BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28927.1 Length=2289 Score E Sequences producing significant alignments: (Bits) Value Ahg331298 jgi|Araly1|331298|fgenesh1_pm.C_scaffold_8000641 267 4e-70 > Ahg331298 jgi|Araly1|331298|fgenesh1_pm.C_scaffold_8000641 Length=228 Score = 267 bits (144), Expect = 4e-70 Identities = 203/231 (88%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 1403 ATGTATCTCGATGATATAGAGACACGATTTACTCGGATTGGCCGGGTTGATGATCGACCT 1462 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGTATCTCAATGATATAGAGACACGATTTACTCGGATTGGCCGCGTTGATGATCGACCT 60 Query 1463 CTAGCTGAGACTAGCATAA-ACCCAAATTCAGAACTTTTACTTT-TATTTCCAAACCTTG 1520 | ||| ||||||||||||| ||| ||||||| ||||| | ||| |||||||||| |||| Sbjct 61 CAAGCGGAGACTAGCATAAGACC-AAATTCAAAACTTCCA-TTTATATTTCCAAAACTTG 118 Query 1521 GAATAGTTGTTGGAGCGGG-TAAAGTTTATACTCTTAATCATGTAGAGCGGCAACAAGCA 1579 || | |||||||||| | | | ||| |||||||||||||||||||| |||| |||||| Sbjct 119 AAAGATTTGTTGGAGCATGCTCATGTT-ATACTCTTAATCATGTAGAGAGGCAGCAAGCA 177 Query 1580 CATCGACATGTATTGGTCAACTGCCAACTACTAGATCACCTACGGGAGTAA 1630 |||| ||||||||||||||| || ||||||||||||||| |||| |||||| Sbjct 178 CATCAACATGTATTGGTCAATTGTCAACTACTAGATCACTTACGAGAGTAA 228 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86198224435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5