BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28910.2
Length=1992
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489671 jgi|Araly1|489671|fgenesh2_kg.6__2805__AT5G28910.2 2719 0.0
> Ahg489671 jgi|Araly1|489671|fgenesh2_kg.6__2805__AT5G28910.2
Length=1875
Score = 2719 bits (1472), Expect = 0.0
Identities = 1712/1827 (94%), Gaps = 19/1827 (1%)
Strand=Plus/Plus
Query 136 TTTTGTCTTAGAAAAGAAACAAAAAGTTGGAGAAATATCATGTGATTTCTGGTTGATAGT 195
|||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 63 TTTTATCTCAGAAAAGAAACAAAAAGTTAGAGAAATATCATGTGATTTCTGGTTAATAGT 122
Query 196 TGGTAA-AAGT-GTGGCTACAAAAGAAAGCATTTTCCGAGAAAATCTTTTGTTTTCTTAA 253
|||||| || ||||||| |||||||||||||| | ||||||| ||||||||| |||
Sbjct 123 TGGTAAGGTGTGGTGGCTATAAAAGAAAGCATTTACTGAGAAAAGCTTTTGTTTCCTT-G 181
Query 254 GAAAAAATTTCAGTTACAAAATAGAAGGAGAAGAAATTGGGTTTGGTTATTTAGTGACCA 313
| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 182 GGAAAATTTTCAGTTACAAAATAGAAGGAGAAGAAACTGGGTTTGGTTCTTTAGTGACC- 240
Query 314 ATATAGAGAAAAACTAGAGTTAGTATGAGCATGAAGTCATTAGAAAGAGTGGTTTCAGAG 373
||||| |||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 241 --------AAAAA-TAGAGTTACTATGAGCATGAAGTCATTAGAGAGAGTGGTTTCAGAG 291
Query 374 AGAGCATTAAAACTTGGAAATTCATTTCCATGTCAAATATGTGTAGTTGGGTTTCTATGT 433
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 292 AAAGCATTAAAACTTGGAAATTCATTTCCATGTCAAATCTGTGTAGTTGGGTTTCTATGT 351
Query 434 GGAATCTGTCTCACTTCACTCTTCTTAGCTGCTCTCACTTCTCTTGGCACCTTCGAATTC 493
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 352 GGAATCTGTCTCACTTCACTTTTCTTAGCTGCTCTCACTTCTCTTGGCACCTTCGAGTTC 411
Query 494 GCCGccttctccttcacctcctcttcctctgtttttcctccttgcaattcctccacctct 553
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACCGCCTTCTCCTTCACCTCCACTTCCTCTGTTTTTCCTCCTTGCAATTCCTCCACCTCT 471
Query 554 cACATCATCAATATGGTTGCAAGTATAGACCGGAAACTGAAATGGAAGAACAAAGTTGAG 613
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 472 CACATCATCAATATGGTTGCAAGCATAGACCGGAAACTGAAATGGAAGAACAAAGTTGAG 531
Query 614 ATAGAAGAAGAAGATGAAGTGAAACTTTTGGTCTCTGCTTGGGATAATTTATTACTAAAT 673
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ACAGAAGAAGAAGATGAAGTGAAACTTTTGGTCTCTGCTTGGGATAATTTATTACTAAAT 591
Query 674 GAAGAAGACTTCTTGAAGAAGGTAGGTATTAACAAATCCGATGTACCAAATGGTCCACAT 733
||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 592 GAAGAAGACTTCTTGAAGATGGTAGGGATGAACAAATCCGATGTACCAAATGGTCCACAT 651
Query 734 TTGGAGAATTGTGAGGAGAAGGCTCGAGTTAGGGAGCGTTTGGATACACGTTTGGCGAAC 793
||||| |||||| |||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 652 TTGGATAATTGTAAGGAGAAGGCACGAGTTAGGGAGCGTTTGGATACACGGATAGCGAA- 710
Query 794 T-GGACACTT-CCTCCTTGGATCAGTGGAGGAGATGAAGAGAATTATCCGTTAACGAGGA 851
| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCGGACA-TTCCCTTCTTGGATCAGTGGAGGAGATGAAGAGAATTATCCGTTAACGAGGA 769
Query 852 GAGTGCAAAGAGATATATGGATTCATCAGCATCCTTTGGATTG-CGGAAACAAGAGTCTC 910
|||||||| | || |||||||||||||||||||||||||| || | |||||||||||||
Sbjct 770 GAGTGCAACGTGAGATATGGATTCATCAGCATCCTTTGGACTGTC-AAAACAAGAGTCTC 828
Query 911 AAGTTCCTTGTAGCTGATTGGGAAACACTTCCTGGTTTTGGAATAGGAGCTCAGATAGCT 970
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 829 AAGTTCCTTGTAGCTGATTGGGAAACGCTTCCTGGTTTTGGAATAGGAGCTCAGATCGCT 888
Query 971 GGAATGACTGGTCTACTCGCGATAGCTATAAATGAAAACCGAGTGCTTGTTGCAAATTAC 1030
|||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||| ||
