BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28900.1
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489669 jgi|Araly1|489669|fgenesh2_kg.6__2803__AT5G28900.1 2920 0.0
Ahg914801 jgi|Araly1|914801|Al_scaffold_0001_5055 830 0.0
> Ahg489669 jgi|Araly1|489669|fgenesh2_kg.6__2803__AT5G28900.1
Length=1947
Score = 2920 bits (1581), Expect = 0.0
Identities = 1834/1951 (94%), Gaps = 37/1951 (2%)
Strand=Plus/Plus
Query 191 TCTCGACTTTGATGCGATTGATTAAATATGG-TGGATACGGTTATTCCCGGAGATATGGC 249
||||||||||| | | |||||| ||||||| ||| | || || |||||||||| |||||
Sbjct 28 TCTCGACTTTG-TTC--TTGATTGAATATGGTTGG-TTCGATTGTTCCCGGAGACATGGC 83
Query 250 TTGTTTGGATGCAGATTTGTTGCAGCTTCAGGAAATGTCTTCCTTTGTTCTCAATTCTAA 309
||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| ||
Sbjct 84 TTGTTTGGATGTAGATTTGTTGCAGCTTCAAGAAATGTCATCCTTTGTTCTGAATTCGAA 143
Query 310 ACCTGGATTCACTCAGAAGCTCTTCGACCAGTGGCTTTCTCTTCCCGAAGCTCAGCGACA 369
||||||||||||||| ||||||||||||||||||||||||||||||||| | || |||||
Sbjct 144 ACCTGGATTCACTCAAAAGCTCTTCGACCAGTGGCTTTCTCTTCCCGAATCCCATCGACA 203
Query 370 GGTTGGATCATTGCTTAAGGATGCTGTAGCTGGAGCTCCTATCAATGTTACTGGAAGTGC 429
| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 204 GATTGGATCATTGCTTAAGGATGCTATAGCTGGAGCTCCTATAAATGTTACTGGAAGTGC 263
Query 430 ATCGGGTTCTAATTCTGCCACTATACCATCTATGTTTCCTGCGGGAAGTGCTCCTCCGCT 489
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 264 ATCGGGTTCAAATTCTGCTACTATACCATCTATGTTTCCTGCGGGAAGTGCTCCTCCGCT 323
Query 490 TTCACCAAGGAGTTGTGGTTCACCCCGTACAACCAAACAGAGAGCCCCTTCTAACTTAGG 549
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 324 TTCGCCAAGGAGTTGTGGTTCACCGCGTACAACCAAACAGAGAGCCCCTTCTAACTTAGG 383
Query 550 TTCTACTCTCAAAGTAGTCAACGAGCCTGTTAAAGAGCCTATACCTCAGTTTTATTTCCA 609
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 384 TTCTACTCTGAAAGTTGTCAACGAGCCTGTTAAAGAGCCAATACCTCAGTTTTATTTCCA 443
Query 610 AAATGGTCGCCCTCCACCAAGCGAGATTAAAGAGCAATGTATGTTTAGAATCAATCACTT 669
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 444 AAATGGTCGCCCCCCACCAAGCGAGATAAAAGAGCAATGTATGTTTAGAATCAATCACTT 503
Query 670 CTTTTATGGTCACATGGATGGCTTGCAGATACAAGAATTCAAGTTAGTCACCAGAGAAAT 729
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 504 CTTTTATGGTCACATGGATGGGTTACAGATACAAGAATTCAAATTAGTCACCAGAGAAAT 563
Query 730 CTGCAAGCTCCCATCTTTCTTCTCCACTTCCCTTTTCCGGAAGATCGAT-CTCAACAATA 788
|||||||||||||||||||||||||||||| ||||||| |||||||||| | ||| ||||
