTGATGAGTTCCATCTTGTTGATCTTAGG 419
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 325 AAGAATGAGCATATGACTGAAGACATGTTCTGTGATGAATTCCATCTTGTTGATCTTAGG 384
Query 420 GTTATGGAGAATTGTCTCAAAGTTACTGAAGGAGTTGATCATGTTTTTAACTTAGCTGCT 479
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 385 GTTATGGAGAATTGTCTCAAGGTTACTAAAGGAGTTGATCATGTTTTTAACTTAGCTGCT 444
Query 480 GATATGGGTGGTATGGGTTTTATCCAGAGTAATCACTCTGTGATTATGTATAATAATACT 539
|||||||||||||||||||| || ||| ||| || || ||||| |||||||| ||||||
Sbjct 445 GATATGGGTGGTATGGGTTTCATTCAGTCTAACCATTCGGTGATCATGTATAACAATACT 504
Query 540 ATGATTAGTTTCAATATGATTGAGGCTGCTAGGATCAATGGGATTAAGAGGTTCTTTTAT 599
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 505 ATGATTAGTTTCAATATGATCGAGGCGGCTAGGATCAATGGGATTAAGAGGTTCTTCTAT 564
Query 600 GCTTCGAGTGCTTGTATCTATCCAGAGTTTAAGCAGTTGGAGACTACTAATGTGAGCTTG 659
||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||| ||
Sbjct 565 GCTTCTAGTGCTTGTATTTACCCGGAGTTCAAGCAGTTGGAGACTACTAATGTGAGCCTG 624
Query 660 AAGGAGTCAGATGCTTGGCCTGCAGAGCCTCAAGATGCTTATGGTTTGGAGAAGCTTGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 625 AAGGAGTCAGATGCTTGGCCTGCAGAGCCTCAAGATGCTTATGGTTTGGAGAAACTTGCA 684
Query 720 ACGGAGGAGTTGTGTAAGCATTACAACAAAGATTTTGGTATTGAGTGTCGAATTGGAAGG 779
|||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 685 ACGGAGGAGTTGTGCAAGCATTACAACAAAGATTTTGGAATTGAGTGCCGCATTGGAAGG 744
Query 780 TTCCATAACATTTATGGTCCTTTTGGAACATGGAAAGGTGGAAGGGAGAAGGCTCCAGCT 839
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 745 TTCCATAACATTTATGGTCCATTTGGAACATGGAAAGGTGGAAGGGAGAAGGCTCCAGCT 804
Query 840 GCTTTCTGTAGGAAGGCTCAGACTTCCACTGATAGGTTTGAGATGTGGGGAGATGGGCTT 899
||||||||||| ||||||| || ||||| ||||||||||||||||||||||| |||||
Sbjct 805 GCTTTCTGTAGAAAGGCTCTCACCTCCACAGATAGGTTTGAGATGTGGGGAGACGGGCTA 864
Query 900 CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGGTTGACAAAA 959
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 865 CAAACCCGTTCTTTTACCTTCATCGATGAGTGCGTTGAAGGTGTACTCAGGTTGACAAAA 924
Query 960 TCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATGGTGAGCATGAATGAGATG 1019
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 925 TCTGATTTCCGTGAGCCGGTGAACATTGGAAGCGATGAGATGGTGAGCATGAATGAGATG 984
Query 1020 GCTGAGATGGTTCTCAGCTTTGAGGAAAAGAAGCTTCCAATTCACCACATTCCTGGCCCG 1079
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 985 GCTGAGATGGTTCTCAGCTTTGAGGAGAAGAAGCTTCCAATTCACCACATTCCAGGCCCA 1044
Query 1080 GAAGGTGTTCGTGGTCGTAACTCAGACAACAATCTGATCAAAGAAAAGCTTGGTTGGGCT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GAAGGTGTTCGTGGTCGTAACTCAGACAACAATCTGATCAAAGAAAAGCTTGGTTGGGCT 1104
Query 1140 CCTAATATGAGATTGAAGGAGGGGCTTAGAATAACCTACTTCTGGATAAAGGAACAGATC 1199
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 CCAAATATGAGATTGAAGGAGGGGCTTAGAATAACCTACTTCTGGATAAAGGAACAGATC 1164
Query 1200 GAGAAAGAGAAAGCAAAGGGAAGCGATGTGTCGCTTTACGGGTCATCAAAGGTGGTTGGA 1259
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1165 GAGAAAGAGAAAGCAAAAGGAAGCGATGTGTCCCTTTACGGGTCATCAAAGGTGGTTGGA 1224
Query 1260 ACTCAAGCACCGGTTCAGCTAGGCTCACTCCGCGCGGCTGATGGAAAAGAGTGAAGTTCA 1319
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1225 ACTCAAGCGCCGGTTCAGCTAGGCTCACTCCGCGCAGCTGATGGAAAAGAGTGAATTTCA 1284
Query 1320 CCAAAGT 1326
|||||||
Sbjct 1285 CCAAAGT 1291
Score = 311 bits (168), Expect = 1e-83
Identities = 234/263 (89%), Gaps = 15/263 (6%)
Strand=Plus/Plus
Query 1354 AAGTTCAGCAAAATGTTTAGATATATTTTTAGGTAGCTTCCTATTAAAAAAGCAATAATA 1413
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 1288 AAGTTCAGCAAAATGTTTAGATATATGTTTAGGTAGCTTCCTATT-AAAAAGCTATAATA 1346
Query 1414 AGTGTTTTGGATTTTGGTTCCTTCTATTCTGCTAATCCTTGTTTATGTTTAGTTGAAAAA 1473
||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| ||||
Sbjct 1347 AGTGTTTTGGATTTTGGTTCCTTCTCTTCTGCTAATTCTTGTTTATGTTTACTTGGAAAA 1406
Query 1474 GTTTGCTTGCATTGTTAAGTCTGTTAT-C-ATAT-T-ATTGTGGTCCTTTCATTCACAGT 1529
|||||| ||||||||||| |||| | || | | ||||||||||||||| || ||
Sbjct 1407 GTTTGC----ATTGTTAAGTCAATTATACGATGTGTTATTGTGGTCCTTTCA--CA--GT 1458
Query 1530 ATGTATGTTTATCATCATAGTCAAGTTGATGTCGTGGTCCTCTCACGGACCAGTA-C-AA 1587
|||||||||||| |||| ||||| ||||||| |||||||||||||||||||||| | ||
Sbjct 1459 ATGTATGTTTATTGTCATCGTCAACTTGATGTTGTGGTCCTCTCACGGACCAGTAACTAA 1518
Query 1588 GTAAGTGGCTTGTGTTTTTTCTT 1610
|||||||||||||||||||||||
Sbjct 1519 GTAAGTGGCTTGTGTTTTTTCTT 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5