Sbjct 889 GGAATGACTGGTCTTCTCGCGATAGCTATAAAAGAAAACCGAGTGCTCGTTACAAATCAC 948
Query 1031 TACAACCGAGCAGATCATGATGGTTGCAAAGGTTCTTTTCGTGGAAACTGGTCTTGCTAT 1090
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||
Sbjct 949 TACAACCGAGCAGATCATGATGGTTGCAAAGGTTCTTCTCGTGGAAGCTGGTCATGCTAT 1008
Query 1091 TTTCTACAGGAAACGTCAGAAGAGTGTCGAAAACGAGCCTTTGCGATTGTGAAGAAGAGA 1150
||||||| ||||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1009 TTTCTACCGGAAACGTCGGAAGAGTGTCGGAAACGCGCGTTTGCGATTGTGAAGAAGAGA 1068
Query 1151 GAAGCGTGGGAGAGTGGGATTGTTACAGGGAAACAAAATTATAGCACAAAGGAGATTTGG 1210
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 1069 GAAGCGTGGGAGAGTGGGATTGTTACAGGGAAACAAAACTACACCACAAAGGAGATTTGG 1128
Query 1211 GCTGGGGCTATACCAAAGCAATGGGGTAAGCCTTGGAGTTATATGAAGCCAACTACAGAA 1270
|||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 1129 GCTGGGCCTATACCAAAGCTATGGGGTAAGCCTTGGAGTTATATGAAGCCGACTACGGAA 1188
Query 1271 ATCAACGGAAGTTTAATCTCCAATCATCGGAAAATGGATCGGAGATGGTGGAGAGCACAA 1330
||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1189 ATCAATGGAAGTTTAATCTCCAGTCACCGGAAAATGGATCGGAGATGGTGGAGAGCACAA 1248
Query 1331 GCAGTGAGATACTTGATGAGATATCAAACAGAATACACTTGCGGTTTGATGAACATTGCT 1390
|||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 1249 GCAGTGAGATACTTGATGAGATTTCAAACGGAATACACTTGCGGTTTGATGAACGCTGCT 1308
Query 1391 CGAAATTCCGCGTTTGGAAAAGAAGCTGCCAAGATTGTTCTTTCAGCTGGAGATTGGAGA 1450
||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||
Sbjct 1309 CGAAATTCCGCGTTTGGAAAAGAGGCTGCCAAGATTGTTCTCTCTGCAGGAGATTGGAGA 1368
Query 1451 AAGAAGAATAAGAAGATGAGGACAGAGATTGAGGAACAGGTGTGGTCGGATCACAAGCCG 1510
||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||
Sbjct 1369 AAGAAGAATAAGAAGATTAAGACACAGATTGAGGAACAGGTGTGGTCAGATCACAAGCCA 1428
Query 1511 TGGCTTCCAAGGCCAATGCTGAGTGTTCACGTACGGATGGGAGACAAAGCATGCGAGATG 1570
||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1429 TGGATACCAAGGCCAATGCTGAGTGTTCACGTGCGGATGGGAGACAAAGCATGCGAGATG 1488
Query 1571 AGAGTCGCAGCTTTAGAAGAGTACATGCATTTAGCTGATCGGATCAGAGATCGGTTTCCA 1630
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1489 AGAGTCGCAGCTTTAGAAGAATACATGCGTTTAGCTGATCGGATCAGAGATCGGTTTCCA 1548
Query 1631 GAGCTCAACAGGATCTGGCTCTCTACAGAGATGAAGGAAGTGGTGGACAGAAGTAAAGAT 1690
|||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 1549 GAGCTCAACAGGATCTGGCTGTCTACAGAGATGAAGGAAGTTGTGGACAGAAGTGAAGAC 1608
Query 1691 TATGCTCACTGGAGATTCTATTACACGGAAGTGGCAAGACAAGTCGGTAATAAGTCGATG 1750
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1609 TATGCTCACTGGAGATTTTATTACACGAAAGTGGCAAGACAAGTCGGTAATAAGTCCATG 1668
Query 1751 GCTGAGTATGAAGCGAGCCTCGGGAGAGAGATGAGCACAAACTATCCTCTGGTTAACTTC 1810
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1669 GCTGAGTATGAAGCAAGCCTCGGGAGAGAGATGAGTACAAACTATCCTCTGGTTAACTTC 1728
Query 1811 TTAATGGCGTCAGAAGCTGATTTCTTCGTCGGAGCATTGGGTTCCACTTGGTGTTTCCTC 1870
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 TTAATGGCATCAGACGCTGATTTCTTCGTCGGAGCATTGGGTTCCACTTGGTGTTTCCTC 1788
Query 1871 ATCGATGGTATGAGGAATACGGGTGGGAAAGTCATGTCTGGTTATCTCAGTGTCAATAAA 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 ATCGATGGTATGAGGAATACGGGTGGGAAAGTCATGTCTGGTTATCTCAGTGTCAATAAA 1848
Query 1931 GATCGGTTCTGGTAACTTTGCGAGTTC 1957
||||||||||||||||||||| |||||
Sbjct 1849 GATCGGTTCTGGTAACTTTGCCAGTTC 1875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74885421670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5