Sbjct 564 CTGCAAGCTCCCATCTTTCTTCTCCACTTCACTTTTCCAGAAGATCGATGC-CAATAATA 622
Query 789 CAGGTTTTGTTACTAGAGATGCATTTATTGATTTTTGGGTAAACGGGAACATGTTGATAA 848
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 623 CAGGTTTTGTTACTAGAGAAGCATTTATTGATTATTGGGTAAACGGGAACATGTTGATAA 682
Query 849 TGGATACAACGACCCAAATCTTCAAGATACTAAAGCAGAAAGATCAGAGTTTCATTGTTA 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 683 TGGATACAACGACCCAAATCTTCAAGATACTAAAGCAGAAAGATCAGAGTTTCATTGTGA 742
Query 909 AGGATGATTTCAAACCACTACTCAAAGAACTGTTGGCGACGCATCCTGGGCTAGAGTTCC 968
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 743 AGGATGATTTCAAACCCCTACTTAAAGAACTGTTGGCGACGCATCCTGGGCTAGAGTTCC 802
Query 969 TGCAATCCACACCTGAATTCCAAGAAAGATATGCTGAAACTGTCACCTACCGAATATTTT 1028
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TGCAATCCACACCTGAATTTCAAGAAAGATATGCTGAAACTGTCACCTACCGAATATTTT 862
Query 1029 ATTACATAAATAGATCTGGCAATGGTCGAATTACATTTAGGGAGCTTAAACGGGGAAACT 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 ATTACATAAATAGATCTGGCAATGGTCGAATTACATTTAGGGAGCTTAAACGGGGAAACT 922
Query 1089 TAATTGATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAGATACT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TAATTGATGCTATGCTACATGCTGATGAAGAAGAAGATATTAACAAAGTGTTGAGATACT 982
Query 1149 TCTCGTATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCTGGATACGGATCACG 1208
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 TCTCATATGAGCATTTCTATGTCATATACTGCAAGTTCTGGGAGCTGGATACGGATCACG 1042
Query 1209 ATTTCCTGATTGACAAAGAAAATCTTATGCGATATGGAAACCATGCTCTTACCTACCGGA 1268
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1043 ATTTCCTGATTGACAAAGAAAATCTTATGAGATATGGAAACCATGCTCTTACTTACCGGA 1102
Query 1269 TTGTCGACAGAATATTCTCCCAGGTTGCTAGGAAGTTCACTAACAAAGTTGAAGGGAAGA 1328
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1103 TTGTCGACAGAATATTCTCTCAGGTTGCTAGGAAGTTCACTAGCAAAGTTGAAGGGAAGA 1162
Query 1329 TGGGGTATGAGGACTTTGTCTATTTCATTCTTGCGGAAGAAGATAAATCGTCAGTGCCTA 1388
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1163 TGGGGTATGAGGACTTTGTCTATTTCATACTTGCGGAAGAAGATAAATCGTCAGAGCCTA 1222
Query 1389 GCCTAGAATATTGGTTTAAGTGCATAGACTTGGATGCAAATGGGATTATTACGCGAAATG 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GCCTAGAATATTGGTTTAAGTGCATAGACTTGGATGCAAATGGGATTATTACGCGAAATG 1282
Query 1449 AGATGCAATTCTTTTATGAAGAGCAGTTGCATAGAATGGAGTGCATGGCGCAAGAGGCTG 1508
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1283 AGATGCAATTCTTTTATGAAGAGCAGTTGCATCGAATGGAGTGCATGGCGCAAGAGGCTG 1342
