BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G28927.1

Length=2289
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331298 jgi|Araly1|331298|fgenesh1_pm.C_scaffold_8000641           267    4e-70


> Ahg331298 jgi|Araly1|331298|fgenesh1_pm.C_scaffold_8000641
Length=228

 Score =  267 bits (144),  Expect = 4e-70
 Identities = 203/231 (88%), Gaps = 6/231 (3%)
 Strand=Plus/Plus

Query  1403  ATGTATCTCGATGATATAGAGACACGATTTACTCGGATTGGCCGGGTTGATGATCGACCT  1462
             ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1     ATGTATCTCAATGATATAGAGACACGATTTACTCGGATTGGCCGCGTTGATGATCGACCT  60

Query  1463  CTAGCTGAGACTAGCATAA-ACCCAAATTCAGAACTTTTACTTT-TATTTCCAAACCTTG  1520
             | ||| ||||||||||||| ||| ||||||| |||||  | ||| |||||||||| ||||
Sbjct  61    CAAGCGGAGACTAGCATAAGACC-AAATTCAAAACTTCCA-TTTATATTTCCAAAACTTG  118

Query  1521  GAATAGTTGTTGGAGCGGG-TAAAGTTTATACTCTTAATCATGTAGAGCGGCAACAAGCA  1579
              || | ||||||||||  | | | ||| |||||||||||||||||||| |||| ||||||
Sbjct  119   AAAGATTTGTTGGAGCATGCTCATGTT-ATACTCTTAATCATGTAGAGAGGCAGCAAGCA  177

Query  1580  CATCGACATGTATTGGTCAACTGCCAACTACTAGATCACCTACGGGAGTAA  1630
             |||| ||||||||||||||| || ||||||||||||||| |||| ||||||
Sbjct  178   CATCAACATGTATTGGTCAATTGTCAACTACTAGATCACTTACGAGAGTAA  228



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 86198224435


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5