Query 1509 TTCTTTTCGAGGATATCTTATGTCAGATGATTGATATGATCGGACCTGAGAACGAAAGCC 1568
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1343 TTCTTTTCGAGGATATCTTATGTCAGATGATTGATATGATCGGACCAGAGAACGAAAGCC 1402
Query 1569 ATATAACGCTGCATGACCTGAAAGGCTCAAAGCTCTCTGGAAACGTCTTCAACATCCTAT 1628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1403 ATATAACGCTGCATGACCTGAAAGGCTCAAAGCTCTCTGGAAACGTCTTCAACATCCTTT 1462
Query 1629 TTAATCTCAACAAATTTATGGCATTTGAAACCCGGGATCCATTCCTCATTCGTCAGGAGC 1688
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1463 TTAATCTAAACAAATTTATGGCATTTGAAACACGGGATCCGTTCCTCATTCGTCAGGAGC 1522
Query 1689 GAGAGAACCCTACATTGACAGATTGGGACCGTTTTGCACATAGAGAGTATATTAGGCTAT 1748
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1523 GTGAGAACCCTACATTGACAGACTGGGACCGTTTTGCACATAGAGAGTATATTAGGCTTT 1582
Query 1749 CAATGGAAGAAGATGTTGAAGATGCATCTAATGGAAGTGCTGAGGTTTGGGATGAGTCGT 1808
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1583 CAATGGAAGAAGATGTTGAAGATGCATCCAATGGAAGTGCTGAGGTTTGGGATGAGTCGT 1642
Query 1809 CGCTGGAGGCTCCCTTTTGAGTTCATAAAG--AAGAGAAATGTAAAGTCCCTGAGAAGAA 1866
| |||||||||||||| ||||||||| ||| ||| |||||| ||||| ||||||||||
Sbjct 1643 CACTGGAGGCTCCCTTCTGAGTTCATTAAGGTAAGGGAAATGAAAAGTTCCTGAGAAGAT 1702
Query 1867 -CATTTGGAGCTTTGTTGAGGAAGGAAAGTGAAAAACAAACGAAAAGCCGGTAGTATCCT 1925
|||| |||||||||| |||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 1703 TCATT-GGAGCTTTGTCGAGGAATGAAAGTGAAAAACAAACAAAAAGCCGGTAGTGCCCT 1761
Query 1926 CTGTTGAATACCATACTTAGCTTGGATTTGTTTTCTAACTTCTCTTTATTTGTTAGCTGA 1985
|||||||| | | | ||||| |||| |||||||||| | |||| ||| |||||||
Sbjct 1762 CTGTTGAA--C--T--T-AGCTTCGATTCGTTTTCTAACATATCTTCATTGGTTAGCTTT 1814
Query 1986 TTC-TACAGTTATATTTATTAACAATCGTCTAGATTTTACAGTCTTCTTCACCTGTATTG 2044
|| |||||| ||||||||| | | | | | ||||||||||||||||||
Sbjct 1815 TTAATACAGT-ATATTTATT-------G---A--T---A-A-TCTTCTTCACCTGTATTG 1856
Query 2045 CATTCACTTTGCTCTGATGTTTCTATCTCTGGGTGTTACTTCATCATCTCCAGATGTTGA 2104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 CATTCACTTTGCTCTGATGTTTCTATCTCTGGGTGTTACTTCATCATCTCCAGATGTTGA 1916
Query 2105 GACTTGTGAATTTCAATGCTATAGTTCCTTT 2135
|| ||||||| |||||||||||||||||||
Sbjct 1917 GAATTGTGAAAATCAATGCTATAGTTCCTTT 1947
> Ahg914801 jgi|Araly1|914801|Al_scaffold_0001_5055
Length=1608
Score = 830 bits (449), Expect = 0.0
Identities = 1045/1325 (79%), Gaps = 71/1325 (5%)
Strand=Plus/Plus
Query 538 TTCTAA-CTTAGGTTCTACTCTCAAAGTAGTCAAC-GAGCCTGTTAAAGAGCCT-ATACC 594
||| || |||| ||||| ||||||||||||| | || | ||||||||| || || ||
Sbjct 321 TTCCAATCTTA-GTTCTCCTCTCAAAGTAGT-TTCTGATCATGTTAAAGA-ACTCATTCC 377
Query 595 TCAGTTTTATTTCCAAAATGGTCGCCCTCCACCAAGCGAGATTAAAGAGCAATGTAT-GT 653
||||||||| ||| || ||||||| || ||||||| || | |||||||| ||||| |
Sbjct 378 TCAGTTTTACTTCGAAGATGGTCGGCCACCACCAAATGATCTAAAAGAGCAGTGTATAGC 437
Query 654 TTAGAATCAATCA--CTTCTTTTATGGTCACAT--GGATGGCTTGCAGA-TACAAGAATT 708
| || ||||| || ||| |||||||| | ||| |||||| ||||| | | ||||||||
Sbjct 438 TAAG-ATCAA-CAGTCTT-TTTTATGG-C-CATGAGGATGGTTTGCA-ACTGCAAGAATT 491
Query 709 CAAGTTAGTCACCAGAGAAATCTGCAAGCTCCCATC-TTTCTTCTCCACTTCCCTTTTC- 766
|| || ||||| | || ||||||||| | ||||| ||| || ||||| || |||||
Sbjct 492 TAAATTGGTCACTACTGAGATCTGCAAGGTTCCATCATTT-TTTTCCACCACCATTTTCA 550
Query 767 CGGAAGATCGAT-CTCAACAATACAGGTTTTGTTACTAGAGATGCA-TTTATTGATTTTT 824
| ||| | ||| | ||| || || |||||||| | ||||| | | || ||||||| ||
Sbjct 551 AGAAAG-TTGATAC-CAATAACACTGGTTTTGTGAAAAGAGAAG-ACTTCATTGATTATT 607
Query 825 GGGTAAACGGG-AACATGTTGATAATGGATACAACGACCCAAATCTTCA-AGATACTAAA 882
|||| || ||| || ||||||| || ||| | ||| | || || || | | ||||| ||
Sbjct 608 GGGTTAA-GGGAAATATGTTGACAAAGGAGATAACAAGTCAGATATTTACA-ATACTTAA 665
Query 883 GCAGA-AAGATCA-GAGTTTCATTGTTAAGGATGATTTCAAACCACTACTCAAAGAACTG 940
||| | |||||| || | | |||| ||||||||||||| || | ||| |||||||
Sbjct 666 GCA-ACCAGATCACAAG-TACCTTGTCCAGGATGATTTCAAGCCTGTGCTCCAAGAACTA 723
Query 941 TTGGCGACGCATCCTGGGCTAGAGTTCCTGCAATCCACACCTGAATTCCAAGAAAGATAT 1000
|| || || || ||||| || || ||| ||||| |||||||| || || || ||||||
Sbjct 724 TTAGCAACACACCCTGGTCTTGAATTCTTGCAAGGAACACCTGAGTTTCAGGATAGATAT 783
Query 1001 GCTGAAACTGTCACCTACCGAATATTTTATTACATAAATA-GATCTGGCAATGGTCGA-A 1058
||||||||||| | ||| |||| | ||| || ||||||| || ||| ||||| | |
Sbjct 784 GCTGAAACTGTAATATACAGAATCTATTACTATATAAATAGGA-GTGGGAATGGGC-ATC 841
Query 1059 TTACATTTAGGGAGCTTAA-ACGGGGAAACTTAATTGATGCTATGCTA-CATGCTGATGA 1116
||||||| || |||||||| | | ||||| ||| ||||||| |||| | ||||| |||||
Sbjct 842 TTACATTGAGAGAGCTTAAGA-GAGGAAATTTAGTTGATGCAATGC-AGCATGCCGATGA 899
Query 1117 AGAAGAAGATATTAACAAAGTGTTGAGATACTTCTCGTATGAGCATTTCTATGTCATATA 1176
|||||| || || || ||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 900 AGAAGAGGACATCAATAAAGTGTTGAGGTACTTCTCGTATGAACATTTTTATGTCATATA 959
Query 1177 CTGCAAGTTCTGGGAGCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTAT 1236
|||||||||||||||||||||||| ||||| |||||| |||| |||||||| ||||| ||
Sbjct 960 CTGCAAGTTCTGGGAGCTGGATACAGATCATGATTTCTTGATCGACAAAGAGAATCTCAT 1019
Query 1237 GCGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGGTTGC 1296
|||||| | || ||||| || |||||| ||||||||||| |||| || || ||||| |
Sbjct 1020 CCGATATAGTAATCATGCCCTCACCTACAGGATTGTCGACCGAATCTTTTCTCAGGTACC 1079
Query 1297 TAGGAAGTTCACTAACAAA-GTTGAAGGGAAGATGGGGTATGAGGACTTTGTCTA-TTTC 1354
|||||||| |||| ||| | ||||| |||||||| |||||||| ||||| || |||
Sbjct 1080 AAGGAAGTTTACTAGTAAAAGC-GAAGGAAAGATGGGTTATGAGGATTTTGTTTACTTT- 1137
Query 1355 ATTCTT-GCGGAAGAAGATAAATCGTCAGTGCCTAGCCTAGAATATTGGTTTAAGTGCAT 1413
|| || || ||||||||||| || |||| ||||| || || |||||||| ||||||||
Sbjct 1138 ATA-TTAGCTGAAGAAGATAAGTCATCAGAACCTAGTCTTGAGTATTGGTTCAAGTGCAT 1196
Query 1414 AGACTTGGATGCAAATGG-GATTATT-ACGCGAAATGAGATGCAATTCTTTTATGAAGAG 1471
||| |||||||||||||| | || || ||||| || ||| | ||||||||||| || |||
Sbjct 1197 AGATTTGGATGCAAATGGAG-TT-TTGACGCGGAACGAGCTACAATTCTTTTACGAGGAG 1254
Query 1472 CAGTTGCATAGAATGGAGTGCATGGCGCAAGAGGCTGTTCT-TTTCGAGGATAT-CTTAT 1529
||| ||||||||||||| |||||||||||||||||||| || ||| |||||||| || |
Sbjct 1255 CAGCTGCATAGAATGGAATGCATGGCGCAAGAGGCTGTGCTGTTT-GAGGATATTCTG-T 1312
Query 1530 GTCAGATGATT-GATATGATCGGACCTGAGAACGAAAGC--CATATAACGCTGCATGACC 1586
| || || ||| || ||| || ||| ||| ||||| | ||| | | | ||||
Sbjct 1313 GCCA-ATTATTCGACATGGTCAAACCAGAGGACGAAGGGTTCATTTGTC--TAAATGATT 1369
Query 1587 TGAAAGGCTC-AAAGCTCTCTGGAAACGTCTTCAACATCCTATTT-AATCTCAACAAATT 1644
|||| || || ||| || |||||||| ||||| ||||| || ||| || |||||||| ||
Sbjct 1370 TGAAGGGTTCTAAA-CTTTCTGGAAATGTCTTTAACATACT-TTTCAACCTCAACAAGTT 1427
Query 1645 TATGGCATTTGAAACCCGGGATCCATTCCTCATTCGTCAGGAGCGAG-AGAACCCTACAT 1703
|||||| |||||||| || ||||| |||||||||||||||||||| | | || || ||||
Sbjct 1428 TATGGCGTTTGAAACTCGCGATCCCTTCCTCATTCGTCAGGAGCGGGCA-AATCCGACAT 1486
Query 1704 TGACAGATTGGGACCGTTTTGCACATAGAGAGTATATTAGGCTATCAATGGAAGAAGATG 1763
|||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1487 GGACAGAGTGGGATCGTTTTGCTCATAGAGAATATATTAGGCTATCAATGGAAGAAGATG 1546
Query 1764 TTGAAGATGCATCTAATGGAAGTGCTGAGGTTTGGGATGAGTCGTCGCTGGAGGCTCCCT 1823
| |||||||| ||||||||||||||||| | ||||| || | || || |||| |||||
Sbjct 1547 TCGAAGATGCTTCTAATGGAAGTGCTGAAGCATGGGACGA--C-TCACTTGAGGTTCCCT 1603
Query 1824 TTTGA 1828
|||||
Sbjct 1604 TTTGA 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80484687685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5